RchiOBHm_Chr7g0230571

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000316
Physical Location & Seq
Reverse (-)
54129818 .. 54132732
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20661

Sequence Viewer

Length: 570 bp
ATGAAGGGTCTAGATAAAAGAAGAGAAGGGATCATGAAGAACAAGAAGAAGAAGAGGGTGGAGGAGGAAGACAAGGATTCAGAGGATTGGTGCTTCTGCTGCTATGATGGTGGAGATCTTATGATTTGCGACCACAAGAGTTGCTTAAAAGTGTATCATCCAGGATGCGTAGGAAAAAAGAAAAACTCCATGTACTCTGGAAAGCGCTGGACTTGTAGTAGGCATTCTTGTGTAGTGTGCTCTGGTACCTCAAGGTTTTATTGGCTTTGTTGTCCACATGCATTATGTAGAGATTGCATAGGTGCTTCTGAACTTGCACTACTAAGGGGGAAGAATGGCTTGTGCAAGAGCTGTGTAAAGCGTATTCTGCTGGCAAAAGAAAACTCAGAATATGGTTTAGAGGGAGATAAAATAGACTTAGAGGATCAAGATGAATGGCTATTCAAAGAATATTGGGAGATTGTAAAGGAAAAGGAAGGATTGACTTCAGGCGATGTTTATTCAGCAAATTCCGATTTAAAGAAGAGAGAAAATCAAAGCTGCAGATTCTTACCTGTAAATATATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

189

Amino Acids

21.81

Weight (kDa)

8.41

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 30 - 75 8.7e-06 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AclWI GGATC 2 cut(s) 38, 432
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 2 cut(s) 194, 247
AfeI AGCGCT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 2 cut(s) 351, 540
AluI AGCT 2 cut(s) 351, 540
Alw21I GWGCWC 1 cut(s) 242
AlwI GGATC 2 cut(s) 38, 432
Aor51HI AGCGCT 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 99, 540
ApoI RAATTY 1 cut(s) 508
Asp718I GGTACC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 86, 527
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 541
BfoI RGCGCY 1 cut(s) 208
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 100, 541
BlsI GCNGC 2 cut(s) 101, 542
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 157, 170
BseMII CTCAG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 86, 527
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 3 cut(s) 30, 115, 424
BspCNI CTCAG 1 cut(s) 398
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 247
BspMAI CTGCAG 1 cut(s) 545
BspPI GGATC 2 cut(s) 38, 432
BspT107I GGYRCC 1 cut(s) 245
BssMI GATC 3 cut(s) 30, 115, 424
Bst2UI CCWGG 1 cut(s) 162
Bst6I CTCTTC 3 cut(s) 16, 47, 518
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 3 cut(s) 323, 385, 418
BstF5I GGATG 2 cut(s) 157, 170
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 3 cut(s) 33, 118, 427
BstMBI GATC 3 cut(s) 30, 115, 424
BstMWI GCNNNNNNNGC 2 cut(s) 99, 367
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 86, 527
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 2 cut(s) 157, 170
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 193, 246
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 3 cut(s) 34, 190, 278
CviJI RGCY 5 cut(s) 265, 339, 351, 439, 540
CviKI_1 RGCY 5 cut(s) 265, 339, 351, 439, 540
CviQI GTAC 2 cut(s) 193, 246
DdeI CTNAG 3 cut(s) 323, 385, 418
DpnI GATC 3 cut(s) 32, 117, 426
DpnII GATC 3 cut(s) 30, 115, 424
DraI TTTAAA 1 cut(s) 519
Eam1104I CTCTTC 3 cut(s) 16, 47, 518
EarI CTCTTC 3 cut(s) 16, 47, 518
Eco47III AGCGCT 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 283
FaeI CATG 3 cut(s) 37, 193, 281
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 323, 355
FatI CATG 3 cut(s) 33, 189, 277
Fnu4HI GCNGC 2 cut(s) 100, 541
FokI GGATG 2 cut(s) 144, 177
Fsp4HI GCNGC 2 cut(s) 100, 541
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 206
GluI GCNGC 2 cut(s) 100, 541
HaeII RGCGCY 1 cut(s) 208
HhaI GCGC 1 cut(s) 207
Hin1II CATG 3 cut(s) 37, 193, 281
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 2 cut(s) 77, 546
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 4 cut(s) 82, 310, 388, 514
Hpy188III TCNNGA 4 cut(s) 11, 34, 198, 428
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 20, 470
HpyCH4V TGCA 5 cut(s) 281, 297, 317, 345, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 367
HpyF3I CTNAG 3 cut(s) 323, 385, 418
Hsp92II CATG 3 cut(s) 37, 193, 281
HspAI GCGC 1 cut(s) 205
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 30, 115, 424
LpnPI CCDG 7 cut(s) 147, 174, 183, 193, 228, 356, 474
Lsp1109I GCAGC 2 cut(s) 86, 527
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 11
MalI GATC 3 cut(s) 32, 117, 426
MboI GATC 3 cut(s) 30, 115, 424
MboII GAAGA 8 cut(s) 33, 49, 58, 61, 64, 80, 343, 535
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 1 cut(s) 508
MnlI CCTC 7 cut(s) 48, 55, 58, 76, 259, 394, 415
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 2 cut(s) 146, 518
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 99, 367
NdeII GATC 3 cut(s) 30, 115, 424
NlaIII CATG 3 cut(s) 37, 193, 281
NlaIV GGNNCC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 281
PagI TCATGA 1 cut(s) 33
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 77, 546
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 2 cut(s) 101, 542
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 303, 335
PstI CTGCAG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 194, 247
RsaNI GTAC 2 cut(s) 193, 246
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 146, 518
SatI GCNGC 2 cut(s) 100, 541
Sau3AI GATC 3 cut(s) 30, 115, 424
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 242
SetI ASST 6 cut(s) 251, 257, 304, 353, 542, 556
SfaNI GCATC 1 cut(s) 155
SfcI CTRYAG 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 508
SspI AATATT 1 cut(s) 452
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 160
TasI AATT 1 cut(s) 508
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 2 cut(s) 77, 546
Tru1I TTAA 2 cut(s) 146, 518
Tru9I TTAA 2 cut(s) 146, 518
TseI GCWGC 2 cut(s) 99, 540
TspDTI ATGAA 3 cut(s) 17, 50, 447
XapI RAATTY 1 cut(s) 508
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.