Rh7CG471300

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000316
Physical Location & Seq
Reverse (-)
63210490 .. 63218091
7602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG471300.1

Sequence Viewer

Length: 1542 bp
ATGCATCAGCAGAACTTGGATTTCACCCAGATAAAACTTGAATGGTTCATTTGCTCATATTGTCATTCAACATCTTCTCACTGTGAGGAAGTGCAAGTGTTTGTGATCGGGACCTTTGCACAAGGTTTGGAGTTTGAGAGGACAAGGAGCTGGTCCAAAAAATGCTACACCATTCTTGGGCAGAAGGAGGTTGAGGAGCTGAGACACAAGCTTGCAAATGTTTCATCTACTAGTGGTGTGGAGAACAGTGCTCAGAAACTCAGAGAAAACTACCTGCAGAAGTTGACTTTCCTCGAAGATCAGGTTACGGTGTTGACGAGGAAGCTAGATGCTCAATCTCAACTCTCAATCCAAAGAAGAAGAGGGGACGAGTCAGCAAAGCCGTTCCAGTTTGAGATTCAGAGATTGAAGGCTCAGAAGGTTCAAATGCAATGTAAGATGAAACTAGAATCTGTGCAGTTCAGATTGCATAAAGCTTTGTTGGACAAGGAAGTTCTTCAGCTCAAGAAAGAGAGTAGGAAGAATAAACATGAGATGCACAAGCTATTGGCCTCCAATCAAAGACTGAAGACTGTTTTGCGTCGAAAGACTGAAGAAGCATCTGTGGCTACTAAACAGCTGAGACGGCTCTTAGAATCTCGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGGTGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGACCTATGTGCTATATATGAACGTCAAATAGAAGAGATGGTGGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGAGGCACTACAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGCTTTGAGAAGGATTTAGATATAACAGACCTGAAGGCTCAAGTAGTCAGCCTCAGTAGTATGGTTGAACAATTAAGATTACACAAGGCTGAGCTTGATCATGGGAAGTCACAGGGCGTTAGGAGTCAGCATACTGCATCTGTTGGGAGCAGTTACAAGTTAGTGGAGGACATTAGTCCATCTGAATCAGAAAATTCCACAGTTGGAACATCTAAAACGGCAGCTCCAGTTTGCTGCTCATGCACTAAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGCATCCAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACTATCAGAGATTGCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTTCAGAAGCCTGCTGAACCGGAAGGGAACTTTGGAGCAATAAAGAAACCCTTAACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCAAGAAAAAAGGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAGACCCCTCAGTGCCAGTAAATATGGAAGGAAATGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

513

Amino Acids

57.15

Weight (kDa)

