Rroxscaffold_3G00225170

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000316
Physical Location & Seq
Forward (+)
8369079 .. 8374189
5111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225170.1

Sequence Viewer

Length: 1365 bp
ATGCATGTGGATTGTAAGGAGGTTGAGGAACTGAGATACAAGCTTGCAAATGTTTCATCTACTAGTGGTGTGGAGAACAGTGCTCAGAAACTCAGAGAAAACTACCTGCAGAAGTTGACTTTCCTCGAAGATCAGGTTACGGTGTTGACGAGGAAGCTAGATGCTCAATCTCAACTCTCAACCCAAAGAAGAAGAGGGGACGAGTCAGCAAAGCCGTTCCAGTTTGAGATTCAGAGATTGAAGGCTCAGAAGGTTCAAATGCAATGTAAGATGAAACTAGAATCTGTGCAGTTCAGATTGCATAAAGCTTTGTTGGACAAGGAAGTTCTTCAGCTCAAGAAAGAGAGTAGGAAGAATAAACATGAGATGCACAAGCTATTGGCCTCCAATCAAAGACTGACGACTGTTTTGCGTCGAAAGACTGAAGAAGCATCTGTGGCTACTAAACAGCTGAGACGGCTCTTAGAATCTCGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAATTCAGTCTGCTGAACATTTCTTGCTAATTAAGAAATGCATGTCTCATTTTGGAATGTCTAGGATGTCTGTGAAGATGGTGGAGGAGGCTGAAAAGCTTAAAGATGAAGTCGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGCTTTGAGAAGGATTTAGATATAACAGACCTGAAGGCTCAAGTAGTCAGCCTCAGTAGTATGGTTGAACCATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCACAGGACGTTAGGAGTCAGCATACTGCATCTGTTGGGAGCAGTTACAAGTTAGTGGAGGACATTAGTCCATCTGCATCAGAAAATTCCGCAGTTGGAACATCTAAAACGGCAGCTCCAGTTTGCTGCTCAAGCACTAAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGCGTCCAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACTATCAGAGATTGCTAATGGCGTTTTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGATTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTTCAGAAGCCTGCTGAACCGGAAGGGAACTTTGGAGCAATAAAGAAACCATTAACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAAGCTGGCCCAAGAAAAAAGGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAGACCCAATTTCCTCAGTGCCAGTAAATATGGAAGGAAATGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

50.01

Weight (kDa)

