Rh7AG451200

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000316
Physical Location & Seq
Reverse (-)
61712894 .. 61720227
7334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG451200.1

Sequence Viewer

Length: 1617 bp
ATGAAGGGTCTAGATAAAAGAAGAGAAGGGATCATGAAGAAGAAGAAGAAGAAGAAGAGGGTGGAGGAGGAAGACAAGGATTCAGAGGATTGGTGCTTCTGCTGCTATGATGGTGGAGATCTTATGATTTGCGACCACAAGAGTTGCTTAAAAGTGTATCATCCAGGATGTGTAGGAAAAAAGAAAAACTCCATGTACTCTGGAAAGCGCTGGACTTGTAGTAGGCATTCTTGTGTAGTGTGCTCTGGTACCTCAAGGTTTTATTGCCTTTGTTGTCCACATGCATTATGTAGAGATTGCATAGGTGCTTCTGAACTTGCACTACTAAGGGGGAAGAATGGCTTGTGCAAGAGCTGTGTAAAGCGTATTCTGCTGGCAAAAGAAAACTCAGAATATGGTTTAGAGGGAGAGAAAATAGTCTTAGAGGATCAAGATGAATGGCTATTCAAAGAATATTGGGAGATCGTAAAGGAAAAGGAAGGATTGACCTCTGGCGATGTTTATTCAGCAAATGCCAATTTAAAGAAGAGAGAAAATCAAAGCTGCAGATTCTTACCTATAAATATTAGTGAGAGTGATGAAAGTAAGGACTTGACAATGTCAGATAGCGACACTAGTGGCACTGGTGTTACAGAAATTCAGAAGCCAATGAGATTAAGAAAGGGATCTAAGCGACTAGAGTTTATAGGATGGGGTTCTAAACCTCTCATTGAGTTTCTAAGATCCATTGGGAAGGATACAACTGAGAAGATATCCCAGCTTGATTTGGACAATATTATCTGTAACTACATCAGAGATAAAGAGCTTTATGTGACCAAAGACAAGAGAAAGGCTCTATGTGATCAAAGTCTGCGATCCATTTTCAGAACGAAATTTGTATTCCTGGTAAGGATATATGGTCTTCTAGGGGAACATCTTGTCGAGAACATAACAGAGGATAGTGGAAGCGAGGATGAGGAAGAAATCAAATTGGAAGATAAGAACAATGGTACTACGCATGAACGCAAGAAGAGAAGAGTGAGCTCTGATACAACCATAGCATCTGATGAAAAGAAAGCAAGTCCTAGATTCCAAAAGAGCTGTTTCGCATCTATTATCCCTGAGAATATGAAGCTTGTTTACATAAAGAGGAGCTTACTGGAGAAGTTACTGAAGGAGCCTGATCATTCGGAAAGCAAGGTACTAGGGAGTTTTGTGAGAGTGAAAAATAACCCCCTAGACTACCTTCAGAGAAATACTCACCAATTTACACAAGTTAAAGGCATAAAGGAAATCTCAGCAACCAATGGTGAGGGCAATAAAATTCTCCTGCAAGTTTCCTATTTTGGAAACGATATTCCCCTTTCTCTGCTTTCAGATTCTAACTTCAGTCAGGAAGAGTGTGAAGATTTGTGCCAAAACGTGGCAAATGGCTATCTAAAGAAACCTACAGTTGTTGAGTTTGAAAAGAAGGCAAGAGAACTGCATCAGGACATAACTAAGCATTGGATTGAAAAGGAGTTGGTGAGATTGCAGAATTGTGTTGATTGGGCAAATGAGAAGGGATGGAGAAGAGAATATCCTTCCATAGTATTTATGATTTCTTTTTTCATCATTTTGAATGCTAATTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

538

Amino Acids

61.93

Weight (kDa)

