Rroxscaffold_7G00205820

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000316
Physical Location & Seq
Reverse (-)
55503171 .. 55511511
8341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205820.1

Sequence Viewer

Length: 1215 bp
ATGCGGCGCTTAGAATCTCGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAAAGAGCTATGTGCTGTATATGAACATCAAATAGAAGAGATGGCTGAGGAGGCTGAAACACTTAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAGGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGACCTGTCTGACCTGAAGGCTCAAGTAGCCAGCGTCAGTAGTATGGTTGAACATTTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTTGCAGGTTTTGCATAGAAAGACTGAAGAAGCATCTGTGGCTACTAAACAGCAGATATGGCTCTTAGAATCTCACAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCCATGTGGTGTATATGAACATCAAGTAGAAGAGATGGCTGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGAGGCACTGCAACAAGAAATGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGACCTGTCTGACCTGAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTAGATCATGGGAAGTCGCAGGTCGTTAGGAGTCAGCATACTGCATCTGTTGGGAGTAGTTACAAGTTAGTGGATGACATCAGTCCATCTGCATCAGAAAATTCCACAGTTGTAACATCTGAAACTGCATCTCCAGTTTGCTGCTCATATAGTAAGAATTTTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACTATCAGAGATTTCTAACGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCCGAAGGTGCAATGCTACTTCAGAGTACACTAGTTCAGAAGGCTGCTGAACCAGAGGGAAACTTTGGAGCAAGAAAGAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

44.51

Weight (kDa)

