pycom08g19270

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000316
Physical Location & Seq
Reverse (-)
19282081 .. 19283155
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19270.2

Sequence Viewer

Length: 489 bp
ATGTTCCTGGAGAACCGATGGGGGAAAGAAAGGCACAAGAATATATCGGATGGGCATCCAAAGCTCTCATCGAGTTCCTCCAATCAATTGGTACAGATACAACGAAAAAATAGTCGCAGTTTGATGTGGAGACGATCATATTTGATTAGGATAAAAATCTATGGTCTTTCGGAGGAACATATGACCGAGAACTTGGTTATGTCGGATGAAAATGATAGTGAACTGGAAGACAAGAAGAAAGATACAATGACAGCAAGCAAGAAGCGAAAACTGAGCTCAGGTATCGCGTCTATTGAAAAGGAAGCGAGTCCTCGCGTCCAGAGAAGTTGTTTTGCATCCATAGTTCCCGAGAATATGAAGCTTGTCTACTTAAGGAGGAGTTTAGTGGGGGAGTTCTTGAAGCAGCCTGAAAACTCCGAAAGCAAGCTACCGGAGACTTTTGCGAGAGTGAAAAATGACGCCAGGCTTCGTCTAACAAATTCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

163

Amino Acids

18.79

Weight (kDa)

9.86

Isoelectric Point (pI)

68.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 366
AccII CGCG 2 cut(s) 287, 315
AcsI RAATTY 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 370
AgsI TTSAA 2 cut(s) 296, 400
AjnI CCWGG 2 cut(s) 6, 461
AluBI AGCT 4 cut(s) 64, 276, 361, 427
AluI AGCT 4 cut(s) 64, 276, 361, 427
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 124, 428
Ama87I CYCGRG 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 403
ApoI RAATTY 1 cut(s) 478
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AvaI CYCGRG 1 cut(s) 347
BanII GRGCYC 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 350, 382
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 415
BccI CCATC 2 cut(s) 12, 44
BciT130I CCWGG 2 cut(s) 8, 463
BcoDI GTCTC 2 cut(s) 124, 428
BfrI CTTAAG 1 cut(s) 370
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme1390I CCNGG 2 cut(s) 8, 463
BmeT110I CYCGRG 1 cut(s) 347
BmrFI CCNGG 2 cut(s) 8, 463
BmsI GCATC 2 cut(s) 64, 344
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 277
BsaBI GATNNNNATC 2 cut(s) 54, 155
BsaHI GRCGYC 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 228
Bse8I GATNNNNATC 2 cut(s) 54, 155
BseBI CCWGG 2 cut(s) 8, 463
BseGI GGATG 4 cut(s) 55, 55, 211, 335
BseJI GATNNNNATC 2 cut(s) 54, 155
BseMII CTCAG 2 cut(s) 263, 291
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 415
Bsh1236I CGCG 2 cut(s) 287, 315
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 124, 428
BsmBI CGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 264, 290
BspFNI CGCG 2 cut(s) 287, 315
BspTI CTTAAG 1 cut(s) 370
BsrI ACTGG 1 cut(s) 228
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 8, 463
BstACI GRCGYC 1 cut(s) 459
BstAFI CTTAAG 1 cut(s) 370
BstC8I GCNNGC 2 cut(s) 256, 425
BstDEI CTNAG 2 cut(s) 272, 277
BstF5I GGATG 4 cut(s) 55, 55, 211, 335
BstFNI CGCG 2 cut(s) 287, 315
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 2 cut(s) 124, 428
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 2 cut(s) 8, 463
BstSCI CCNGG 2 cut(s) 6, 461
BstUI CGCG 2 cut(s) 287, 315
BstV1I GCAGC 1 cut(s) 415
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 88
BtsCI GGATG 4 cut(s) 55, 55, 211, 335
Cac8I GCNNGC 2 cut(s) 256, 425
CseI GACGC 3 cut(s) 276, 304, 467
Csp6I GTAC 1 cut(s) 92
CviJI RGCY 6 cut(s) 64, 276, 361, 406, 427, 466
CviKI_1 RGCY 6 cut(s) 64, 276, 361, 406, 427, 466
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 272, 277
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 6, 461
EcoT38I GRGCYC 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 124
FaiI YATR 8 cut(s) 44, 139, 162, 180, 182, 200, 341, 356
FauNDI CATATG 1 cut(s) 180
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 4 cut(s) 42, 62, 218, 322
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 404
GluI GCNGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 29
HapII CCGG 1 cut(s) 431
HgaI GACGC 3 cut(s) 276, 304, 467
Hin1I GRCGYC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 1 cut(s) 307
HpaII CCGG 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 221, 367
Hpy188I TCNGA 4 cut(s) 49, 172, 205, 418
Hpy188III TCNNGA 3 cut(s) 319, 347, 397
Hpy8I GTNNAC 2 cut(s) 221, 367
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 272, 277
Hsp92I GRCGYC 1 cut(s) 459
Kzo9I GATC 1 cut(s) 134
LpnPI CCDG 8 cut(s) 20, 209, 264, 332, 420, 444, 448, 475
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 2 cut(s) 64, 344
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 2 cut(s) 239, 247
MfeI CAATTG 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 2 cut(s) 86, 478
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 4 cut(s) 88, 166, 321, 369
MseI TTAA 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 370
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 8, 463
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 2 cut(s) 8, 463
MvnI CGCG 2 cut(s) 287, 315
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeI CATATG 1 cut(s) 180
NdeII GATC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 6, 461
PspGI CCWGG 2 cut(s) 6, 461
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 1 cut(s) 134
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 8, 463
SduI GDGCHC 1 cut(s) 278
SetI ASST 5 cut(s) 66, 278, 283, 363, 429
SfaNI GCATC 2 cut(s) 64, 344
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 86, 478
SstI GAGCTC 1 cut(s) 278
StyD4I CCNGG 2 cut(s) 6, 461
TaqI TCGA 1 cut(s) 71
TaqII GACCGA 1 cut(s) 200
TasI AATT 2 cut(s) 86, 478
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TseI GCWGC 1 cut(s) 403
TspDTI ATGAA 2 cut(s) 222, 371
TspGWI ACGGA 1 cut(s) 474
Vha464I CTTAAG 1 cut(s) 370
XapI RAATTY 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.