Rh7DG408800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000316
Physical Location & Seq
Reverse (-)
57359101 .. 57361832
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG408800.1

Sequence Viewer

Length: 1065 bp
ATGTCAGACAGCGACACTAGTGCCACTGGTGTTACAGAAATTCAGAAGCCAATGAGATTAAGAAAGGGATCTAAGCGACTAGAGTTTATAGGATGGGGTTCTAAACCTCTCATTGAGTTTCTAAGATCCATTGGGAAGGATACAACTGAGAAGATATCCCAGCTTGATTTGGACAAGATTATCTGTAACTACATCAGAGATAAAGAGCTTTATGTGACCAAGGACAAGAGAAAGGCTCTATGTGATCAAAGTCTGCAATCCATTTTCAGAACGAAATTTGTATTCCTGGTAAGGATATATGGTCTTCTAGGGGAACATCTTGCCGAGAACATAACAGAGGATAGTGGAAGCGAGGATGAGGAAGAAATCAAATTGGAAGATAAGAACAATGGTACTACGCATGAAAGCAAGAAGAGAAGAGTGAGCTCTGATACAACCATAGCATCTGATGAAAAGAAAGCAAGTCCTAGATTCCAAAAGGGCTGTTTCGCATCTATTATCCCTGAGAATATGAAGCTTGTTTACGTAAAGAGGAGCTTACTGGAGAAGTTACTGAAGGAGCCTGATCATTCGGAAAGCAAGGTACTAGGGAGTTTTGTGAGAGTGAAAAATAACCCCCCAGACTACCTTCAGAGAAATACTCACCAACTTTCACAAGTTAAAGGTATTCCATGGTCGCCGTGCACAAATCACCCATTGGTCCAAGCCGTTCCTCAAGTACCTAATACCGGAGCCCTAGCCCAAATCAACAACTCCAAATCTCACATAATCAACTGGATCTCACAAATTCTTTCCACTTCGCCGTGGTCTCTCTCCGCAGACTCCGGTCGCCCGCAGATCACTGTTATCGCCGACGGATTCCATTGCTTCTCCCACAGATCGATAGCGACGACTTCGTCTCCGGCTTCGAAGGCAAGTCCAACCTCTTTTGGCAGCTTGAACTGGATCTCTGACTCTTTCATCTTCCTCTCAATTCCATCGACCACATCTCCGTCTCTGGCTCCTCGACGACTCCCTCCAACTCCCTCCCTCCATGGTTCCGTCCTTCAAGGCGAGCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

354

Amino Acids

39.43

Weight (kDa)