8.89

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 61 - 171 9.4e-23 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 1175
AccI GTMKAC 1 cut(s) 1500
AclWI GGATC 1 cut(s) 1149
AcsI RAATTY 2 cut(s) 1063, 1120
AcuI CTGAAG 7 cut(s) 482, 587, 612, 744, 923, 1325, 1344
AfaI GTAC 1 cut(s) 1435
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 7 cut(s) 41, 69, 409, 425, 742, 938, 1284
AhlI ACTAGT 2 cut(s) 230, 1351
AjnI CCWGG 2 cut(s) 852, 1450
AjuI GAANNNNNNNTTGG 2 cut(s) 1368, 1400
Alw21I GWGCWC 3 cut(s) 253, 848, 1351
Alw26I GTCTC 2 cut(s) 196, 616
Alw44I GTGCAC 1 cut(s) 1347
AlwI GGATC 1 cut(s) 1149
AoxI GGCC 2 cut(s) 549, 1453
ApaLI GTGCAC 1 cut(s) 1347
ApeKI GCWGC 5 cut(s) 1091, 1104, 1193, 1206, 1442
ApoI RAATTY 2 cut(s) 1063, 1120
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 3 cut(s) 111, 153, 1454
AsuHPI GGTGA 2 cut(s) 16, 1441
AvaII GGWCC 2 cut(s) 111, 153
BaeGI GKGCMC 1 cut(s) 1351
BanI GGYRCC 1 cut(s) 1175
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 3 cut(s) 253, 848, 1351
BbvI GCAGC 5 cut(s) 1091, 1103, 1205, 1218, 1429
BccI CCATC 2 cut(s) 775, 1057
BceAI ACGGC 3 cut(s) 367, 641, 1104
BciT130I CCWGG 2 cut(s) 854, 1452
BclI TGATCA 1 cut(s) 967
BcoDI GTCTC 2 cut(s) 196, 616
BcuI ACTAGT 2 cut(s) 230, 1351
BfaI CTAG 4 cut(s) 231, 326, 446, 1352
BfmI CTRYAG 2 cut(s) 275, 1497
BfuAI ACCTGC 1 cut(s) 282
BisI GCNGC 5 cut(s) 1092, 1105, 1194, 1207, 1443
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 5 cut(s) 1093, 1106, 1195, 1208, 1444
Bme1390I CCNGG 2 cut(s) 854, 1452
Bme18I GGWCC 2 cut(s) 111, 153
BmgT120I GGNCC 3 cut(s) 111, 153, 1454
BmiI GGNNCC 2 cut(s) 112, 1177
BmrFI CCNGG 2 cut(s) 854, 1452
BmsI GCATC 6 cut(s) 13, 319, 525, 608, 1016, 1205
BoxI GACNNNNGTC 1 cut(s) 1044
BpiI GAAGAC 1 cut(s) 575
BpmI CTGGAG 1 cut(s) 1080
Bpu1102I GCTNAGC 1 cut(s) 960
BpuEI CTTGAG 2 cut(s) 488, 894
BsaJI CCNNGG 1 cut(s) 1158
BsaWI WCCGGW 1 cut(s) 1372
BsaXI ACNNNNNCTCC 2 cut(s) 1078, 1108
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 4 cut(s) 388, 1097, 1290, 1514
Bse3DI GCAATG 2 cut(s) 437, 1338
BseBI CCWGG 2 cut(s) 854, 1452
BseDI CCNNGG 1 cut(s) 1158
BseGI GGATG 1 cut(s) 1196
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 2 cut(s) 437, 1338
BseMII CTCAG 9 cut(s) 191, 266, 274, 428, 611, 707, 937, 951, 1521
BseNI ACTGG 4 cut(s) 388, 1097, 1290, 1514
BseRI GAGGAG 2 cut(s) 209, 803
BseSI GKGCMC 1 cut(s) 1351
BseXI GCAGC 5 cut(s) 1091, 1103, 1205, 1218, 1429
BsgI GTGCAG 4 cut(s) 476, 722, 1212, 1225
BshFI GGCC 2 cut(s) 551, 1455
BshNI GGYRCC 1 cut(s) 1175
BsiHKAI GWGCWC 3 cut(s) 253, 848, 1351
BsiSI CCGG 1 cut(s) 1373
BslFI GGGAC 3 cut(s) 124, 380, 1208
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 196, 616
BsmBI CGTCTC 1 cut(s) 616
BsmFI GGGAC 3 cut(s) 124, 380, 1208
BsnI GGCC 2 cut(s) 551, 1455
Bsp1286I GDGCHC 3 cut(s) 253, 848, 1351
Bsp143I GATC 4 cut(s) 105, 298, 967, 1154
Bsp1720I GCTNAGC 1 cut(s) 960
BspANI GGCC 2 cut(s) 551, 1455
BspCNI CTCAG 9 cut(s) 192, 265, 273, 427, 612, 706, 936, 952, 1520
BspLI GGNNCC 2 cut(s) 112, 1177
