Rorug07G0230400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000316
Physical Location & Seq
Reverse (-)
21023492 .. 21027730
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0230400.1

Sequence Viewer

Length: 1206 bp
ATGGCTGCCTCGCTCGTCATGCCGTCGCCTGCTTCGTCGTCGTCCACGGCGGCGATGGCTTCGTCTCTGTTCGCTCGCGGCCATAGAAATTTGCTCGGCGGGAGTGAATATGGCTCCCGAATCTACGCTCCTAACTGTGTTAAATGTGAAATGGCTGAACCAATAAACGGAAATGGGAAGCCGATTATTCCTGTTGTGAACGAGCGGACACTGCCCAAGTTCTTGGAATCGGCACGGTTGGCGAAATCGGTTAACAGAAGTAGTTCCAGGCTCAAATTGTTTTCTGGCACAGCAAATCCTGCTCTTTCACAGGAAATTGCTTGGTACATGGGTTTGGAGCTTGGAAAGATCAACATAAAGAGGTTTGCTGATGGTGAAGTATATGTTCAGTTGGGAGAGAGTGTTAGAGGATGTGATGTATTCTTATTGCAGCCAACCTGCCCTCCTGTCAATGAGAACCTCATGGAGCTACAAATTGTAATTGATGCATGTCGGAGGGCATCGGCCAGAAATATTACTGCAGTTATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATAGCAGCCAAACTGGTTGCAAACCTCGTCACTATGGCAGGTGCAGACCGTGTTCTTGCTTGTGACATTCATTCCGGGCAGTCAATAGGTTACTTTGATATACCAGTGGATCATGTATATTGTGAGCATGTTATCCTTGATTACCTAGCCAGCAAGGCAATTTGTTCTGATGATTTGGTGGTGGTATCCCCTGATGTTGGGGGAGTTGCAAGAGCACGTGCTTTTGCAAAGAAACTATCTGATGCACCTTTAGCCATCATAGACAAAAGGCGTCATGGACACAATATTGCTGAGGTGATGAACTTGATTGGCGATGTAAAAGGAAAAGTTGCAGTGATGGTGGATGATATGATTGACACTGCTGGGACAATCTCAAAAGGCGCAGCCCTGTTACATGAAGAGGGGGCAAGGGAAGTCTATGCATGCTGTACCCATGCTGTGTTTAGCCCTCCTGCAATTGAAAGGTTATCGAGTGGCCTGTTTCAAGAGGTGATTGTAACAAACACAATCCCTGTTGCAGAGAAGAATTACTTCCCTCAGTTGACTATACTTTCAGTAGCTAACCTGTTGGGTGAGACCATTTGGCGTGTTCACGATGATTCTTCTGTGAGTAGCATATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

401

Amino Acids

43.22

Weight (kDa)