9.4

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 6 - 115 2.1e-22 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 992
AccI GTMKAC 1 cut(s) 1317
AciI CCGC 1 cut(s) 885
AclWI GGATC 1 cut(s) 966
AcsI RAATTY 2 cut(s) 880, 937
AcuI CTGAAG 5 cut(s) 314, 444, 740, 1142, 1161
AfaI GTAC 1 cut(s) 1252
AgsI TTSAA 5 cut(s) 241, 257, 755, 1093, 1101
AhlI ACTAGT 2 cut(s) 62, 1168
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 1185, 1217
Alw21I GWGCWC 3 cut(s) 85, 665, 1168
Alw26I GTCTC 2 cut(s) 448, 570
Alw44I GTGCAC 1 cut(s) 1164
AlwI GGATC 1 cut(s) 966
AoxI GGCC 2 cut(s) 381, 1270
ApaLI GTGCAC 1 cut(s) 1164
ApeKI GCWGC 5 cut(s) 908, 921, 1010, 1023, 1259
ApoI RAATTY 2 cut(s) 880, 937
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 1271
AsuHPI GGTGA 1 cut(s) 1258
BaeGI GKGCMC 1 cut(s) 1168
BanI GGYRCC 1 cut(s) 992
Bbv12I GWGCWC 3 cut(s) 85, 665, 1168
BbvI GCAGC 5 cut(s) 908, 920, 1022, 1035, 1246
BccI CCATC 2 cut(s) 592, 874
BceAI ACGGC 3 cut(s) 199, 473, 921
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 1 cut(s) 671
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 2 cut(s) 448, 570
BcuI ACTAGT 2 cut(s) 62, 1168
BfaI CTAG 5 cut(s) 63, 158, 278, 582, 1169
BfmI CTRYAG 2 cut(s) 107, 1314
BfuAI ACCTGC 1 cut(s) 114
BisI GCNGC 5 cut(s) 909, 922, 1011, 1024, 1260
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 5 cut(s) 910, 923, 1012, 1025, 1261
Bme1390I CCNGG 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 1271
BmiI GGNNCC 1 cut(s) 994
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 5 cut(s) 151, 357, 440, 833, 881
BoxI GACNNNNGTC 1 cut(s) 861
BpmI CTGGAG 1 cut(s) 897
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 3 cut(s) 320, 711, 910
BsaJI CCNNGG 1 cut(s) 975
BsaWI WCCGGW 1 cut(s) 1189
BsaXI ACNNNNNCTCC 2 cut(s) 895, 925
Bse1I ACTGG 4 cut(s) 220, 914, 1107, 1337
Bse3DI GCAATG 2 cut(s) 269, 1155
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 975
BseGI GGATG 1 cut(s) 591
BseMI GCAATG 2 cut(s) 269, 1155
BseMII CTCAG 8 cut(s) 23, 98, 106, 260, 443, 754, 768, 1344
BseNI ACTGG 4 cut(s) 220, 914, 1107, 1337
BseRI GAGGAG 1 cut(s) 620
BseSI GKGCMC 1 cut(s) 1168
BseXI GCAGC 5 cut(s) 908, 920, 1022, 1035, 1246
BsgI GTGCAG 3 cut(s) 308, 1029, 1042
BshFI GGCC 2 cut(s) 383, 1272
BshNI GGYRCC 1 cut(s) 992
BsiHKAI GWGCWC 3 cut(s) 85, 665, 1168
BsiSI CCGG 1 cut(s) 1190
BslFI GGGAC 2 cut(s) 212, 1025
BsmAI GTCTC 2 cut(s) 448, 570
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 2 cut(s) 212, 1025
BsnI GGCC 2 cut(s) 383, 1272
Bsp1286I GDGCHC 3 cut(s) 85, 665, 1168
Bsp143I GATC 3 cut(s) 130, 784, 971
Bsp1720I GCTNAGC 1 cut(s) 777
BspACI CCGC 1 cut(s) 885
BspANI GGCC 2 cut(s) 383, 1272
BspCNI CTCAG 8 cut(s) 24, 97, 105, 259, 444, 753, 769, 1343
BspLI GGNNCC 1 cut(s) 994
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 114
BspPI GGATC 1 cut(s) 966
BspT107I GGYRCC 1 cut(s) 992
