Rh7CG391400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000316
Physical Location & Seq
Reverse (-)
49605356 .. 49614755
9400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG391400.1

Sequence Viewer

Length: 1260 bp
ATGGAGGAGAGCCAACATGGCCTAGTGTACTGTGGAAATCACCCCGTAACCGAAGCGACAATCACAACGTTTAGGGAGAAAATAGACTTCAAGGATCGTGATACTTTTGAGTGCCTGTTTAAAGAGTGCTGGGAAATCCTAAAGGAACAAGAAGGTTTCACTTTGGATGATGTCTATTCCGCATGTGCCACATTAAAGGCAAAAAATCATAATTGCAGATTTGATTCAGTAAATATTGGTGATAGTGACGAAAGTAGAGACCTGACAACATCAGATGGCAACACTAGTGCTATAGAGTTTCAGAAGACAGTAGGAAAAAAGAAGAGATTTCAGCCAATGGAATTTATAGGATGGGGTTCCAAACCTCTCATTGAGTTCCTAAGATCCATTGGCAAGGATACAACCAAGAAGTTATCCCGGTTTGAAGTGGAGTCTATCATCTCTTATTACATCAAGGATAATGACCTCCCAAAACAGAAGAAAATGGCTCAATGTGATAATAGTCTGTATTCTATCTTCAAACAGAAATCCATCAATATGGCAAAATTATATCAACTTCTGGAGGAACATTTTGCAGAAGACATTATGGTAATAGAGGATAGTGGAAGTCAGGATGAAGATATAATCAGATTGGAAGATAAGAACAAAGGTACAAAGAGCAAGAAGAGAAGAGTGAGCTCAGATGTAATAATAACTGATGAAAACAAAGCTCCTAGTATCCATAAAAGCTGTTTTGCATCTATTATTGCTGAGAATATGAAGTTTGTTTACATAAGAAGGAGCTTACTAGAAGAGTTATTGAAGGAGCCTGATCATTCAGAAAGCAAGATACTAGGGAGTTTCGTGAGAGTGAAAAATGACCCTCAAGACTACCTTCAGAGAAATAGTCACCAGCTTTCACAAGTTAAAGGCATGAAGAAAATCACAGCAACTAATGACTTTGAAATTCTCCTGCAAGTTTCCCATTTTACAAGCGATATTCCCATTTCTTTGCTATCAGATTCTGACTTCACTCAGGAAGAATGTGAAGATTTGCGCCAACACATGGCTGAAGGCTTGCTAAAGAAACCTACAGTTGTTGCACTTCAAGAGAAGGCGAGAGTTCTGCATGAGGACATAACTAAGCATTGGATTCAGAAAGAGCTGGTGAGATTGCAAAATCGGGTTGATTACACAAACGAGAAAGGATTGAGAAGAGAATATCCTTCCATAGTCTTTATGCAAGTCTGCAGTAGTAAACGTTTGGTATCACTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

419

Amino Acids

48.47

Weight (kDa)

