Rorug03G0221800

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000316
Physical Location & Seq
Forward (+)
20205464 .. 20207247
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0221800.1

Sequence Viewer

Length: 726 bp
ATGGCGGCTCCAACGGTGATCACGCCGAAGATCTGGTGTGCGCACATTACAGGAAATCTGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCGCTCAAATACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGCGGGTTGTGGACTGCTTCGATTAAGGGTTTCACCATCGGAGTCGGCCTCAAAGGCGGCCTTGCCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAAGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTGGCTGTATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCTTTATGTGTCTCTCCTCTTCGCAAATTCTGTCTGCTTACATATTGAAGCAGGAGAGTTTGCCTCCATCATATAAATTCTTTCTCAACAAACATGGGGGAAAGGATATCACAATTTTGCAAGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

241

Amino Acids

26.68

Weight (kDa)

11.11

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 42
AccI GTMKAC 2 cut(s) 492, 565
AccII CGCG 1 cut(s) 526
AciI CCGC 3 cut(s) 5, 141, 195
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 2 cut(s) 621, 671
AfiI CCNNNNNNNGG 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 2 cut(s) 304, 643
AluBI AGCT 5 cut(s) 135, 221, 241, 404, 483
AluI AGCT 5 cut(s) 135, 221, 241, 404, 483
Alw26I GTCTC 2 cut(s) 302, 611
AlwI GGATC 1 cut(s) 55
AoxI GGCC 4 cut(s) 184, 196, 388, 519
ApeKI GCWGC 2 cut(s) 472, 509
ApoI RAATTY 2 cut(s) 621, 671
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 3 cut(s) 28, 163, 599
BalI TGGCCA 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 484, 496
BccI CCATC 3 cut(s) 182, 221, 670
BceAI ACGGC 4 cut(s) 99, 154, 188, 497
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 302, 611
BfaI CTAG 2 cut(s) 218, 222
BglI GCCNNNNNGGC 2 cut(s) 192, 518
BglII AGATCT 1 cut(s) 30
BisI GCNGC 4 cut(s) 6, 196, 473, 510
BlsI GCNGC 4 cut(s) 7, 197, 474, 511
Bme1390I CCNGG 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 199
BplI GAGNNNNNCTC 4 cut(s) 171, 203, 643, 675
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 213, 370
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 241, 252, 268
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 2 cut(s) 484, 496
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 4 cut(s) 186, 198, 390, 521
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 302, 611
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 4 cut(s) 186, 198, 390, 521
Bso31I GGTCTC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 18, 30, 60
BspACI CCGC 3 cut(s) 5, 141, 195
BspANI GGCC 4 cut(s) 186, 198, 390, 521
BspCNI CTCAG 3 cut(s) 240, 253, 267
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 302
BssMI GATC 3 cut(s) 18, 30, 60
BssNAI GTATAC 1 cut(s) 493
Bst1107I GTATAC 1 cut(s) 493
Bst4CI ACNGT 6 cut(s) 16, 298, 395, 444, 549, 587
Bst6I CTCTTC 2 cut(s) 96, 619
BstC8I GCNNGC 2 cut(s) 346, 507
BstDEI CTNAG 5 cut(s) 227, 244, 254, 261, 405
BstENI CCTNNNNNAGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 213, 370
BstFNI CGCG 1 cut(s) 526
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 3 cut(s) 21, 33, 63
BstMAI GTCTC 2 cut(s) 302, 611
BstMBI GATC 3 cut(s) 18, 30, 60
BstMWI GCNNNNNNNGC 4 cut(s) 192, 422, 469, 518
BstSCI CCNGG 1 cut(s) 458
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 2 cut(s) 484, 496
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BstZ17I GTATAC 1 cut(s) 493
BsuRI GGCC 4 cut(s) 186, 198, 390, 521
BtsCI GGATG 2 cut(s) 213, 370
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 346, 507
CfoI GCGC 1 cut(s) 43
CviAII CATG 1 cut(s) 689
DdeI CTNAG 5 cut(s) 227, 244, 254, 261, 405
DpnI GATC 3 cut(s) 20, 32, 62
DpnII GATC 3 cut(s) 18, 30, 60