BsrDI GCAATG 2 cut(s) 269, 1155
BsrI ACTGG 4 cut(s) 220, 914, 1107, 1337
BssECI CCNNGG 1 cut(s) 975
BssMI GATC 3 cut(s) 130, 784, 971
BssT1I CCWWGG 1 cut(s) 975
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 5 cut(s) 80, 142, 406, 1117, 1315
Bst6I CTCTTC 2 cut(s) 187, 1115
BstC8I GCNNGC 4 cut(s) 45, 1182, 1270, 1296
BstF5I GGATG 1 cut(s) 591
BstKTI GATC 3 cut(s) 133, 787, 974
BstMAI GTCTC 2 cut(s) 448, 570
BstMBI GATC 3 cut(s) 130, 784, 971
BstMWI GCNNNNNNNGC 4 cut(s) 437, 457, 927, 1265
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 2 cut(s) 8, 565
BstPAI GACNNNNGTC 1 cut(s) 861
BstSCI CCNGG 1 cut(s) 669
BstSFI CTRYAG 2 cut(s) 107, 1314
BstSLI GKGCMC 1 cut(s) 1168
BstV1I GCAGC 5 cut(s) 908, 920, 1022, 1035, 1246
BsuRI GGCC 2 cut(s) 383, 1272
BtsCI GGATG 1 cut(s) 591
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 5 cut(s) 85, 638, 1114, 1122, 1338
BveI ACCTGC 1 cut(s) 114
Cac8I GCNNGC 4 cut(s) 45, 1182, 1270, 1296
Cfr13I GGNCC 1 cut(s) 1271
CseI GACGC 2 cut(s) 401, 1002
Csp6I GTAC 1 cut(s) 1251
CviAII CATG 6 cut(s) 5, 362, 562, 666, 788, 999
CviQI GTAC 1 cut(s) 1251
DpnI GATC 3 cut(s) 132, 786, 973
DpnII GATC 3 cut(s) 130, 784, 971
Eam1104I CTCTTC 2 cut(s) 187, 1115
EarI CTCTTC 2 cut(s) 187, 1115
Eco130I CCWWGG 1 cut(s) 975
Eco57I CTGAAG 5 cut(s) 314, 444, 740, 1142, 1161
EcoRI GAATTC 1 cut(s) 937
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 975
EcoT22I ATGCAT 2 cut(s) 6, 563
ErhI CCWWGG 1 cut(s) 975
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 6 cut(s) 8, 365, 565, 669, 791, 1002
FaqI GGGAC 2 cut(s) 212, 1025
FatI CATG 6 cut(s) 4, 361, 561, 665, 787, 998
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 1 cut(s) 1317
Fnu4HI GCNGC 5 cut(s) 909, 922, 1011, 1024, 1260
FokI GGATG 1 cut(s) 598
Fsp4HI GCNGC 5 cut(s) 909, 922, 1011, 1024, 1260
FspBI CTAG 5 cut(s) 63, 158, 278, 582, 1169
GluI GCNGC 5 cut(s) 909, 922, 1011, 1024, 1260
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 2 cut(s) 383, 1272
HapII CCGG 1 cut(s) 1190
HgaI GACGC 2 cut(s) 401, 1002
Hin1II CATG 6 cut(s) 8, 365, 565, 669, 791, 1002
HincII GTYRAC 3 cut(s) 117, 147, 685
HindII GTYRAC 3 cut(s) 117, 147, 685
HindIII AAGCTT 3 cut(s) 41, 306, 617
HinfI GANTC 8 cut(s) 203, 229, 281, 467, 811, 1058, 1136, 1300
HpaII CCGG 1 cut(s) 1190
HphI GGTGA 1 cut(s) 1258
Hpy166II GTNNAC 5 cut(s) 117, 147, 685, 1166, 1318
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 5 cut(s) 117, 147, 685, 1166, 1318
Hpy99I CGWCG 1 cut(s) 417
HpyAV CCTTC 7 cut(s) 235, 244, 691, 715, 1136, 1187, 1343
HpyCH4III ACNGT 5 cut(s) 80, 142, 406, 1117, 1315
HpyCH4IV ACGT 1 cut(s) 804
HpyF10VI GCNNNNNNNGC 4 cut(s) 437, 457, 927, 1265
HpySE526I ACGT 1 cut(s) 804
Hsp92II CATG 6 cut(s) 8, 365, 565, 669, 791, 1002
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 3 cut(s) 130, 784, 971
LmnI GCTCC 3 cut(s) 834, 916, 1205
Lsp1109I GCAGC 5 cut(s) 908, 920, 1022, 1035, 1246
