Rh6BG090900

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000316
Physical Location & Seq
Reverse (-)
14335060 .. 14343926
8867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG090900.1

Sequence Viewer

Length: 672 bp
ATGTCTAGGATGGCTGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGAGGCACAGGCACTACAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGCTGAGCTTGATCATGGGAAGTCACAGGACGTTAGGAGTCAGCATACCGCATCTGTTGGGAGTAGTTACAAGTTAGTGGAGGACATCAGTCCATCTGCCTCAGAAAATTCCACAGTTGTCACATCTAAAACTGCATCTCCAGTTTGCGGCTCATATAGTGAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACCATCAGAGATTTCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTACACTAGTTCAGAAGGCTGCTGAACAAGAAGGGAACTTTGGAGCAAGAAAGAAACCCTTGACTGAAATTGGGAACGTATTGACACCTTTGTTCTATTTCCTCTCCACTGCTTACAATCTTCTCATTCATTCATTGAAAAAACAAGCTGAAATTCTATTTGGATTGCAAGAAACTGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

23.86

Weight (kDa)

6.82

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AciI CCGC 2 cut(s) 147, 246
AclWI GGATC 1 cut(s) 291
AcsI RAATTY 3 cut(s) 205, 262, 639
AcuI CTGAAG 2 cut(s) 467, 486
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 426, 625
AhlI ACTAGT 1 cut(s) 493
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 4 cut(s) 510, 542, 630, 662
AluBI AGCT 4 cut(s) 31, 106, 312, 635
AluI AGCT 4 cut(s) 31, 106, 312, 635
Alw21I GWGCWC 1 cut(s) 83
AlwI GGATC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 348, 506
ApoI RAATTY 3 cut(s) 205, 262, 639
BanI GGYRCC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 360, 493
BccI CCATC 3 cut(s) 4, 199, 400
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 109
BcuI ACTAGT 1 cut(s) 493
BfaI CTAG 2 cut(s) 6, 494
BisI GCNGC 3 cut(s) 247, 349, 507
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 3 cut(s) 248, 350, 508
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 158, 242
BoxI GACNNNNGTC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 239, 432
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 6, 93, 213
BseNI ACTGG 2 cut(s) 239, 432
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 360, 493
BsgI GTGCAG 2 cut(s) 354, 367
BshNI GGYRCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 109, 296
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 2 cut(s) 147, 246
BspCNI CTCAG 3 cut(s) 7, 94, 212
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 2 cut(s) 239, 432
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 109, 296
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 214, 442, 664
Bst6I CTCTTC 1 cut(s) 440
BstDEI CTNAG 4 cut(s) 15, 102, 199, 342
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 112, 299
BstMBI GATC 2 cut(s) 109, 296
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 89
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 360, 493
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 3 cut(s) 439, 447, 594
Csp6I GTAC 1 cut(s) 489
CviAII CATG 3 cut(s) 84, 113, 324
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 4 cut(s) 15, 102, 199, 342
DpnI GATC 2 cut(s) 111, 298
DpnII GATC 2 cut(s) 109, 296
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 2 cut(s) 467, 486
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 87, 116, 327
FaiI YATR 7 cut(s) 85, 114, 144, 253, 255, 325, 455
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 1 cut(s) 350
FatI CATG 3 cut(s) 83, 112, 323
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 247, 349, 507
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 247, 349, 507
FspBI CTAG 2 cut(s) 6, 494
GluI GCNGC 3 cut(s) 247, 349, 507
GsuI CTGGAG 1 cut(s) 222
Hin1II CATG 3 cut(s) 87, 116, 327
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 136, 383
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 6 cut(s) 202, 397, 417, 466, 486, 501
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 3 cut(s) 461, 496, 512
HpyCH4III ACNGT 3 cut(s) 214, 442, 664
HpyCH4IV ACGT 2 cut(s) 129, 564
HpyCH4V TGCA 7 cut(s) 233, 273, 288, 335, 348, 473, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 4 cut(s) 15, 102, 199, 342
HpySE526I ACGT 2 cut(s) 129, 564
Hsp92II CATG 3 cut(s) 87, 116, 327
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 2 cut(s) 109, 296
LmnI GCTCC 1 cut(s) 530
LpnPI CCDG 6 cut(s) 38, 74, 101, 110, 252, 445
Lsp1109I GCAGC 2 cut(s) 360, 493
LweI GCATC 2 cut(s) 158, 242
MaeI CTAG 2 cut(s) 6, 494
MaeII ACGT 2 cut(s) 129, 564
MaeIII GTNAC 4 cut(s) 120, 164, 217, 380
MalI GATC 2 cut(s) 111, 298
MboI GATC 2 cut(s) 109, 296
MboII GAAGA 2 cut(s) 457, 599
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 4 cut(s) 205, 262, 555, 639
MlyI GAGTC 2 cut(s) 145, 377
MnlI CCTC 9 cut(s) 10, 13, 40, 91, 172, 208, 331, 451, 599
MseI TTAA 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 2 cut(s) 109, 296
NlaIII CATG 3 cut(s) 87, 116, 327
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 3 cut(s) 120, 217, 380
PkrI GCNGC 3 cut(s) 248, 350, 508
PleI GAGTC 2 cut(s) 144, 377
PpsI GAGTC 2 cut(s) 144, 377
PshAI GACNNNNGTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 319
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 247, 349, 507
Sau3AI GATC 2 cut(s) 109, 296
SchI GAGTC 2 cut(s) 145, 377
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 83
SetI ASST 9 cut(s) 33, 80, 108, 132, 314, 472, 567, 577, 637
SfaNI GCATC 2 cut(s) 158, 242
SpeI ACTAGT 1 cut(s) 493
Sse9I AATT 4 cut(s) 205, 262, 555, 639
SsiI CCGC 2 cut(s) 147, 246
SspMI CTAG 2 cut(s) 6, 494
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 214, 442, 664
TaiI ACGT 2 cut(s) 132, 567
TaqI TCGA 2 cut(s) 295, 377
TasI AATT 4 cut(s) 205, 262, 555, 639
TatI WGTACW 1 cut(s) 488
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 439, 447, 601
TseFI GTSAC 3 cut(s) 120, 217, 380
TseI GCWGC 2 cut(s) 348, 506
Tsp45I GTSAC 3 cut(s) 120, 217, 380
TspDTI ATGAA 4 cut(s) 54, 296, 605, 609
TspRI CASTG 3 cut(s) 439, 447, 601
XapI RAATTY 3 cut(s) 205, 262, 639
XspI CTAG 2 cut(s) 6, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.