8.51

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 234 - 306 1.4e-07 SWIB/MDM2 domain
Plus-3 PF03126 369 - 468 1.2e-14 Plus-3 domain
NERD_plant PF25980 490 - 523 6e-17 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 1402
AclWI GGATC 5 cut(s) 38, 435, 673, 717, 849
AcsI RAATTY 3 cut(s) 636, 872, 1302
AcuI CTGAAG 3 cut(s) 1172, 1211, 1351
AfaI GTAC 4 cut(s) 197, 250, 991, 1182
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 1402
AgsI TTSAA 4 cut(s) 448, 1445, 1493, 1600
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 2 cut(s) 163, 882
AluBI AGCT 8 cut(s) 354, 543, 760, 805, 1023, 1080, 1114, 1134
AluI AGCT 8 cut(s) 354, 543, 760, 805, 1023, 1080, 1114, 1134
Alw21I GWGCWC 2 cut(s) 245, 1025
AlwI GGATC 5 cut(s) 38, 435, 673, 717, 849
Aor51HI AGCGCT 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 102, 543
ApoI RAATTY 3 cut(s) 636, 872, 1302
Asp718I GGTACC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 1232, 1301, 1516
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 1025
BarI GAAGNNNNNNTAC 2 cut(s) 1103, 1135
BbsI GAAGAC 2 cut(s) 78, 893
Bbv12I GWGCWC 2 cut(s) 245, 1025
BbvI GCAGC 2 cut(s) 89, 530
BccI CCATC 3 cut(s) 104, 684, 1539
BciT130I CCWGG 2 cut(s) 165, 884
BciVI GTATCC 1 cut(s) 730
BclI TGATCA 2 cut(s) 841, 1162
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 7 cut(s) 11, 615, 677, 905, 1065, 1184, 1217
BfmI CTRYAG 2 cut(s) 544, 1428
BfoI RGCGCY 1 cut(s) 211
BfuI GTATCC 1 cut(s) 730
BglII AGATCT 1 cut(s) 118
BisI GCNGC 2 cut(s) 103, 544
BlsI GCNGC 2 cut(s) 104, 545
Bme1390I CCNGG 2 cut(s) 165, 884
BmiI GGNNCC 2 cut(s) 250, 1158
BmrFI CCNGG 2 cut(s) 165, 884
BmsI GCATC 3 cut(s) 1049, 1097, 1474
BpiI GAAGAC 2 cut(s) 78, 893
BplI GAGNNNNNCTC 4 cut(s) 817, 849, 1222, 1254
BpmI CTGGAG 1 cut(s) 1160
BpuEI CTTGAG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 1402
Bse1I ACTGG 2 cut(s) 628, 1143
BseBI CCWGG 2 cut(s) 165, 884
BseGI GGATG 5 cut(s) 160, 173, 695, 958, 1550
BseLI CCNNNNNNNGG 1 cut(s) 1402
BseMII CTCAG 4 cut(s) 402, 735, 1092, 1290
BseNI ACTGG 2 cut(s) 628, 1143
BseRI GAGGAG 2 cut(s) 80, 1144
BseXI GCAGC 2 cut(s) 89, 530
BseYI CCCAGC 1 cut(s) 756
BshNI GGYRCC 1 cut(s) 248
BsiHKAI GWGCWC 2 cut(s) 245, 1025
BslI CCNNNNNNNGG 1 cut(s) 1402
BsmI GAATGC 2 cut(s) 226, 1606
Bsp1286I GDGCHC 2 cut(s) 245, 1025
Bsp143I GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
BspCNI CTCAG 4 cut(s) 401, 736, 1093, 1289
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 250, 1158
BspMAI CTGCAG 1 cut(s) 548
BspPI GGATC 5 cut(s) 38, 435, 673, 717, 849
BspT107I GGYRCC 1 cut(s) 248
BsrI ACTGG 2 cut(s) 628, 1143
BssMI GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
Bst2UI CCWGG 2 cut(s) 165, 884
Bst4CI ACNGT 1 cut(s) 1432
Bst6I CTCTTC 7 cut(s) 16, 50, 521, 1004, 1009, 1371, 1546
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 9 cut(s) 326, 388, 421, 669, 719, 744, 1101, 1276, 1479