LweI GCATC 5 cut(s) 151, 357, 440, 833, 881
MaeI CTAG 5 cut(s) 63, 158, 278, 582, 1169
MaeII ACGT 1 cut(s) 804
MaeIII GTNAC 5 cut(s) 136, 795, 839, 1055, 1309
MalI GATC 3 cut(s) 132, 786, 973
MboI GATC 3 cut(s) 130, 784, 971
MboII GAAGA 8 cut(s) 140, 201, 204, 320, 364, 437, 607, 1132
MhlI GDGCHC 3 cut(s) 85, 665, 1168
MluCI AATT 6 cut(s) 522, 549, 880, 937, 1230, 1323
MlyI GAGTC 3 cut(s) 212, 820, 1052
MmeI TCCRAC 2 cut(s) 294, 871
Mph1103I ATGCAT 2 cut(s) 6, 563
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 4 cut(s) 552, 621, 761, 1223
MslI CAYNNNNRTG 1 cut(s) 1244
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 1 cut(s) 1190
MspR9I CCNGG 1 cut(s) 671
MvaI CCWGG 1 cut(s) 671
MwoI GCNNNNNNNGC 4 cut(s) 437, 457, 927, 1265
NdeII GATC 3 cut(s) 130, 784, 971
NlaIII CATG 6 cut(s) 8, 365, 565, 669, 791, 1002
NlaIV GGNNCC 1 cut(s) 994
NmuCI GTSAC 2 cut(s) 795, 1055
NsiI ATGCAT 2 cut(s) 6, 563
NspI RCATGY 2 cut(s) 8, 565
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 5 cut(s) 229, 281, 467, 1136, 1300
PkrI GCNGC 5 cut(s) 910, 923, 1012, 1025, 1261
PleI GAGTC 3 cut(s) 211, 819, 1052
PpsI GAGTC 3 cut(s) 211, 819, 1052
PshAI GACNNNNGTC 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 994
PspPI GGNCC 1 cut(s) 1271
PstI CTGCAG 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 451
RsaI GTAC 1 cut(s) 1252
RsaNI GTAC 1 cut(s) 1251
RseI CAYNNNNRTG 1 cut(s) 1244
SaqAI TTAA 4 cut(s) 552, 621, 761, 1223
SatI GCNGC 5 cut(s) 909, 922, 1011, 1024, 1260
Sau3AI GATC 3 cut(s) 130, 784, 971
Sau96I GGNCC 1 cut(s) 1271
SchI GAGTC 3 cut(s) 212, 820, 1052
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 3 cut(s) 85, 665, 1168
SfaNI GCATC 5 cut(s) 151, 357, 440, 833, 881
SfcI CTRYAG 2 cut(s) 107, 1314
SmiMI CAYNNNNRTG 1 cut(s) 1244
SmlI CTYRAG 3 cut(s) 335, 726, 925
SmoI CTYRAG 3 cut(s) 335, 726, 925
SpeI ACTAGT 2 cut(s) 62, 1168
Sse9I AATT 6 cut(s) 522, 549, 880, 937, 1230, 1323
SsiI CCGC 1 cut(s) 885
SspMI CTAG 5 cut(s) 63, 158, 278, 582, 1169
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 5 cut(s) 80, 142, 406, 1117, 1315
TaiI ACGT 1 cut(s) 807
TaqI TCGA 5 cut(s) 126, 415, 633, 970, 1052
TasI AATT 6 cut(s) 522, 549, 880, 937, 1230, 1323
TatI WGTACW 1 cut(s) 1250
TfiI GAWTC 5 cut(s) 229, 281, 467, 1136, 1300
Tru1I TTAA 4 cut(s) 552, 621, 761, 1223
Tru9I TTAA 4 cut(s) 552, 621, 761, 1223
TscAI CASTG 5 cut(s) 85, 645, 1114, 1122, 1338
TseFI GTSAC 2 cut(s) 795, 1055
TseI GCWGC 5 cut(s) 908, 921, 1010, 1023, 1259
Tsp45I GTSAC 2 cut(s) 795, 1055
TspDTI ATGAA 4 cut(s) 45, 287, 642, 971
TspRI CASTG 5 cut(s) 85, 645, 1114, 1122, 1338
VneI GTGCAC 1 cut(s) 1164
XapI RAATTY 2 cut(s) 880, 937
XceI RCATGY 2 cut(s) 8, 565
XmiI GTMKAC 1 cut(s) 1317
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 5 cut(s) 63, 158, 278, 582, 1169
Zsp2I ATGCAT 2 cut(s) 6, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.