6.76

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran_N PF13793 91 - 207 3.2e-50 N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran PF00156 251 - 339 1.4e-16 Phosphoribosyl transferase domain
Pribosyl_synth PF14572 293 - 400 2.4e-24 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 608
Acc36I ACCTGC 2 cut(s) 446, 608
AccB7I CCANNNNNTGG 1 cut(s) 536
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 78
AciI CCGC 4 cut(s) 50, 78, 99, 205
AclWI GGATC 1 cut(s) 696
AcoI YGGCCR 2 cut(s) 79, 504
AcsI RAATTY 1 cut(s) 88
AcvI CACGTG 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 850
AfaI GTAC 2 cut(s) 326, 1009
AfiI CCNNNNNNNGG 3 cut(s) 167, 536, 776
AgsI TTSAA 2 cut(s) 1040, 1064
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 4 cut(s) 340, 469, 551, 1139
AluI AGCT 4 cut(s) 340, 469, 551, 1139
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 2 cut(s) 69, 1148
AlwI GGATC 1 cut(s) 696
AoxI GGCC 3 cut(s) 79, 504, 1054
ApeKI GCWGC 4 cut(s) 5, 430, 584, 962
ApoI RAATTY 1 cut(s) 88
Asp700I GAANNNNTTC 2 cut(s) 262, 1109
AspLEI GCGC 1 cut(s) 962
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 4 cut(s) 386, 886, 1081, 1163
BaeI ACNNNNGTAYC 2 cut(s) 316, 349
BbrPI CACGTG 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 796
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 3 cut(s) 442, 596, 974
BccI CCATC 4 cut(s) 49, 365, 842, 910
BceAI ACGGC 2 cut(s) 7, 63
BciT130I CCWGG 1 cut(s) 268
BciVI GTATCC 1 cut(s) 775
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 69, 1148
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 1 cut(s) 519
BfuAI ACCTGC 2 cut(s) 446, 608
BfuI GTATCC 1 cut(s) 775
BglI GCCNNNNNGGC 1 cut(s) 734
BisI GCNGC 6 cut(s) 6, 51, 79, 431, 585, 963
BlsI GCNGC 6 cut(s) 7, 52, 80, 432, 586, 964
Bme1390I CCNGG 2 cut(s) 268, 655
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 268, 655
BmsI GCATC 3 cut(s) 475, 509, 811
Bpu10I CCTNAGC 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 797
BsaHI GRCGYC 1 cut(s) 850
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 4 cut(s) 387, 417, 427, 457
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 536, 776
Bse1I ACTGG 2 cut(s) 597, 683
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 416, 928
BseLI CCNNNNNNNGG 3 cut(s) 167, 536, 776
BseMII CTCAG 2 cut(s) 861, 1130
BseNI ACTGG 2 cut(s) 597, 683
BseXI GCAGC 3 cut(s) 442, 596, 974
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 81, 506, 1056
BsiHKAI GWGCWC 1 cut(s) 796
BsiSI CCGG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 958
BslI CCNNNNNNNGG 3 cut(s) 167, 536, 776
BsmAI GTCTC 2 cut(s) 69, 1148
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 958
BsnI GGCC 3 cut(s) 81, 506, 1056
Bso31I GGTCTC 1 cut(s) 1148
Bsp1286I GDGCHC 1 cut(s) 796
Bsp143I GATC 2 cut(s) 348, 688
BspACI CCGC 4 cut(s) 50, 78, 99, 205
BspANI GGCC 3 cut(s) 81, 506, 1056
BspCNI CTCAG 2 cut(s) 862, 1129
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 2 cut(s) 446, 608
BspPI GGATC 1 cut(s) 696
BspTNI GGTCTC 1 cut(s) 1148
BsrBI CCGCTC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 597, 683
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 2 cut(s) 348, 688
BssNI GRCGYC 1 cut(s) 850
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 3 cut(s) 137, 237, 629
Bst6I CTCTTC 1 cut(s) 972
BstACI GRCGYC 1 cut(s) 850
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 4 cut(s) 30, 76, 730, 1003
BstDEI CTNAG 2 cut(s) 870, 1116
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 416, 928
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 2 cut(s) 351, 691
BstMAI GTCTC 2 cut(s) 69, 1148
BstMBI GATC 2 cut(s) 348, 688
BstMWI GCNNNNNNNGC 7 cut(s) 19, 56, 211, 239, 299, 734, 830
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 3 cut(s) 492, 710, 1005
BstSCI CCNGG 2 cut(s) 266, 653
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 442, 596, 974
BstXI CCANNNNNNTGG 1 cut(s) 223
BsuI GTATCC 1 cut(s) 775
BsuRI GGCC 3 cut(s) 81, 506, 1056
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 2 cut(s) 68, 906
BtsCI GGATG 2 cut(s) 416, 928
BtsI GCAGTG 3 cut(s) 209, 918, 936
BtsIMutI CAGTG 4 cut(s) 209, 690, 918, 936
BveI ACCTGC 2 cut(s) 446, 608
Cac8I GCNNGC 4 cut(s) 30, 76, 730, 1003
CfoI GCGC 1 cut(s) 962
CseI GACGC 1 cut(s) 839
Csp6I GTAC 2 cut(s) 325, 1008
CviQI GTAC 2 cut(s) 325, 1008
DdeI CTNAG 2 cut(s) 870, 1116
DpnI GATC 2 cut(s) 350, 690