BstF5I GGATG 5 cut(s) 160, 173, 695, 958, 1550
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 9 cut(s) 33, 121, 430, 465, 668, 725, 844, 857, 1165
BstMBI GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 102, 370
BstNI CCWGG 2 cut(s) 165, 884
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 163, 882
BstSFI CTRYAG 2 cut(s) 544, 1428
BstV1I GCAGC 2 cut(s) 89, 530
BstV2I GAAGAC 2 cut(s) 78, 893
BstX2I RGATCY 3 cut(s) 118, 665, 722
BstYI RGATCY 3 cut(s) 118, 665, 722
BsuI GTATCC 1 cut(s) 730
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 5 cut(s) 160, 173, 695, 958, 1550
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 210
Csp6I GTAC 4 cut(s) 196, 249, 990, 1181
CspCI CAANNNNNGTGG 2 cut(s) 125, 160
CviAII CATG 4 cut(s) 34, 193, 281, 998
CviQI GTAC 4 cut(s) 196, 249, 990, 1181
DdeI CTNAG 9 cut(s) 326, 388, 421, 669, 719, 744, 1101, 1276, 1479
DpnI GATC 9 cut(s) 32, 120, 429, 464, 667, 724, 843, 856, 1164
DpnII GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 7 cut(s) 16, 50, 521, 1004, 1009, 1371, 1546
EarI CTCTTC 7 cut(s) 16, 50, 521, 1004, 1009, 1371, 1546
Ecl136II GAGCTC 1 cut(s) 1023
Eco24I GRGCYC 1 cut(s) 1025
Eco32I GATATC 1 cut(s) 753
Eco47III AGCGCT 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 1023
Eco57I CTGAAG 3 cut(s) 1172, 1211, 1351
EcoICRI GAGCTC 1 cut(s) 1023
EcoRII CCWGG 2 cut(s) 163, 882
EcoRV GATATC 1 cut(s) 753
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 1025
FaeI CATG 4 cut(s) 37, 196, 284, 1001
FalI AAGNNNNNCTT 6 cut(s) 131, 163, 326, 358, 1118, 1150
FatI CATG 4 cut(s) 33, 192, 280, 997
FbaI TGATCA 2 cut(s) 841, 1162
Fnu4HI GCNGC 2 cut(s) 103, 544
FokI GGATG 5 cut(s) 147, 180, 702, 965, 1557
FriOI GRGCYC 1 cut(s) 1025
Fsp4HI GCNGC 2 cut(s) 103, 544
FspBI CTAG 7 cut(s) 11, 615, 677, 905, 1065, 1184, 1217
GlaI GCGC 1 cut(s) 209
GluI GCNGC 2 cut(s) 103, 544
GsaI CCCAGC 1 cut(s) 760
GsuI CTGGAG 1 cut(s) 1160
HaeII RGCGCY 1 cut(s) 211
HhaI GCGC 1 cut(s) 210
Hin1II CATG 4 cut(s) 37, 196, 284, 1001
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 4 cut(s) 80, 549, 1068, 1358
HphI GGTGA 3 cut(s) 1232, 1301, 1516
Hpy166II GTNNAC 2 cut(s) 278, 1120
Hpy188III TCNNGA 7 cut(s) 11, 34, 201, 431, 922, 1373, 1469
Hpy8I GTNNAC 2 cut(s) 278, 1120
HpyAV CCTTC 8 cut(s) 20, 473, 727, 1147, 1235, 1444, 1534, 1572
HpyCH4III ACNGT 1 cut(s) 1432
HpyCH4IV ACGT 1 cut(s) 1401
HpyCH4V TGCA 8 cut(s) 284, 300, 320, 348, 546, 1312, 1465, 1513
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 370
HpyF3I CTNAG 9 cut(s) 326, 388, 421, 669, 719, 744, 1101, 1276, 1479
HpySE526I ACGT 1 cut(s) 1401
Hsp92II CATG 4 cut(s) 37, 196, 284, 1001
HspAI GCGC 1 cut(s) 208
KpnI GGTACC 1 cut(s) 252
Ksp22I TGATCA 2 cut(s) 841, 1162
Kzo9I GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
LmnI GCTCC 2 cut(s) 1131, 1156
