FvH4_3g26472

Plus-3 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000316
Physical Location & Seq
Forward (+)
19574874 .. 19577183
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26472.t1

Sequence Viewer

Length: 951 bp
ATGTCAGATAGCGACACTAGTGGCACTGGTGTTGCAGAAATTCTGAAGCAAATGAGAACAAGGAAAGCATCTAAGCGGCTGGAGTTTATAGGATGGGGTTCTGAACCTCTCATCAAGTTCTTAAAATCCATTGGGAAGGATACAACCGAAAAGTTGTCTCAGTTTGATTTGGACAAAATTATCTACAACTACATGAGAGATAATGAGCTTTATGACACCAAAAACAAGAGAAAGGCTCTATGTGATCAAAGTCTGCAATCCATTTTCAGAAAAAAATCTGTACTCTTAGAAAAGATATATGGTCTTCTATGGGAACATCTTGCTGAGAACGTAACAGAGGATAGCGAAAGCGATGATGAAGATGAAATCAAATTGTTAGATAAGAACAAAGGTACTGCACATGACCACAAGAAGAGAAGAGTGAGCTCTGATACAACCATAGCATCTGATGAACAGAAAGCGAGTCCTAGATTCCAAAAGAGCTGTTTCGCATCTATCGTTACTGAGAATTTGAAGCTTGTTTACATAAAGAGGACCTTACTGGAGAAGTTACTGAAGGAGCCTGACCATTCGGAAAGTAAGATACTGGGGAGTTTTGTAAGAGTGAAAAATGATTCCCTAGACTACCTTCAGAGAAGTACTCACCAACTTTCACAAGTTAAAGGTATTGTGTGTACTTGCAGTCAATATCAGGCGATGCGTTTTGTTACTGATGTCAAACCTTGTCGTTTGGATGCTTTGACATGCAAAGTTAGTGATGTATCTATACTTTATAAGCCTAAAACCATCTTTGATTGGATATACCCCAATGAGATTATCATAAGACTGATCTTCAGCAAAGGAGATATAATCTTGATACCTCCATTGGCTTTTAAGTCCACTAAGAGTCTTTTGGTTTGCTTTGTTCTATTTCCTTGCAGGCATAAAGGAAATCTTAGCAACCAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

317

Amino Acids

36.37

Weight (kDa)

