MD15G1440800.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000316
Physical Location & Seq
Forward (+)
54058966 .. 54061767
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1440800.v1.1.491

Sequence Viewer

Length: 1023 bp
ATGTTTCTCACTACTCTCTGTTGGATTGCTAGAGAGCTGTCTCTGTTGCAAAAGCGCATTGACCAGGCAAATGAAAAAGGATGGAGGAGAGAATATCCTTTCATTGATGTTATTAACAACATAACAAAAAAGTTGCTGCTTCTTGAGAAACCATCAGAACAATTCCGATTAATAAATGAGGTTCCAGAAGTAATTGCAGATGTAGAAAAACTTGAACCTACTCCTGAGAACTCTCTAAGCCAGGATCAAACAGAACATGATGGATCACCTGAATCAGCCCCCAGAGCCAGATGGTCTTCTCAAACTCCCAGAACTGGTCTAGCCAACAGAACTGTCTACTACGAAAAGGGCGGAACAGATCCATCAGGTACAGAAAAATTTAAACCTACTCCTGAGAGCTCTCCAAGGAAGGACAAACAAGAATGTGATGGCTTTCCTGATTCAGCCTTCAAAGGGTCCTGTCCAACTCCAAACACTAATTTAGCCAGTGGAACTTTGTGTCTTCCAAATGGAGGAACTGATCCGGCAGAAGTTCGAGGTGGCATTCGTCAAAAGGAGCACCAATTCGTTCAAGTGAAGAACAAGTCTCATAAAGTCTTGTTCTCTGAAGAGTTTATAAAAAAACCTCTTGATTTTGCTTCCCAAGGTAAACCTGATATCGACCTGCAAGAGCCGCACCATTTTAGTTCCGGTGTCGATATTAAAAGGCAAAGTGAAGAATGTGTTGAGCAAAAATTGAAAAATGAAAGCACATCCAAAGCTGAGTTAATTGAGCTAAGCGATGATGATGAAGATGTACATGATGAAGTTAAAGCACCTGCATCTGAAGACCCAGATTCTGCACTATGGCATTGTATGAGTCCTCTTGGTGAAACAAGAGGCCCCTATAAAATGTCATTGTTAAGGCAGTGGAACAATTCAAGTTGCCGTCCATTGAAATTCAAGGTTTGGAAGGAGGGTCAAAGCGAGGAAGAGGCAGTGTTTCTTGATGATGCCGTTCGTCAAAGTCTTCCCAATACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GYF Plus-3 SWIB

Protein Analysis

341

Amino Acids

38.4

Weight (kDa)

