Rroxscaffold_7G00205860

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000316
Physical Location & Seq
Reverse (-)
55548813 .. 55553255
4443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205860.1

Sequence Viewer

Length: 837 bp
ATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTATGTGCTGTATATGAACATCAAATAGAAGAGATGGCTGAGGAGGCTGAAAGGCTTAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGGGGTTGACAGCTTTGAGAAGGATTTAGATATAACAGACCTGTCTGACCTGAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCGCAGGATGTTAGGAGTCAGCATACTGCATCTGTTGGGAGTAGTTACAAGTTAGTGGATGACATCAGTCCATCTGCATCAGAAAATTCCACAGTTGTAACGTCTGAAACTGCATCTCCAGTTTGCTGCTCATATAGTAAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGAAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACTATCAGAGATTTCTAACGGCATTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTACACCAGTGCAGAAGGCTGCTGAACTAGCAGGGAACTTTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGGCCACAAAAAAGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTGGACCCAATTTCCTCAATGCCAGTAAATATGGAAGGCCTAAAGGAAGCAGAAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

29.92

Weight (kDa)

5.55

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HOOK PF05622 22 - 78 4.9e-06 HOOK protein coiled-coil region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 485
AclWI GGATC 1 cut(s) 459
AcsI RAATTY 2 cut(s) 373, 430
AcuI CTGAAG 4 cut(s) 45, 233, 635, 654
AfaI GTAC 2 cut(s) 658, 715
AgsI TTSAA 3 cut(s) 43, 248, 594
AjnI CCWGG 2 cut(s) 153, 730
AluBI AGCT 5 cut(s) 49, 174, 274, 480, 767
AluI AGCT 5 cut(s) 49, 174, 274, 480, 767
Alw21I GWGCWC 1 cut(s) 149
AlwI GGATC 1 cut(s) 459
AoxI GGCC 2 cut(s) 734, 812
ApeKI GCWGC 4 cut(s) 414, 516, 674, 722
ApoI RAATTY 2 cut(s) 373, 430
AspS9I GGNCC 2 cut(s) 734, 779
AsuHPI GGTGA 1 cut(s) 721
AvaII GGWCC 1 cut(s) 779
BanI GGYRCC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 401, 528, 661, 709
BccI CCATC 2 cut(s) 76, 367
BceAI ACGGC 1 cut(s) 592
BciT130I CCWGG 2 cut(s) 155, 732
BclI TGATCA 1 cut(s) 277
BfaI CTAG 1 cut(s) 683
BisI GCNGC 4 cut(s) 415, 517, 675, 723
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 4 cut(s) 416, 518, 676, 724
Bme1390I CCNGG 2 cut(s) 155, 732
Bme18I GGWCC 1 cut(s) 779
BmgT120I GGNCC 2 cut(s) 734, 779
BmiI GGNNCC 2 cut(s) 487, 781
BmrFI CCNGG 2 cut(s) 155, 732
BmsI GCATC 3 cut(s) 326, 374, 410
BoxI GACNNNNGTC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 87
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 468, 731
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bse1I ACTGG 4 cut(s) 407, 600, 662, 798
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 2 cut(s) 155, 732
BseDI CCNNGG 2 cut(s) 468, 731
BseGI GGATG 2 cut(s) 301, 352
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 78, 261
BseNI ACTGG 4 cut(s) 407, 600, 662, 798
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 401, 528, 661, 709
BsgI GTGCAG 2 cut(s) 535, 686
BshFI GGCC 2 cut(s) 736, 814
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 2 cut(s) 736, 814
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 277, 464
Bsp1720I GCTNAGC 1 cut(s) 270
BspANI GGCC 2 cut(s) 736, 814
BspCNI CTCAG 2 cut(s) 79, 262
BspLI GGNNCC 2 cut(s) 487, 781
BspPI GGATC 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 648
BsrI ACTGG 4 cut(s) 407, 600, 662, 798
BssECI CCNNGG 2 cut(s) 468, 731
BssMI GATC 2 cut(s) 277, 464
BssT1I CCWWGG 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 155, 732
Bst4CI ACNGT 3 cut(s) 382, 610, 776
Bst6I CTCTTC 2 cut(s) 72, 608
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 3 cut(s) 87, 270, 510
BstF5I GGATG 2 cut(s) 301, 352
BstKTI GATC 2 cut(s) 280, 467
BstMBI GATC 2 cut(s) 277, 464
BstMWI GCNNNNNNNGC 2 cut(s) 92, 683
BstNI CCWGG 2 cut(s) 155, 732
BstPAI GACNNNNGTC 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 153, 730
BstV1I GCAGC 4 cut(s) 401, 528, 661, 709
BsuRI GGCC 2 cut(s) 736, 814
BtsCI GGATG 2 cut(s) 301, 352