9.07

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 34 - 107 2.4e-10 SWIB/MDM2 domain
Plus-3 PF03126 170 - 238 3.3e-08 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AciI CCGC 1 cut(s) 76
AcsI RAATTY 2 cut(s) 39, 508
AcuI CTGAAG 4 cut(s) 65, 575, 614, 817
AfaI GTAC 4 cut(s) 282, 394, 640, 676
AgsI TTSAA 1 cut(s) 514
AhlI ACTAGT 1 cut(s) 17
AluBI AGCT 4 cut(s) 208, 426, 483, 517
AluI AGCT 4 cut(s) 208, 426, 483, 517
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 39, 508
AspS9I GGNCC 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 635
AvaII GGWCC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 428
BarI GAAGNNNNNNTAC 2 cut(s) 506, 538
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 428
BccI CCATC 2 cut(s) 87, 794
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 162
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 3 cut(s) 18, 468, 620
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 640
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 1 cut(s) 561
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 5 cut(s) 77, 452, 500, 687, 724
BmuI ACTGGG 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 296
BplI GAGNNNNNCTC 4 cut(s) 220, 252, 625, 657
BpmI CTGGAG 2 cut(s) 101, 563
Bse1I ACTGG 3 cut(s) 31, 546, 591
BseGI GGATG 2 cut(s) 98, 739
BseMII CTCAG 3 cut(s) 173, 315, 495
BseNI ACTGG 3 cut(s) 31, 546, 591
BsgI GTGCAG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 2 cut(s) 244, 828
BspACI CCGC 1 cut(s) 76
BspCNI CTCAG 3 cut(s) 172, 316, 496
BspLI GGNNCC 1 cut(s) 561
BsrI ACTGG 3 cut(s) 31, 546, 591
BssMI GATC 2 cut(s) 244, 828
Bst6I CTCTTC 2 cut(s) 407, 412
BstC8I GCNNGC 1 cut(s) 920
BstDEI CTNAG 7 cut(s) 72, 159, 286, 324, 504, 882, 935
BstF5I GGATG 2 cut(s) 98, 739
BstKTI GATC 2 cut(s) 247, 831
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 2 cut(s) 244, 828
BstNSI RCATGY 1 cut(s) 747
BstV2I GAAGAC 1 cut(s) 296
BsuI GTATCC 1 cut(s) 133
BtgZI GCGATG 2 cut(s) 366, 710
BtsCI GGATG 2 cut(s) 98, 739
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 920
Cfr13I GGNCC 1 cut(s) 534
Csp6I GTAC 4 cut(s) 281, 393, 639, 675
CviAII CATG 3 cut(s) 193, 401, 744
CviJI RGCY 9 cut(s) 79, 208, 236, 426, 483, 517, 562, 778, 869
CviKI_1 RGCY 9 cut(s) 79, 208, 236, 426, 483, 517, 562, 778, 869
CviQI GTAC 4 cut(s) 281, 393, 639, 675
DdeI CTNAG 7 cut(s) 72, 159, 286, 324, 504, 882, 935
DpnI GATC 2 cut(s) 246, 830
DpnII GATC 2 cut(s) 244, 828
Eam1104I CTCTTC 2 cut(s) 407, 412
EarI CTCTTC 2 cut(s) 407, 412
Ecl136II GAGCTC 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 4 cut(s) 65, 575, 614, 817
EcoICRI GAGCTC 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 428
FaeI CATG 3 cut(s) 196, 404, 747
FalI AAGNNNNNCTT 4 cut(s) 521, 553, 918, 950
FatI CATG 3 cut(s) 192, 400, 743
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 2 cut(s) 105, 746
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 3 cut(s) 18, 468, 620
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 2 cut(s) 101, 563
Hin1II CATG 3 cut(s) 196, 404, 747
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 4 cut(s) 463, 471, 614, 886
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 3 cut(s) 523, 675, 879
Hpy188I TCNGA 8 cut(s) 7, 45, 103, 269, 430, 448, 574, 633
Hpy188III TCNNGA 1 cut(s) 853
Hpy8I GTNNAC 3 cut(s) 523, 675, 879
HpyAV CCTTC 3 cut(s) 130, 550, 638
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 6 cut(s) 35, 256, 398, 681, 747, 918
HpyF3I CTNAG 7 cut(s) 72, 159, 286, 324, 504, 882, 935
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 3 cut(s) 196, 404, 747
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 244, 828
LmnI GCTCC 1 cut(s) 559
LpnPI CCDG 7 cut(s) 12, 65, 527, 572, 576, 677, 904
LweI GCATC 5 cut(s) 77, 452, 500, 687, 724
MaeI CTAG 3 cut(s) 18, 468, 620
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 331, 499, 549, 706
MalI GATC 2 cut(s) 246, 830
MboI GATC 2 cut(s) 244, 828
MboII GAAGA 5 cut(s) 296, 371, 424, 429, 823
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 4 cut(s) 39, 177, 371, 508
MlyI GAGTC 2 cut(s) 472, 895
MnlI CCTC 4 cut(s) 117, 331, 525, 870
MseI TTAA 3 cut(s) 122, 660, 873
NdeII GATC 2 cut(s) 244, 828
NlaIII CATG 3 cut(s) 196, 404, 747
NlaIV GGNNCC 1 cut(s) 561
NspI RCATGY 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PfeI GAWTC 2 cut(s) 471, 614
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 2 cut(s) 471, 894
PpsI GAGTC 2 cut(s) 471, 894
PpuMI RGGWCCY 1 cut(s) 534
PsiI TTATAA 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 534
PspPPI RGGWCCY 1 cut(s) 534
RsaI GTAC 4 cut(s) 282, 394, 640, 676
RsaNI GTAC 4 cut(s) 281, 393, 639, 675
SacI GAGCTC 1 cut(s) 428
SaqAI TTAA 3 cut(s) 122, 660, 873
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 2 cut(s) 244, 828
Sau96I GGNCC 1 cut(s) 534
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 2 cut(s) 472, 895
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 5 cut(s) 77, 452, 500, 687, 724
SinI GGWCC 1 cut(s) 534
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 4 cut(s) 39, 177, 371, 508
SsiI CCGC 1 cut(s) 76
SspMI CTAG 3 cut(s) 18, 468, 620
SstI GAGCTC 1 cut(s) 428
TaiI ACGT 1 cut(s) 333
TasI AATT 4 cut(s) 39, 177, 371, 508
TatI WGTACW 3 cut(s) 280, 638, 674
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 2 cut(s) 471, 614
Tru1I TTAA 3 cut(s) 122, 660, 873
Tru9I TTAA 3 cut(s) 122, 660, 873
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 372, 378, 465
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 2 cut(s) 39, 508
XceI RCATGY 1 cut(s) 747
XspI CTAG 3 cut(s) 18, 468, 620
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.