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 2 cut(s) 96, 619
EarI CTCTTC 2 cut(s) 96, 619
Eco31I GGTCTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 703
EcoNI CCTNNNNNAGG 1 cut(s) 253
EcoRV GATATC 1 cut(s) 703
FaeI CATG 1 cut(s) 692
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 296, 328
FaqI GGGAC 1 cut(s) 349
FatI CATG 1 cut(s) 688
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 2 cut(s) 492, 565
Fnu4HI GCNGC 4 cut(s) 6, 196, 473, 510
FokI GGATG 2 cut(s) 200, 377
Fsp4HI GCNGC 4 cut(s) 6, 196, 473, 510
FspAI RTGCGCAY 1 cut(s) 42
FspBI CTAG 2 cut(s) 218, 222
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 1 cut(s) 42
GluI GCNGC 4 cut(s) 6, 196, 473, 510
HaeIII GGCC 4 cut(s) 186, 198, 390, 521
HapII CCGG 1 cut(s) 459
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 692
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 3 cut(s) 124, 180, 225
HpaII CCGG 1 cut(s) 459
HphI GGTGA 3 cut(s) 28, 163, 599
Hpy166II GTNNAC 3 cut(s) 150, 493, 566
Hpy188I TCNGA 4 cut(s) 60, 129, 179, 230
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 3 cut(s) 150, 493, 566
Hpy99I CGWCG 3 cut(s) 75, 78, 120
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 6 cut(s) 16, 298, 395, 444, 549, 587
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 344, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 192, 422, 469, 518
HpyF3I CTNAG 5 cut(s) 227, 244, 254, 261, 405
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 692
HspAI GCGC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 30, 60
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 8 cut(s) 19, 36, 122, 241, 330, 411, 472, 632
Lsp1109I GCAGC 2 cut(s) 484, 496
MaeI CTAG 2 cut(s) 218, 222
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 292, 587
MalI GATC 3 cut(s) 20, 32, 62
MboI GATC 3 cut(s) 18, 30, 60
MboII GAAGA 4 cut(s) 40, 83, 199, 606
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 4 cut(s) 288, 621, 671, 708
MluI ACGCGT 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 2 cut(s) 189, 219
MmeI TCCRAC 1 cut(s) 35
Mox20I TGGCCA 1 cut(s) 521
MscI TGGCCA 1 cut(s) 521
MseI TTAA 2 cut(s) 162, 537
MslI CAYNNNNRTG 1 cut(s) 500
Msp20I TGGCCA 1 cut(s) 521
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 460
MunI CAATTG 1 cut(s) 288
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 4 cut(s) 192, 422, 469, 518
NciI CCSGG 1 cut(s) 460
NdeII GATC 3 cut(s) 18, 30, 60
NlaIII CATG 1 cut(s) 692
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 587
NsbI TGCGCA 1 cut(s) 42
PcsI WCGNNNNNNNCGW 2 cut(s) 476, 553
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 4 cut(s) 7, 197, 474, 511
PleI GAGTC 2 cut(s) 188, 219
PpsI GAGTC 2 cut(s) 188, 219
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 2 cut(s) 162, 537
SatI GCNGC 4 cut(s) 6, 196, 473, 510
Sau3AI GATC 3 cut(s) 18, 30, 60
SchI GAGTC 2 cut(s) 189, 219
ScrFI CCNGG 1 cut(s) 460
SetI ASST 8 cut(s) 107, 137, 223, 243, 314, 406, 485, 571
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 4 cut(s) 288, 621, 671, 708
SsiI CCGC 3 cut(s) 5, 141, 195
SspMI CTAG 2 cut(s) 218, 222
StyD4I CCNGG 1 cut(s) 458
TaaI ACNGT 6 cut(s) 16, 298, 395, 444, 549, 587
TaiI ACGT 1 cut(s) 107
TaqI TCGA 2 cut(s) 118, 158
TasI AATT 4 cut(s) 288, 621, 671, 708
TauI GCSGC 2 cut(s) 8, 198
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 162, 537
Tru9I TTAA 2 cut(s) 162, 537
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 2 cut(s) 472, 509
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 366
XagI CCTNNNNNAGG 1 cut(s) 253
XapI RAATTY 2 cut(s) 621, 671
XmiI GTMKAC 2 cut(s) 492, 565
XspI CTAG 2 cut(s) 218, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.