9.15

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 34 - 107 1.3e-08 SWIB/MDM2 domain
Plus-3 PF03126 170 - 223 1e-07 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 895
AciI CCGC 2 cut(s) 816, 833
AclWI GGATC 4 cut(s) 76, 120, 785, 953
AcsI RAATTY 3 cut(s) 39, 275, 786
AcuI CTGAAG 2 cut(s) 575, 614
AfaI GTAC 3 cut(s) 394, 585, 720
AfiI CCNNNNNNNGG 1 cut(s) 728
AgsI TTSAA 2 cut(s) 940, 1049
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 6 cut(s) 163, 208, 426, 517, 537, 936
AluI AGCT 6 cut(s) 163, 208, 426, 517, 537, 936
Alw21I GWGCWC 3 cut(s) 428, 686, 1059
Alw26I GTCTC 3 cut(s) 813, 903, 999
Alw44I GTGCAC 1 cut(s) 682
AlwI GGATC 4 cut(s) 76, 120, 785, 953
ApaLI GTGCAC 1 cut(s) 682
ApeKI GCWGC 1 cut(s) 933
ApoI RAATTY 3 cut(s) 39, 275, 786
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 2 cut(s) 635, 683
AsuII TTCGAA 1 cut(s) 908
AvaII GGWCC 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 686
BanII GRGCYC 2 cut(s) 428, 736
BarI GAAGNNNNNNTAC 2 cut(s) 506, 538
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 3 cut(s) 428, 686, 1059
BbvI GCAGC 1 cut(s) 945
BccI CCATC 2 cut(s) 87, 985
BceAI ACGGC 3 cut(s) 664, 692, 787
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 2 cut(s) 244, 565
BcoDI GTCTC 3 cut(s) 813, 903, 999
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 6 cut(s) 18, 80, 308, 468, 587, 737
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 1 cut(s) 934
BlsI GCNGC 1 cut(s) 935
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 4 cut(s) 561, 733, 1002, 1039
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 452, 500
BoxI GACNNNNGTC 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 296
BplI GAGNNNNNCTC 4 cut(s) 220, 252, 625, 657
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 699
Bsa29I ATCGAT 1 cut(s) 881
BsaAI YACGTR 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 813
BsaJI CCNNGG 4 cut(s) 219, 671, 803, 1033
BsaWI WCCGGW 2 cut(s) 728, 824
BsaXI ACNNNNNCTCC 4 cut(s) 883, 913, 973, 1003
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse1I ACTGG 4 cut(s) 31, 546, 779, 947
Bse3DI GCAATG 1 cut(s) 862
BseBI CCWGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 881
BseDI CCNNGG 4 cut(s) 219, 671, 803, 1033
BseGI GGATG 2 cut(s) 98, 361
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 2 cut(s) 138, 495
BseNI ACTGG 4 cut(s) 31, 546, 779, 947
BseRI GAGGAG 2 cut(s) 547, 993
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 1 cut(s) 945
BseYI CCCAGC 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 829
BshVI ATCGAT 1 cut(s) 881
BsiEI CGRYCG 1 cut(s) 829
BsiHKAI GWGCWC 3 cut(s) 428, 686, 1059
BsiSI CCGG 3 cut(s) 729, 825, 902
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 3 cut(s) 813, 903, 999
BsmBI CGTCTC 2 cut(s) 903, 999
Bso31I GGTCTC 1 cut(s) 813
Bsp119I TTCGAA 1 cut(s) 908
Bsp1286I GDGCHC 4 cut(s) 428, 686, 736, 1059
Bsp143I GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
Bsp19I CCATGG 2 cut(s) 671, 1033
BspACI CCGC 2 cut(s) 816, 833
BspCNI CTCAG 2 cut(s) 139, 496
BspDI ATCGAT 1 cut(s) 881
BspLI GGNNCC 4 cut(s) 561, 733, 1002, 1039
BspPI GGATC 4 cut(s) 76, 120, 785, 953
BspT104I TTCGAA 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 813
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 4 cut(s) 31, 546, 779, 947
BssECI CCNNGG 4 cut(s) 219, 671, 803, 1033
BssMI GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
BssT1I CCWWGG 3 cut(s) 219, 671, 1033
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 844
Bst6I CTCTTC 2 cut(s) 407, 412
BstBAI YACGTR 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 2 cut(s) 833, 1055
BstDEI CTNAG 4 cut(s) 72, 122, 147, 504
BstDSI CCRYGG 3 cut(s) 671, 803, 1033
BstF5I GGATG 2 cut(s) 98, 361
BstKTI GATC 8 cut(s) 71, 128, 247, 568, 780, 840, 881, 948
BstMAI GTCTC 3 cut(s) 813, 903, 999
BstMBI GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
BstMCI CGRYCG 1 cut(s) 829
BstMWI GCNNNNNNNGC 1 cut(s) 911
BstNI CCWGG 1 cut(s) 287
BstPAI GACNNNNGTC 1 cut(s) 825
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 686
BstSNI TACGTA 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 945
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 4 cut(s) 68, 125, 777, 945
BstYI RGATCY 4 cut(s) 68, 125, 777, 945
Bsu15I ATCGAT 1 cut(s) 881
BsuI GTATCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 881
BtgI CCRYGG 3 cut(s) 671, 803, 1033
BtsCI GGATG 2 cut(s) 98, 361
BtsIMutI CAGTG 2 cut(s) 24, 840
Cac8I GCNNGC 2 cut(s) 833, 1055
Cfr13I GGNCC 1 cut(s) 700
ClaI ATCGAT 1 cut(s) 881
Csp6I GTAC 3 cut(s) 393, 584, 719
CviAII CATG 3 cut(s) 401, 672, 1034
CviQI GTAC 3 cut(s) 393, 584, 719
DdeI CTNAG 4 cut(s) 72, 122, 147, 504
DpnI GATC 8 cut(s) 70, 127, 246, 567, 779, 839, 880, 947