5.19

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NERD_plant PF25980 8 - 57 7.8e-17 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AarI CACCTGC 1 cut(s) 826
Acc36I ACCTGC 2 cut(s) 672, 826
AccI GTMKAC 1 cut(s) 336
AciI CCGC 2 cut(s) 351, 674
AclWI GGATC 4 cut(s) 252, 271, 353, 515
AcsI RAATTY 2 cut(s) 377, 938
AcuI CTGAAG 2 cut(s) 627, 846
AfaI GTAC 2 cut(s) 370, 798
AfiI CCNNNNNNNGG 3 cut(s) 314, 453, 512
AgsI TTSAA 7 cut(s) 215, 451, 572, 739, 921, 937, 943
AjnI CCWGG 2 cut(s) 63, 240
AluBI AGCT 4 cut(s) 37, 399, 761, 775
AluI AGCT 4 cut(s) 37, 399, 761, 775
Alw21I GWGCWC 2 cut(s) 401, 561
Alw26I GTCTC 2 cut(s) 45, 591
AlwI GGATC 4 cut(s) 252, 271, 353, 515
AlwNI CAGNNNCTG 1 cut(s) 839
AoxI GGCC 1 cut(s) 880
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 2 cut(s) 377, 938
AseI ATTAAT 1 cut(s) 170
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 456, 881
AsuHPI GGTGA 2 cut(s) 258, 881
AvaII GGWCC 1 cut(s) 456
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 4 cut(s) 288, 494, 834, 1001
Bbv12I GWGCWC 2 cut(s) 401, 561
BbvI GCAGC 1 cut(s) 123
BccI CCATC 6 cut(s) 75, 160, 254, 285, 370, 422
BceAI ACGGC 2 cut(s) 912, 980
BciT130I CCWGG 2 cut(s) 65, 242
BcoDI GTCTC 2 cut(s) 45, 591
BfaI CTAG 2 cut(s) 30, 320
BfuAI ACCTGC 2 cut(s) 672, 826
BisI GCNGC 2 cut(s) 137, 674
BlpI GCTNAGC 1 cut(s) 776
BlsI GCNGC 2 cut(s) 138, 675
Bme1390I CCNGG 2 cut(s) 65, 242
Bme18I GGWCC 1 cut(s) 456
BmgT120I GGNCC 2 cut(s) 456, 881
BmiI GGNNCC 3 cut(s) 183, 457, 883
BmrFI CCNGG 2 cut(s) 65, 242
BmsI GCATC 2 cut(s) 830, 982
BpiI GAAGAC 4 cut(s) 288, 494, 834, 1001
Bpu1102I GCTNAGC 1 cut(s) 776
BpuEI CTTGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 1020
BsaJI CCNNGG 2 cut(s) 404, 643
BsaWI WCCGGW 1 cut(s) 689
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 453, 512
Bse1I ACTGG 2 cut(s) 319, 486
BseBI CCWGG 2 cut(s) 65, 242
BseDI CCNNGG 2 cut(s) 404, 643
BseGI GGATG 2 cut(s) 86, 752
BseLI CCNNNNNNNGG 3 cut(s) 314, 453, 512
BseMII CTCAG 3 cut(s) 216, 384, 753
BseNI ACTGG 2 cut(s) 319, 486
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 1 cut(s) 882
BsiHKAI GWGCWC 2 cut(s) 401, 561
BsiSI CCGG 2 cut(s) 524, 690
BslI CCNNNNNNNGG 3 cut(s) 314, 453, 512
BsmAI GTCTC 2 cut(s) 45, 591
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 1 cut(s) 882
Bsp1286I GDGCHC 2 cut(s) 401, 561
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 4 cut(s) 244, 263, 358, 520
Bsp1720I GCTNAGC 1 cut(s) 776
BspACI CCGC 2 cut(s) 351, 674
BspANI GGCC 1 cut(s) 882
BspCNI CTCAG 3 cut(s) 217, 385, 754
BspLI GGNNCC 3 cut(s) 183, 457, 883
BspMI ACCTGC 2 cut(s) 672, 826
BspPI GGATC 4 cut(s) 252, 271, 353, 515
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 2 cut(s) 319, 486
BssECI CCNNGG 2 cut(s) 404, 643
BssMI GATC 4 cut(s) 244, 263, 358, 520
BssT1I CCWWGG 2 cut(s) 404, 643
Bst2UI CCWGG 2 cut(s) 65, 242
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 603, 966
BstAUI TGTACA 1 cut(s) 796
BstBAI YACGTR 1 cut(s) 1020
BstDEI CTNAG 5 cut(s) 225, 236, 393, 762, 776
BstF5I GGATG 2 cut(s) 86, 752
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 4 cut(s) 247, 266, 361, 523
BstMAI GTCTC 2 cut(s) 45, 591
BstMBI GATC 4 cut(s) 244, 263, 358, 520
BstMWI GCNNNNNNNGC 2 cut(s) 284, 673
BstNI CCWGG 2 cut(s) 65, 242
BstSCI CCNGG 2 cut(s) 63, 240
BstSNI TACGTA 1 cut(s) 1020
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 4 cut(s) 288, 494, 834, 1001
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 882
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 2 cut(s) 86, 752
BtsI GCAGTG 2 cut(s) 914, 984
BtsIMutI CAGTG 3 cut(s) 493, 914, 984
BveI ACCTGC 2 cut(s) 672, 826
CaiI CAGNNNCTG 1 cut(s) 839
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 456, 881
Csp6I GTAC 2 cut(s) 369, 797
CviAII CATG 2 cut(s) 257, 800
CviQI GTAC 2 cut(s) 369, 797
DdeI CTNAG 5 cut(s) 225, 236, 393, 762, 776
DpnI GATC 4 cut(s) 246, 265, 360, 522
DpnII GATC 4 cut(s) 244, 263, 358, 520
DraI TTTAAA 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 603, 966
EarI CTCTTC 2 cut(s) 603, 966
EciI GGCGGA 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 399
Eco105I TACGTA 1 cut(s) 1020
Eco130I CCWWGG 2 cut(s) 404, 643