DpnII GATC 2 cut(s) 348, 688
EaeI YGGCCR 2 cut(s) 79, 504
Eam1104I CTCTTC 1 cut(s) 972
EarI CTCTTC 1 cut(s) 972
Eco31I GGTCTC 1 cut(s) 1148
Eco72I CACGTG 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 266
EcoT22I ATGCAT 2 cut(s) 490, 1003
Esp3I CGTCTC 1 cut(s) 69
FalI AAGNNNNNCTT 2 cut(s) 1094, 1126
FaqI GGGAC 1 cut(s) 958
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 6 cut(s) 6, 51, 79, 431, 585, 963
FokI GGATG 2 cut(s) 423, 935
Fsp4HI GCNGC 6 cut(s) 6, 51, 79, 431, 585, 963
FspBI CTAG 1 cut(s) 725
GlaI GCGC 1 cut(s) 961
GluI GCNGC 6 cut(s) 6, 51, 79, 431, 585, 963
GsaI CCCAGC 1 cut(s) 945
HaeIII GGCC 3 cut(s) 81, 506, 1056
HapII CCGG 1 cut(s) 654
HgaI GACGC 1 cut(s) 839
HhaI GCGC 1 cut(s) 962
Hin1I GRCGYC 1 cut(s) 850
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HincII GTYRAC 2 cut(s) 253, 1122
HindII GTYRAC 2 cut(s) 253, 1122
HinfI GANTC 5 cut(s) 120, 227, 562, 575, 1178
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 1 cut(s) 654
HphI GGTGA 4 cut(s) 386, 886, 1081, 1163
Hpy166II GTNNAC 5 cut(s) 45, 199, 253, 1122, 1171
Hpy188I TCNGA 3 cut(s) 495, 748, 820
Hpy188III TCNNGA 3 cut(s) 117, 1064, 1172
Hpy8I GTNNAC 5 cut(s) 45, 199, 253, 1122, 1171
Hpy99I CGWCG 3 cut(s) 28, 40, 43
HpyCH4III ACNGT 3 cut(s) 137, 237, 629
HpyCH4IV ACGT 1 cut(s) 796
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 56, 211, 239, 299, 734, 830
HpyF3I CTNAG 2 cut(s) 870, 1116
HpySE526I ACGT 1 cut(s) 796
Hsp92I GRCGYC 1 cut(s) 850
HspAI GCGC 1 cut(s) 960
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 348, 688
LmnI GCTCC 4 cut(s) 119, 133, 337, 466
Lsp1109I GCAGC 3 cut(s) 442, 596, 974
LweI GCATC 3 cut(s) 475, 509, 811
MaeI CTAG 1 cut(s) 725
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 5 cut(s) 607, 641, 668, 969, 1075
MalI GATC 2 cut(s) 350, 690
MbiI CCGCTC 1 cut(s) 205
MboI GATC 2 cut(s) 348, 688
MboII GAAGA 3 cut(s) 989, 1114, 1173
MfeI CAATTG 1 cut(s) 1035
MhlI GDGCHC 1 cut(s) 796
MluCI AATT 8 cut(s) 88, 275, 315, 474, 480, 738, 1035, 1105
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 1 cut(s) 473
Mph1103I ATGCAT 2 cut(s) 490, 1003
MroXI GAANNNNTTC 2 cut(s) 262, 1109
MseI TTAA 2 cut(s) 141, 252
MspI CCGG 1 cut(s) 654
MspR9I CCNGG 2 cut(s) 268, 655
MunI CAATTG 1 cut(s) 1035
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 7 cut(s) 19, 56, 211, 239, 299, 734, 830
NciI CCSGG 1 cut(s) 655
NdeII GATC 2 cut(s) 348, 688
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 607, 641
NsiI ATGCAT 2 cut(s) 490, 1003
NspI RCATGY 3 cut(s) 492, 710, 1005
PaeI GCATGC 1 cut(s) 1005
PaqCI CACCTGC 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 2 cut(s) 262, 1109
PfeI GAWTC 4 cut(s) 120, 227, 575, 1178
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 6 cut(s) 7, 52, 80, 432, 586, 964
PleI GAGTC 1 cut(s) 556
PmaCI CACGTG 1 cut(s) 797
PmlI CACGTG 1 cut(s) 797
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 266
PspCI CACGTG 1 cut(s) 797
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 115
PstI CTGCAG 1 cut(s) 523
RsaI GTAC 2 cut(s) 326, 1009
RsaNI GTAC 2 cut(s) 325, 1008
SaqAI TTAA 2 cut(s) 141, 252
SatI GCNGC 6 cut(s) 6, 51, 79, 431, 585, 963
Sau3AI GATC 2 cut(s) 348, 688
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 2 cut(s) 268, 655
SduI GDGCHC 1 cut(s) 796
SfaNI GCATC 3 cut(s) 475, 509, 811
SfcI CTRYAG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
SphI GCATGC 1 cut(s) 1005
Sse9I AATT 8 cut(s) 88, 275, 315, 474, 480, 738, 1035, 1105
SsiI CCGC 4 cut(s) 50, 78, 99, 205
SspI AATATT 2 cut(s) 514, 865
SspMI CTAG 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 266, 653
TaaI ACNGT 3 cut(s) 137, 237, 629
TaiI ACGT 1 cut(s) 799
TaqI TCGA 1 cut(s) 1049
TasI AATT 8 cut(s) 88, 275, 315, 474, 480, 738, 1035, 1105
TauI GCSGC 2 cut(s) 53, 81
TfiI GAWTC 4 cut(s) 120, 227, 575, 1178
Tru1I TTAA 2 cut(s) 141, 252
Tru9I TTAA 2 cut(s) 141, 252
TscAI CASTG 4 cut(s) 216, 690, 918, 943
TseFI GTSAC 2 cut(s) 607, 641
TseI GCWGC 4 cut(s) 5, 430, 584, 962
Tsp45I GTSAC 2 cut(s) 607, 641
TspDTI ATGAA 3 cut(s) 638, 893, 990
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 4 cut(s) 216, 690, 918, 943
Van91I CCANNNNNTGG 1 cut(s) 536
XapI RAATTY 1 cut(s) 88
XceI RCATGY 3 cut(s) 492, 710, 1005
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmnI GAANNNNTTC 2 cut(s) 262, 1109
XspI CTAG 1 cut(s) 725
Zsp2I ATGCAT 2 cut(s) 490, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.