Lsp1109I GCAGC 2 cut(s) 89, 530
LweI GCATC 3 cut(s) 1049, 1097, 1474
MaeI CTAG 7 cut(s) 11, 615, 677, 905, 1065, 1184, 1217
MaeII ACGT 1 cut(s) 1401
MaeIII GTNAC 4 cut(s) 628, 782, 811, 1146
MalI GATC 9 cut(s) 32, 120, 429, 464, 667, 724, 843, 856, 1164
MboI GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
MflI RGATCY 3 cut(s) 118, 665, 722
MhlI GDGCHC 2 cut(s) 245, 1025
MluCI AATT 8 cut(s) 517, 636, 872, 968, 1244, 1302, 1516, 1606
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 4 cut(s) 149, 521, 656, 1257
MslI CAYNNNNRTG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 165, 884
Mva1269I GAATGC 2 cut(s) 226, 1606
MvaI CCWGG 2 cut(s) 165, 884
MwoI GCNNNNNNNGC 2 cut(s) 102, 370
NdeII GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
NlaIII CATG 4 cut(s) 37, 196, 284, 1001
NlaIV GGNNCC 2 cut(s) 250, 1158
NmuCI GTSAC 1 cut(s) 811
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 284
PagI TCATGA 1 cut(s) 33
PctI GAATGC 2 cut(s) 226, 1606
PfeI GAWTC 4 cut(s) 80, 549, 1068, 1358
PflFI GACNNNGTC 1 cut(s) 598
PflMI CCANNNNNTGG 1 cut(s) 1402
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 2 cut(s) 104, 545
Psp124BI GAGCTC 1 cut(s) 1025
Psp6I CCWGG 2 cut(s) 163, 882
PspFI CCCAGC 1 cut(s) 756
PspGI CCWGG 2 cut(s) 163, 882
PspN4I GGNNCC 2 cut(s) 250, 1158
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
PstI CTGCAG 1 cut(s) 548
PsuI RGATCY 3 cut(s) 118, 665, 722
PsyI GACNNNGTC 1 cut(s) 598
RsaI GTAC 4 cut(s) 197, 250, 991, 1182
RsaNI GTAC 4 cut(s) 196, 249, 990, 1181
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 1025
SaqAI TTAA 4 cut(s) 149, 521, 656, 1257
SatI GCNGC 2 cut(s) 103, 544
Sau3AI GATC 9 cut(s) 30, 118, 427, 462, 665, 722, 841, 854, 1162
ScrFI CCNGG 2 cut(s) 165, 884
SduI GDGCHC 2 cut(s) 245, 1025
SfaNI GCATC 3 cut(s) 1049, 1097, 1474
SfcI CTRYAG 2 cut(s) 544, 1428
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 8 cut(s) 517, 636, 872, 968, 1244, 1302, 1516, 1606
SspI AATATT 3 cut(s) 455, 565, 775
SspMI CTAG 7 cut(s) 11, 615, 677, 905, 1065, 1184, 1217
SstI GAGCTC 1 cut(s) 1025
StyD4I CCNGG 2 cut(s) 163, 882
TaaI ACNGT 1 cut(s) 1432
TaiI ACGT 1 cut(s) 1404
TaqI TCGA 1 cut(s) 921
TasI AATT 8 cut(s) 517, 636, 872, 968, 1244, 1302, 1516, 1606
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 4 cut(s) 80, 549, 1068, 1358
Tru1I TTAA 4 cut(s) 149, 521, 656, 1257
Tru9I TTAA 4 cut(s) 149, 521, 656, 1257
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 102, 543
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 9 cut(s) 17, 50, 450, 594, 1014, 1062, 1124, 1579, 1599
TspRI CASTG 1 cut(s) 628
Tth111I GACNNNGTC 1 cut(s) 598
Van91I CCANNNNNTGG 1 cut(s) 1402
XapI RAATTY 3 cut(s) 636, 872, 1302
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 284
XspI CTAG 7 cut(s) 11, 615, 677, 905, 1065, 1184, 1217
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.