BspMAI CTGCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 1149
BspT107I GGYRCC 1 cut(s) 1175
BsrDI GCAATG 2 cut(s) 437, 1338
BsrI ACTGG 4 cut(s) 388, 1097, 1290, 1514
BssECI CCNNGG 1 cut(s) 1158
BssMI GATC 4 cut(s) 105, 298, 967, 1154
BssT1I CCWWGG 1 cut(s) 1158
Bst2UI CCWGG 2 cut(s) 854, 1452
Bst4CI ACNGT 7 cut(s) 83, 248, 310, 574, 1072, 1300, 1498
Bst6I CTCTTC 3 cut(s) 355, 771, 1298
BstC8I GCNNGC 3 cut(s) 213, 1365, 1479
BstF5I GGATG 1 cut(s) 1196
BstKTI GATC 4 cut(s) 108, 301, 970, 1157
BstMAI GTCTC 2 cut(s) 196, 616
BstMBI GATC 4 cut(s) 105, 298, 967, 1154
BstMWI GCNNNNNNNGC 3 cut(s) 605, 625, 1110
BstNI CCWGG 2 cut(s) 854, 1452
BstPAI GACNNNNGTC 1 cut(s) 1044
BstSCI CCNGG 2 cut(s) 852, 1450
BstSFI CTRYAG 2 cut(s) 275, 1497
BstSLI GKGCMC 1 cut(s) 1351
BstV1I GCAGC 5 cut(s) 1091, 1103, 1205, 1218, 1429
BstV2I GAAGAC 1 cut(s) 575
BsuRI GGCC 2 cut(s) 551, 1455
BtsCI GGATG 1 cut(s) 1196
BtsIMutI CAGTG 5 cut(s) 79, 253, 1297, 1305, 1515
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 213, 1365, 1479
Cfr13I GGNCC 3 cut(s) 111, 153, 1454
CseI GACGC 1 cut(s) 569
Csp6I GTAC 1 cut(s) 1434
CviAII CATG 6 cut(s) 530, 716, 849, 971, 1110, 1182
CviQI GTAC 1 cut(s) 1434
DpnI GATC 4 cut(s) 107, 300, 969, 1156
DpnII GATC 4 cut(s) 105, 298, 967, 1154
Eam1104I CTCTTC 3 cut(s) 355, 771, 1298
EarI CTCTTC 3 cut(s) 355, 771, 1298
Eco130I CCWWGG 1 cut(s) 1158
Eco47I GGWCC 2 cut(s) 111, 153
Eco57I CTGAAG 7 cut(s) 482, 587, 612, 744, 923, 1325, 1344
EcoO109I RGGNCCY 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 1120
EcoRII CCWGG 2 cut(s) 852, 1450
EcoT14I CCWWGG 1 cut(s) 1158
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 1158
Esp3I CGTCTC 1 cut(s) 616
FaeI CATG 6 cut(s) 533, 719, 852, 974, 1113, 1185
FalI AAGNNNNNCTT 2 cut(s) 1388, 1420
FaqI GGGAC 3 cut(s) 124, 380, 1208
FatI CATG 6 cut(s) 529, 715, 848, 970, 1109, 1181
FbaI TGATCA 1 cut(s) 967
FblI GTMKAC 1 cut(s) 1500
Fnu4HI GCNGC 5 cut(s) 1092, 1105, 1194, 1207, 1443
FokI GGATG 1 cut(s) 1183
Fsp4HI GCNGC 5 cut(s) 1092, 1105, 1194, 1207, 1443
FspBI CTAG 4 cut(s) 231, 326, 446, 1352
GluI GCNGC 5 cut(s) 1092, 1105, 1194, 1207, 1443
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 2 cut(s) 551, 1455
HapII CCGG 1 cut(s) 1373
HgaI GACGC 1 cut(s) 569
Hin1II CATG 6 cut(s) 533, 719, 852, 974, 1113, 1185
HincII GTYRAC 3 cut(s) 285, 315, 868
HindII GTYRAC 3 cut(s) 285, 315, 868
HindIII AAGCTT 3 cut(s) 209, 474, 800
HinfI GANTC 8 cut(s) 371, 397, 449, 635, 994, 1055, 1241, 1483
HpaII CCGG 1 cut(s) 1373
HphI GGTGA 2 cut(s) 16, 1441
Hpy166II GTNNAC 5 cut(s) 285, 315, 868, 1349, 1501
Hpy188III TCNNGA 2 cut(s) 109, 505
Hpy8I GTNNAC 5 cut(s) 285, 315, 868, 1349, 1501
Hpy99I CGWCG 1 cut(s) 585
HpyAV CCTTC 8 cut(s) 178, 403, 412, 874, 898, 1319, 1370, 1520
HpyCH4III ACNGT 7 cut(s) 83, 248, 310, 574, 1072, 1300, 1498
HpyCH4IV ACGT 1 cut(s) 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 605, 625, 1110
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 6 cut(s) 533, 719, 852, 974, 1113, 1185
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 4 cut(s) 105, 298, 967, 1154