5.2

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 361, 781
AccB1I GGYRCC 1 cut(s) 983
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 957
AcsI RAATTY 2 cut(s) 871, 928
AcuI CTGAAG 6 cut(s) 123, 311, 411, 543, 731, 1133
AfaI GTAC 1 cut(s) 1156
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 121, 326, 541, 746, 1092
AhlI ACTAGT 1 cut(s) 1159
AjnI CCWGG 2 cut(s) 231, 651
AluBI AGCT 9 cut(s) 76, 127, 252, 352, 496, 601, 672, 772, 978
AluI AGCT 9 cut(s) 76, 127, 252, 352, 496, 601, 672, 772, 978
Alw21I GWGCWC 2 cut(s) 227, 647
AlwI GGATC 1 cut(s) 957
ApeKI GCWGC 3 cut(s) 912, 1014, 1172
ApoI RAATTY 2 cut(s) 871, 928
AspLEI GCGC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 983
Bbv12I GWGCWC 2 cut(s) 227, 647
BbvCI CCTCAGC 2 cut(s) 165, 585
BbvI GCAGC 3 cut(s) 899, 1026, 1159
BccI CCATC 3 cut(s) 154, 574, 865
BceAI ACGGC 1 cut(s) 1090
BciT130I CCWGG 2 cut(s) 233, 653
BclI TGATCA 1 cut(s) 355
BcuI ACTAGT 1 cut(s) 1159
BfaI CTAG 2 cut(s) 773, 1160
BfoI RGCGCY 1 cut(s) 10
BfuAI ACCTGC 2 cut(s) 361, 781
BisI GCNGC 4 cut(s) 5, 913, 1015, 1173
BlpI GCTNAGC 2 cut(s) 348, 768
BlsI GCNGC 4 cut(s) 6, 914, 1016, 1174
Bme1390I CCNGG 2 cut(s) 233, 653
BmiI GGNNCC 1 cut(s) 985
BmrFI CCNGG 2 cut(s) 233, 653
BmsI GCATC 6 cut(s) 69, 407, 489, 824, 872, 908
BoxI GACNNNNGTC 1 cut(s) 852
BpmI CTGGAG 1 cut(s) 888
Bpu10I CCTNAGC 2 cut(s) 165, 585
Bpu1102I GCTNAGC 2 cut(s) 348, 768
BpuEI CTTGAG 2 cut(s) 282, 702
BsaJI CCNNGG 1 cut(s) 966
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 905, 1098
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 2 cut(s) 233, 653
BseDI CCNNGG 1 cut(s) 966
BseGI GGATG 1 cut(s) 850
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 6 cut(s) 86, 156, 339, 506, 576, 759
BseNI ACTGG 2 cut(s) 905, 1098
BseRI GAGGAG 2 cut(s) 182, 602
BseXI GCAGC 3 cut(s) 899, 1026, 1159
BsgI GTGCAG 2 cut(s) 1020, 1033
BshNI GGYRCC 1 cut(s) 983
BsiHKAI GWGCWC 2 cut(s) 227, 647
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 1016
Bsp1286I GDGCHC 2 cut(s) 227, 647
Bsp143I GATC 3 cut(s) 355, 775, 962
Bsp1720I GCTNAGC 2 cut(s) 348, 768
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 6 cut(s) 85, 157, 340, 505, 577, 760
BspLI GGNNCC 1 cut(s) 985
BspMI ACCTGC 2 cut(s) 361, 781
BspPI GGATC 1 cut(s) 957
BspT107I GGYRCC 1 cut(s) 983
BsrDI GCAATG 1 cut(s) 1146
BsrI ACTGG 2 cut(s) 905, 1098
BssECI CCNNGG 1 cut(s) 966
BssMI GATC 3 cut(s) 355, 775, 962
BssT1I CCWWGG 1 cut(s) 966
Bst2UI CCWGG 2 cut(s) 233, 653
Bst4CI ACNGT 2 cut(s) 880, 1108
Bst6I CTCTTC 3 cut(s) 150, 570, 1106
BstAPI GCANNNNNTGC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 9 cut(s) 10, 72, 165, 348, 430, 492, 585, 768, 1008
BstF5I GGATG 1 cut(s) 850
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 358, 778, 965
BstMBI GATC 3 cut(s) 355, 775, 962
BstMWI GCNNNNNNNGC 6 cut(s) 170, 302, 376, 404, 424, 590
BstNI CCWGG 2 cut(s) 233, 653
BstPAI GACNNNNGTC 1 cut(s) 852
BstSCI CCNGG 2 cut(s) 231, 651
BstV1I GCAGC 3 cut(s) 899, 1026, 1159
BtsCI GGATG 1 cut(s) 850
BtsI GCAGTG 2 cut(s) 200, 620
BtsIMutI CAGTG 4 cut(s) 200, 620, 1105, 1113
BveI ACCTGC 2 cut(s) 361, 781
Cac8I GCNNGC 1 cut(s) 307
CfoI GCGC 1 cut(s) 9
CseI GACGC 2 cut(s) 298, 718
Csp6I GTAC 1 cut(s) 1155
CviAII CATG 8 cut(s) 95, 228, 359, 515, 549, 648, 779, 990
CviQI GTAC 1 cut(s) 1155
DdeI CTNAG 9 cut(s) 10, 72, 165, 348, 430, 492, 585, 768, 1008
DpnI GATC 3 cut(s) 357, 777, 964
DpnII GATC 3 cut(s) 355, 775, 962
Eam1104I CTCTTC 3 cut(s) 150, 570, 1106
EarI CTCTTC 3 cut(s) 150, 570, 1106
Eco130I CCWWGG 1 cut(s) 966
Eco57I CTGAAG 6 cut(s) 123, 311, 411, 543, 731, 1133