DpnII GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
DrdI GACNNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 895
Eam1104I CTCTTC 2 cut(s) 407, 412
EarI CTCTTC 2 cut(s) 407, 412
Ecl136II GAGCTC 1 cut(s) 426
Eco105I TACGTA 1 cut(s) 526
Eco130I CCWWGG 3 cut(s) 219, 671, 1033
Eco24I GRGCYC 2 cut(s) 428, 736
Eco31I GGTCTC 1 cut(s) 813
Eco32I GATATC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 2 cut(s) 575, 614
EcoICRI GAGCTC 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 156
EcoT14I CCWWGG 3 cut(s) 219, 671, 1033
EcoT38I GRGCYC 2 cut(s) 428, 736
ErhI CCWWGG 3 cut(s) 219, 671, 1033
Esp3I CGTCTC 2 cut(s) 903, 999
FaeI CATG 3 cut(s) 404, 675, 1037
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FatI CATG 3 cut(s) 400, 671, 1033
FauI CCCGC 1 cut(s) 840
FbaI TGATCA 2 cut(s) 244, 565
Fnu4HI GCNGC 1 cut(s) 934
FokI GGATG 2 cut(s) 105, 368
FriOI GRGCYC 2 cut(s) 428, 736
Fsp4HI GCNGC 1 cut(s) 934
FspBI CTAG 6 cut(s) 18, 80, 308, 468, 587, 737
GluI GCNGC 1 cut(s) 934
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 563
HapII CCGG 3 cut(s) 729, 825, 902
Hin1II CATG 3 cut(s) 404, 675, 1037
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 471, 821, 858, 953, 1011
HpaII CCGG 3 cut(s) 729, 825, 902
HphI GGTGA 2 cut(s) 635, 683
Hpy166II GTNNAC 2 cut(s) 523, 684
Hpy188I TCNGA 9 cut(s) 7, 45, 197, 269, 430, 448, 574, 633, 952
Hpy8I GTNNAC 2 cut(s) 523, 684
Hpy99I CGWCG 3 cut(s) 857, 892, 1011
HpyAV CCTTC 5 cut(s) 130, 550, 638, 904, 1055
HpyCH4III ACNGT 1 cut(s) 844
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 2 cut(s) 256, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 911
HpyF3I CTNAG 4 cut(s) 72, 122, 147, 504
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 3 cut(s) 404, 675, 1037
Ksp22I TGATCA 2 cut(s) 244, 565
Kzo9I GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
LmnI GCTCC 4 cut(s) 534, 559, 731, 1006
Lsp1109I GCAGC 1 cut(s) 945
LweI GCATC 2 cut(s) 452, 500
MaeI CTAG 6 cut(s) 18, 80, 308, 468, 587, 737
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 4 cut(s) 31, 185, 214, 549
MalI GATC 8 cut(s) 70, 127, 246, 567, 779, 839, 880, 947
MboI GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
MboII GAAGA 7 cut(s) 163, 296, 374, 389, 424, 429, 955
MfeI CAATTG 1 cut(s) 1060
MflI RGATCY 4 cut(s) 68, 125, 777, 945
MhlI GDGCHC 4 cut(s) 428, 686, 736, 1059
MluCI AATT 6 cut(s) 39, 275, 371, 786, 972, 1060
MlyI GAGTC 3 cut(s) 815, 947, 1005
MmeI TCCRAC 2 cut(s) 944, 1043
MseI TTAA 2 cut(s) 59, 660
MspI CCGG 3 cut(s) 729, 825, 902
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 1060
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 911
NcoI CCATGG 2 cut(s) 671, 1033
NdeII GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
NlaIII CATG 3 cut(s) 404, 675, 1037
NlaIV GGNNCC 4 cut(s) 561, 733, 1002, 1039
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 908
PcsI WCGNNNNNNNCGW 1 cut(s) 887
PfeI GAWTC 2 cut(s) 471, 858
PflFI GACNNNGTC 1 cut(s) 895
PkrI GCNGC 1 cut(s) 935
PleI GAGTC 3 cut(s) 815, 947, 1005
PpsI GAGTC 3 cut(s) 815, 947, 1005
Ppu21I YACGTR 1 cut(s) 526
PshAI GACNNNNGTC 1 cut(s) 825
Psp124BI GAGCTC 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 4 cut(s) 561, 733, 1002, 1039
PspPI GGNCC 1 cut(s) 700
PsuI RGATCY 4 cut(s) 68, 125, 777, 945
PsyI GACNNNGTC 1 cut(s) 895
RsaI GTAC 3 cut(s) 394, 585, 720
RsaNI GTAC 3 cut(s) 393, 584, 719
SacI GAGCTC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 59, 660
SatI GCNGC 1 cut(s) 934
Sau3AI GATC 8 cut(s) 68, 125, 244, 565, 777, 837, 878, 945
Sau96I GGNCC 1 cut(s) 700
SchI GAGTC 3 cut(s) 815, 947, 1005
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 4 cut(s) 428, 686, 736, 1059
SfaNI GCATC 2 cut(s) 452, 500
SfuI TTCGAA 1 cut(s) 908
SinI GGWCC 1 cut(s) 700
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SnaBI TACGTA 1 cut(s) 526
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 6 cut(s) 39, 275, 371, 786, 972, 1060
SsiI CCGC 2 cut(s) 816, 833
SspMI CTAG 6 cut(s) 18, 80, 308, 468, 587, 737
SstI GAGCTC 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 3 cut(s) 219, 671, 1033
TaaI ACNGT 1 cut(s) 844
TaiI ACGT 1 cut(s) 528
TaqI TCGA 4 cut(s) 881, 908, 980, 1006
TasI AATT 6 cut(s) 39, 275, 371, 786, 972, 1060
TfiI GAWTC 2 cut(s) 471, 858
Tru1I TTAA 2 cut(s) 59, 660
Tru9I TTAA 2 cut(s) 59, 660
TscAI CASTG 2 cut(s) 31, 847
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 933
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 4 cut(s) 417, 465, 527, 949
TspGWI ACGGA 3 cut(s) 870, 981, 1030
TspRI CASTG 2 cut(s) 31, 847
Tth111I GACNNNGTC 1 cut(s) 895
VneI GTGCAC 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 3 cut(s) 39, 275, 786
XspI CTAG 6 cut(s) 18, 80, 308, 468, 587, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.