LmnI GCTCC 5 cut(s) 147, 196, 1017, 1099, 1388
Lsp1109I GCAGC 5 cut(s) 1091, 1103, 1205, 1218, 1429
LweI GCATC 6 cut(s) 13, 319, 525, 608, 1016, 1205
MaeI CTAG 4 cut(s) 231, 326, 446, 1352
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 6 cut(s) 304, 727, 978, 1022, 1238, 1492
MalI GATC 4 cut(s) 107, 300, 969, 1156
MboI GATC 4 cut(s) 105, 298, 967, 1154
MhlI GDGCHC 3 cut(s) 253, 848, 1351
MluCI AATT 5 cut(s) 708, 941, 1063, 1120, 1413
MlyI GAGTC 3 cut(s) 380, 1003, 1235
MmeI TCCRAC 2 cut(s) 462, 1054
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 3 cut(s) 804, 944, 1406
MslI CAYNNNNRTG 2 cut(s) 1201, 1427
MspA1I CMGCKG 2 cut(s) 619, 697
MspI CCGG 1 cut(s) 1373
MspR9I CCNGG 2 cut(s) 854, 1452
MvaI CCWGG 2 cut(s) 854, 1452
MwoI GCNNNNNNNGC 3 cut(s) 605, 625, 1110
NdeII GATC 4 cut(s) 105, 298, 967, 1154
NlaIII CATG 6 cut(s) 533, 719, 852, 974, 1113, 1185
NlaIV GGNNCC 2 cut(s) 112, 1177
NmuCI GTSAC 3 cut(s) 727, 978, 1238
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 5 cut(s) 397, 449, 635, 1055, 1483
PkrI GCNGC 5 cut(s) 1093, 1106, 1195, 1208, 1444
PleI GAGTC 3 cut(s) 379, 1002, 1235
PpsI GAGTC 3 cut(s) 379, 1002, 1235
PpuMI RGGWCCY 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 1044
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 852, 1450
PspGI CCWGG 2 cut(s) 852, 1450
PspN4I GGNNCC 2 cut(s) 112, 1177
PspPI GGNCC 3 cut(s) 111, 153, 1454
PspPPI RGGWCCY 1 cut(s) 111
PstI CTGCAG 1 cut(s) 279
PvuII CAGCTG 2 cut(s) 619, 697
RsaI GTAC 1 cut(s) 1435
RsaNI GTAC 1 cut(s) 1434
RseI CAYNNNNRTG 2 cut(s) 1201, 1427
SaqAI TTAA 3 cut(s) 804, 944, 1406
SatI GCNGC 5 cut(s) 1092, 1105, 1194, 1207, 1443
Sau3AI GATC 4 cut(s) 105, 298, 967, 1154
Sau96I GGNCC 3 cut(s) 111, 153, 1454
SchI GAGTC 3 cut(s) 380, 1003, 1235
ScrFI CCNGG 2 cut(s) 854, 1452
SduI GDGCHC 3 cut(s) 253, 848, 1351
SfaNI GCATC 6 cut(s) 13, 319, 525, 608, 1016, 1205
SfcI CTRYAG 2 cut(s) 275, 1497
SinI GGWCC 2 cut(s) 111, 153
SmiMI CAYNNNNRTG 2 cut(s) 1201, 1427
SmlI CTYRAG 2 cut(s) 503, 909
SmoI CTYRAG 2 cut(s) 503, 909
SpeI ACTAGT 2 cut(s) 230, 1351
Sse9I AATT 5 cut(s) 708, 941, 1063, 1120, 1413
SspMI CTAG 4 cut(s) 231, 326, 446, 1352
StyD4I CCNGG 2 cut(s) 852, 1450
StyI CCWWGG 1 cut(s) 1158
TaaI ACNGT 7 cut(s) 83, 248, 310, 574, 1072, 1300, 1498
TaiI ACGT 1 cut(s) 769
TaqI TCGA 4 cut(s) 294, 583, 1153, 1235
TasI AATT 5 cut(s) 708, 941, 1063, 1120, 1413
TatI WGTACW 1 cut(s) 1433
TfiI GAWTC 5 cut(s) 397, 449, 635, 1055, 1483
Tru1I TTAA 3 cut(s) 804, 944, 1406
Tru9I TTAA 3 cut(s) 804, 944, 1406
TscAI CASTG 5 cut(s) 86, 253, 1297, 1305, 1515
TseFI GTSAC 3 cut(s) 727, 978, 1238
TseI GCWGC 5 cut(s) 1091, 1104, 1193, 1206, 1442
Tsp45I GTSAC 3 cut(s) 727, 978, 1238
TspDTI ATGAA 6 cut(s) 37, 213, 455, 777, 825, 1154
TspRI CASTG 5 cut(s) 86, 253, 1297, 1305, 1515
VneI GTGCAC 1 cut(s) 1347
VpaK11BI GGWCC 2 cut(s) 111, 153
XapI RAATTY 2 cut(s) 1063, 1120
XmiI GTMKAC 1 cut(s) 1500
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 4 cut(s) 231, 326, 446, 1352
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.