EcoRII CCWGG 2 cut(s) 231, 651
EcoT14I CCWWGG 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 966
FaeI CATG 8 cut(s) 98, 231, 362, 518, 552, 651, 782, 993
FaqI GGGAC 1 cut(s) 1016
FatI CATG 8 cut(s) 94, 227, 358, 514, 548, 647, 778, 989
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 5, 913, 1015, 1173
FokI GGATG 1 cut(s) 857
Fsp4HI GCNGC 4 cut(s) 5, 913, 1015, 1173
FspBI CTAG 2 cut(s) 773, 1160
GlaI GCGC 1 cut(s) 8
GluI GCNGC 4 cut(s) 5, 913, 1015, 1173
GsuI CTGGAG 1 cut(s) 888
HaeII RGCGCY 1 cut(s) 10
HgaI GACGC 2 cut(s) 298, 718
HhaI GCGC 1 cut(s) 9
Hin1II CATG 8 cut(s) 98, 231, 362, 518, 552, 651, 782, 993
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 2 cut(s) 247, 667
HindII GTYRAC 2 cut(s) 247, 667
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 14, 434, 802, 1049
Hpy166II GTNNAC 3 cut(s) 247, 667, 1157
Hpy188I TCNGA 9 cut(s) 286, 706, 868, 892, 1063, 1083, 1132, 1152, 1167
Hpy188III TCNNGA 2 cut(s) 256, 676
Hpy8I GTNNAC 3 cut(s) 247, 667, 1157
HpyAV CCTTC 7 cut(s) 232, 253, 286, 673, 706, 1127, 1162
HpyCH4III ACNGT 2 cut(s) 880, 1108
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 302, 376, 404, 424, 590
HpyF3I CTNAG 9 cut(s) 10, 72, 165, 348, 430, 492, 585, 768, 1008
Hsp92II CATG 8 cut(s) 98, 231, 362, 518, 552, 651, 782, 993
HspAI GCGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 355, 775, 962
LmnI GCTCC 1 cut(s) 1196
Lsp1109I GCAGC 3 cut(s) 899, 1026, 1159
LweI GCATC 6 cut(s) 69, 407, 489, 824, 872, 908
MaeI CTAG 2 cut(s) 773, 1160
MaeIII GTNAC 5 cut(s) 106, 526, 830, 883, 1046
MalI GATC 3 cut(s) 357, 777, 964
MboI GATC 3 cut(s) 355, 775, 962
MboII GAAGA 4 cut(s) 167, 404, 587, 1123
MhlI GDGCHC 2 cut(s) 227, 647
MluCI AATT 5 cut(s) 87, 507, 749, 871, 928
MlyI GAGTC 2 cut(s) 811, 1043
MseI TTAA 4 cut(s) 183, 332, 603, 752
MspA1I CMGCKG 2 cut(s) 76, 496
MspR9I CCNGG 2 cut(s) 233, 653
MvaI CCWGG 2 cut(s) 233, 653
MwoI GCNNNNNNNGC 6 cut(s) 170, 302, 376, 404, 424, 590
NdeII GATC 3 cut(s) 355, 775, 962
NlaIII CATG 8 cut(s) 98, 231, 362, 518, 552, 651, 782, 993
NlaIV GGNNCC 1 cut(s) 985
NmuCI GTSAC 3 cut(s) 106, 526, 1046
PfeI GAWTC 2 cut(s) 14, 434
PkrI GCNGC 4 cut(s) 6, 914, 1016, 1174
PleI GAGTC 2 cut(s) 810, 1043
PpsI GAGTC 2 cut(s) 810, 1043
PshAI GACNNNNGTC 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 231, 651
PspGI CCWGG 2 cut(s) 231, 651
PspN4I GGNNCC 1 cut(s) 985
PvuII CAGCTG 2 cut(s) 76, 496
RsaI GTAC 1 cut(s) 1156
RsaNI GTAC 1 cut(s) 1155
SaqAI TTAA 4 cut(s) 183, 332, 603, 752
SatI GCNGC 4 cut(s) 5, 913, 1015, 1173
Sau3AI GATC 3 cut(s) 355, 775, 962
SchI GAGTC 2 cut(s) 811, 1043
ScrFI CCNGG 2 cut(s) 233, 653
SduI GDGCHC 2 cut(s) 227, 647
SfaNI GCATC 6 cut(s) 69, 407, 489, 824, 872, 908
SmlI CTYRAG 2 cut(s) 297, 717
SmoI CTYRAG 2 cut(s) 297, 717
SpeI ACTAGT 1 cut(s) 1159
Sse9I AATT 5 cut(s) 87, 507, 749, 871, 928
SsiI CCGC 1 cut(s) 4
SspMI CTAG 2 cut(s) 773, 1160
StyD4I CCNGG 2 cut(s) 231, 651
StyI CCWWGG 1 cut(s) 966
TaaI ACNGT 2 cut(s) 880, 1108
TaqI TCGA 4 cut(s) 255, 675, 961, 1043
TasI AATT 5 cut(s) 87, 507, 749, 871, 928
TatI WGTACW 1 cut(s) 1154
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 14, 434
Tru1I TTAA 4 cut(s) 183, 332, 603, 752
Tru9I TTAA 4 cut(s) 183, 332, 603, 752
TscAI CASTG 4 cut(s) 207, 627, 1105, 1113
TseFI GTSAC 3 cut(s) 106, 526, 1046
TseI GCWGC 3 cut(s) 912, 1014, 1172
Tsp45I GTSAC 3 cut(s) 106, 526, 1046
TspDTI ATGAA 5 cut(s) 156, 204, 576, 624, 962
TspRI CASTG 4 cut(s) 207, 627, 1105, 1113
XapI RAATTY 2 cut(s) 871, 928
XspI CTAG 2 cut(s) 773, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.