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 4 cut(s) 122, 607, 615, 669
Cac8I GCNNGC 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 734, 779
CseI GACGC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 657, 714
CviAII CATG 4 cut(s) 17, 150, 281, 492
CviQI GTAC 2 cut(s) 657, 714
DdeI CTNAG 3 cut(s) 87, 270, 510
DpnI GATC 2 cut(s) 279, 466
DpnII GATC 2 cut(s) 277, 464
Eam1104I CTCTTC 2 cut(s) 72, 608
EarI CTCTTC 2 cut(s) 72, 608
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 779
Eco57I CTGAAG 4 cut(s) 45, 233, 635, 654
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 153, 730
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 4 cut(s) 20, 153, 284, 495
FaqI GGGAC 1 cut(s) 518
FatI CATG 4 cut(s) 16, 149, 280, 491
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 4 cut(s) 415, 517, 675, 723
FokI GGATG 2 cut(s) 308, 359
Fsp4HI GCNGC 4 cut(s) 415, 517, 675, 723
FspBI CTAG 1 cut(s) 683
GluI GCNGC 4 cut(s) 415, 517, 675, 723
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 2 cut(s) 736, 814
HgaI GACGC 1 cut(s) 220
Hin1II CATG 4 cut(s) 20, 153, 284, 495
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 3 cut(s) 304, 551, 761
HphI GGTGA 1 cut(s) 721
Hpy166II GTNNAC 3 cut(s) 169, 659, 779
Hpy188I TCNGA 7 cut(s) 208, 370, 394, 565, 585, 634, 654
Hpy8I GTNNAC 3 cut(s) 169, 659, 779
HpyAV CCTTC 6 cut(s) 175, 208, 629, 664, 804, 822
HpyCH4III ACNGT 3 cut(s) 382, 610, 776
HpyCH4IV ACGT 1 cut(s) 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 683
HpyF3I CTNAG 3 cut(s) 87, 270, 510
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 4 cut(s) 20, 153, 284, 495
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 277, 464
Lsp1109I GCAGC 4 cut(s) 401, 528, 661, 709
LweI GCATC 3 cut(s) 326, 374, 410
MaeI CTAG 1 cut(s) 683
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 5 cut(s) 28, 332, 385, 548, 770
MalI GATC 2 cut(s) 279, 466
MboI GATC 2 cut(s) 277, 464
MboII GAAGA 2 cut(s) 89, 625
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 5 cut(s) 9, 251, 373, 430, 784
MlyI GAGTC 2 cut(s) 313, 545
MnlI CCTC 7 cut(s) 13, 82, 85, 112, 499, 619, 800
MseI TTAA 2 cut(s) 105, 254
MslI CAYNNNNRTG 1 cut(s) 707
MspR9I CCNGG 2 cut(s) 155, 732
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 2 cut(s) 155, 732
MwoI GCNNNNNNNGC 2 cut(s) 92, 683
NdeII GATC 2 cut(s) 277, 464
NlaIII CATG 4 cut(s) 20, 153, 284, 495
NlaIV GGNNCC 2 cut(s) 487, 781
NmuCI GTSAC 2 cut(s) 28, 548
PceI AGGCCT 1 cut(s) 814
PctI GAATGC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 761
PkrI GCNGC 4 cut(s) 416, 518, 676, 724
PleI GAGTC 2 cut(s) 312, 545
PpsI GAGTC 2 cut(s) 312, 545
PshAI GACNNNNGTC 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 153, 730
PspGI CCWGG 2 cut(s) 153, 730
PspN4I GGNNCC 2 cut(s) 487, 781
PspPI GGNCC 2 cut(s) 734, 779
RsaI GTAC 2 cut(s) 658, 715
RsaNI GTAC 2 cut(s) 657, 714
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 2 cut(s) 105, 254
SatI GCNGC 4 cut(s) 415, 517, 675, 723
Sau3AI GATC 2 cut(s) 277, 464
Sau96I GGNCC 2 cut(s) 734, 779
SchI GAGTC 2 cut(s) 313, 545
ScrFI CCNGG 2 cut(s) 155, 732
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 3 cut(s) 326, 374, 410
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 5 cut(s) 9, 251, 373, 430, 784
SseBI AGGCCT 1 cut(s) 814
SspMI CTAG 1 cut(s) 683
StuI AGGCCT 1 cut(s) 814
StyD4I CCNGG 2 cut(s) 153, 730
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 382, 610, 776
TaiI ACGT 1 cut(s) 392
TaqI TCGA 2 cut(s) 463, 545
TasI AATT 5 cut(s) 9, 251, 373, 430, 784
TatI WGTACW 2 cut(s) 656, 713
TfiI GAWTC 1 cut(s) 761
Tru1I TTAA 2 cut(s) 105, 254
Tru9I TTAA 2 cut(s) 105, 254
TscAI CASTG 4 cut(s) 129, 607, 615, 669
TseFI GTSAC 2 cut(s) 28, 548
TseI GCWGC 4 cut(s) 414, 516, 674, 722
Tsp45I GTSAC 2 cut(s) 28, 548
TspDTI ATGAA 3 cut(s) 78, 126, 464
TspRI CASTG 4 cut(s) 129, 607, 615, 669
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 2 cut(s) 373, 430
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.