Eco24I GRGCYC 1 cut(s) 401
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 399
Eco57I CTGAAG 2 cut(s) 627, 846
EcoICRI GAGCTC 1 cut(s) 399
EcoO109I RGGNCCY 2 cut(s) 456, 881
EcoRII CCWGG 2 cut(s) 63, 240
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 404, 643
EcoT38I GRGCYC 1 cut(s) 401
ErhI CCWWGG 2 cut(s) 404, 643
FaeI CATG 2 cut(s) 260, 803
FaiI YATR 8 cut(s) 122, 258, 591, 617, 801, 847, 857, 888
FatI CATG 2 cut(s) 256, 799
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 137, 674
FokI GGATG 2 cut(s) 93, 739
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 2 cut(s) 137, 674
FspBI CTAG 2 cut(s) 30, 320
GlaI GCGC 1 cut(s) 56
GluI GCNGC 2 cut(s) 137, 674
HaeIII GGCC 1 cut(s) 882
HapII CCGG 2 cut(s) 524, 690
HhaI GCGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 260, 803
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 4 cut(s) 272, 440, 836, 859
HpaII CCGG 2 cut(s) 524, 690
HphI GGTGA 2 cut(s) 258, 881
Hpy166II GTNNAC 2 cut(s) 337, 650
Hpy188I TCNGA 4 cut(s) 157, 167, 607, 826
Hpy188III TCNNGA 7 cut(s) 143, 185, 224, 392, 437, 629, 986
Hpy8I GTNNAC 2 cut(s) 337, 650
HpyAV CCTTC 3 cut(s) 403, 457, 946
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 1019
HpyCH4V TGCA 5 cut(s) 49, 197, 667, 821, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 673
HpyF3I CTNAG 5 cut(s) 225, 236, 393, 762, 776
HpySE526I ACGT 1 cut(s) 1019
Hsp92II CATG 2 cut(s) 260, 803
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 244, 263, 358, 520
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 2 cut(s) 830, 982
MaeI CTAG 2 cut(s) 30, 320
MaeII ACGT 1 cut(s) 1019
MalI GATC 4 cut(s) 246, 265, 360, 522
MboI GATC 4 cut(s) 244, 263, 358, 520
MboII GAAGA 9 cut(s) 288, 494, 589, 620, 728, 803, 839, 983, 1001
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 401, 561
MluCI AATT 9 cut(s) 161, 192, 377, 478, 563, 734, 768, 916, 938
MlyI GAGTC 1 cut(s) 868
MmeI TCCRAC 1 cut(s) 488
MseI TTAA 7 cut(s) 114, 170, 381, 702, 767, 810, 902
MspI CCGG 2 cut(s) 524, 690
MspR9I CCNGG 2 cut(s) 65, 242
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 2 cut(s) 65, 242
MwoI GCNNNNNNNGC 2 cut(s) 284, 673
NdeII GATC 4 cut(s) 244, 263, 358, 520
NlaIII CATG 2 cut(s) 260, 803
NlaIV GGNNCC 3 cut(s) 183, 457, 883
PaqCI CACCTGC 1 cut(s) 826
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 272, 440, 836
PkrI GCNGC 2 cut(s) 138, 675
PleI GAGTC 1 cut(s) 867
PpsI GAGTC 1 cut(s) 867
Ppu21I YACGTR 1 cut(s) 1020
PpuMI RGGWCCY 1 cut(s) 456
PshBI ATTAAT 1 cut(s) 170
PsiI TTATAA 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 456
Psp6I CCWGG 2 cut(s) 63, 240
PspGI CCWGG 2 cut(s) 63, 240
PspN4I GGNNCC 3 cut(s) 183, 457, 883
PspPI GGNCC 2 cut(s) 456, 881
PspPPI RGGWCCY 1 cut(s) 456
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 370, 798
RsaNI GTAC 2 cut(s) 369, 797
SacI GAGCTC 1 cut(s) 401
SaqAI TTAA 7 cut(s) 114, 170, 381, 702, 767, 810, 902
SatI GCNGC 2 cut(s) 137, 674
Sau3AI GATC 4 cut(s) 244, 263, 358, 520
Sau96I GGNCC 2 cut(s) 456, 881
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 2 cut(s) 65, 242
SduI GDGCHC 2 cut(s) 401, 561
SfaNI GCATC 2 cut(s) 830, 982
SinI GGWCC 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SnaBI TACGTA 1 cut(s) 1020
Sse9I AATT 9 cut(s) 161, 192, 377, 478, 563, 734, 768, 916, 938
SsiI CCGC 2 cut(s) 351, 674
SspMI CTAG 2 cut(s) 30, 320
SstI GAGCTC 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 63, 240
StyI CCWWGG 2 cut(s) 404, 643
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 1022
TaqI TCGA 3 cut(s) 535, 660, 696
TasI AATT 9 cut(s) 161, 192, 377, 478, 563, 734, 768, 916, 938
TatI WGTACW 1 cut(s) 796
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 3 cut(s) 272, 440, 836
Tru1I TTAA 7 cut(s) 114, 170, 381, 702, 767, 810, 902
Tru9I TTAA 7 cut(s) 114, 170, 381, 702, 767, 810, 902
TscAI CASTG 3 cut(s) 493, 914, 984
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 5 cut(s) 87, 91, 759, 804, 819
TspRI CASTG 3 cut(s) 493, 914, 984
VpaK11BI GGWCC 1 cut(s) 456
VspI ATTAAT 1 cut(s) 170
XapI RAATTY 2 cut(s) 377, 938
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 2 cut(s) 30, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.