6.18

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 120 - 191 2.5e-10 SWIB/MDM2 domain
Plus-3 PF03126 253 - 349 2.2e-17 Plus-3 domain
NERD_plant PF25980 371 - 405 6.2e-13 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1045
AciI CCGC 1 cut(s) 180
AclI AACGTT 2 cut(s) 68, 1240
AclWI GGATC 2 cut(s) 102, 378
AcsI RAATTY 2 cut(s) 341, 945
AcuI CTGAAG 2 cut(s) 860, 1071
AfaI GTAC 2 cut(s) 29, 652
AfiI CCNNNNNNNGG 1 cut(s) 1045
AgsI TTSAA 6 cut(s) 91, 425, 520, 802, 944, 1088
AhlI ACTAGT 1 cut(s) 284
AluBI AGCT 6 cut(s) 678, 710, 729, 783, 895, 1144
AluI AGCT 6 cut(s) 678, 710, 729, 783, 895, 1144
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 102, 378
AlwNI CAGNNNCTG 1 cut(s) 1004
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 341, 945
AspLEI GCGC 1 cut(s) 1038
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 4 cut(s) 32, 251, 881, 1159
BanII GRGCYC 1 cut(s) 680
BarI GAAGNNNNNNTAC 4 cut(s) 500, 532, 752, 784
BbsI GAAGAC 2 cut(s) 311, 585
Bbv12I GWGCWC 1 cut(s) 680
BccI CCATC 3 cut(s) 269, 345, 539
BcgI CGANNNNNNTGC 2 cut(s) 1087, 1121
BciVI GTATCC 2 cut(s) 391, 728
BclI TGATCA 1 cut(s) 811
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 252
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 5 cut(s) 23, 285, 714, 788, 833
BfmI CTRYAG 3 cut(s) 291, 1071, 1228
BfuI GTATCC 2 cut(s) 391, 728
BglI GCCNNNNNGGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 358, 807
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 746
BpiI GAAGAC 2 cut(s) 311, 585
BpmI CTGGAG 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 849
BpuMI CCSGG 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 1045
BseGI GGATG 3 cut(s) 172, 356, 619
BseLI CCNNNNNNNGG 1 cut(s) 1045
BseMII CTCAG 3 cut(s) 693, 741, 1028
BseRI GAGGAG 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 1045
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 3 cut(s) 94, 383, 811
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 3 cut(s) 692, 742, 1027
BspLI GGNNCC 2 cut(s) 358, 807
BspMAI CTGCAG 1 cut(s) 1232
BspPI GGATC 2 cut(s) 102, 378
BspTNI GGTCTC 1 cut(s) 252
BssMI GATC 3 cut(s) 94, 383, 811
Bst4CI ACNGT 3 cut(s) 32, 310, 1075
Bst6I CTCTTC 5 cut(s) 317, 659, 664, 786, 1189
BstC8I GCNNGC 1 cut(s) 1058
BstDEI CTNAG 5 cut(s) 380, 679, 750, 1014, 1122
BstF5I GGATG 3 cut(s) 172, 356, 619
BstHHI GCGC 1 cut(s) 1038
BstKTI GATC 3 cut(s) 97, 386, 814
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 3 cut(s) 94, 383, 811
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 416
BstSFI CTRYAG 3 cut(s) 291, 1071, 1228
BstV2I GAAGAC 2 cut(s) 311, 585
BstX2I RGATCY 1 cut(s) 383
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 1 cut(s) 383
BsuI GTATCC 2 cut(s) 391, 728
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 3 cut(s) 172, 356, 619
Cac8I GCNNGC 1 cut(s) 1058
CaiI CAGNNNCTG 1 cut(s) 1004
CfoI GCGC 1 cut(s) 1038
Csp6I GTAC 2 cut(s) 28, 651
CviAII CATG 5 cut(s) 17, 183, 913, 1045, 1109
CviQI GTAC 2 cut(s) 28, 651
DdeI CTNAG 5 cut(s) 380, 679, 750, 1014, 1122
DpnI GATC 3 cut(s) 96, 385, 813
DpnII GATC 3 cut(s) 94, 383, 811
DraI TTTAAA 1 cut(s) 121
Eam1104I CTCTTC 5 cut(s) 317, 659, 664, 786, 1189
EarI CTCTTC 5 cut(s) 317, 659, 664, 786, 1189
Ecl136II GAGCTC 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 678
Eco57I CTGAAG 2 cut(s) 860, 1071
EcoICRI GAGCTC 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 680
FaeI CATG 5 cut(s) 20, 186, 916, 1048, 1112
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FatI CATG 5 cut(s) 16, 182, 912, 1044, 1108
FbaI TGATCA 1 cut(s) 811
FokI GGATG 3 cut(s) 179, 363, 626
FriOI GRGCYC 1 cut(s) 680
FspBI CTAG 5 cut(s) 23, 285, 714, 788, 833
GlaI GCGC 1 cut(s) 1037
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 418
HhaI GCGC 1 cut(s) 1038
Hin1II CATG 5 cut(s) 20, 186, 916, 1048, 1112
Hin6I GCGC 1 cut(s) 1036
HinP1I GCGC 1 cut(s) 1036
HinfI GANTC 4 cut(s) 224, 431, 1001, 1132
HpaII CCGG 1 cut(s) 418
HphI GGTGA 4 cut(s) 32, 251, 881, 1159
Hpy166II GTNNAC 3 cut(s) 28, 769, 1238
Hpy188I TCNGA 9 cut(s) 274, 303, 629, 682, 820, 879, 1000, 1006, 1137
Hpy188III TCNNGA 7 cut(s) 98, 560, 611, 844, 866, 1016, 1088
Hpy8I GTNNAC 3 cut(s) 28, 769, 1238
HpyAV CCTTC 7 cut(s) 146, 771, 796, 884, 1046, 1087, 1215
HpyCH4III ACNGT 3 cut(s) 32, 310, 1075
HpyCH4IV ACGT 2 cut(s) 68, 1240
HpyCH4V TGCA 9 cut(s) 216, 575, 737, 955, 1082, 1108, 1156, 1222, 1230
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 5 cut(s) 380, 679, 750, 1014, 1122
HpySE526I ACGT 2 cut(s) 68, 1240
Hsp92II CATG 5 cut(s) 20, 186, 916, 1048, 1112
HspAI GCGC 1 cut(s) 1036
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 3 cut(s) 94, 383, 811
LmnI GCTCC 3 cut(s) 715, 780, 805
LweI GCATC 1 cut(s) 746
MaeI CTAG 5 cut(s) 23, 285, 714, 788, 833
MaeII ACGT 2 cut(s) 68, 1240
MaeIII GTNAC 3 cut(s) 46, 245, 887
MalI GATC 3 cut(s) 96, 385, 813
MboI GATC 3 cut(s) 94, 383, 811
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 4 cut(s) 211, 341, 545, 945
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 6 cut(s) 375, 476, 556, 589, 873, 1105
MseI TTAA 3 cut(s) 120, 194, 906
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 418
NdeII GATC 3 cut(s) 94, 383, 811
NlaIII CATG 5 cut(s) 20, 186, 916, 1048, 1112
NlaIV GGNNCC 2 cut(s) 358, 807
NmuCI GTSAC 2 cut(s) 245, 887
NspI RCATGY 1 cut(s) 186
PfeI GAWTC 3 cut(s) 224, 1001, 1132
PflMI CCANNNNNTGG 1 cut(s) 1045
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 680
Psp1406I AACGTT 2 cut(s) 68, 1240
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 358, 807
PstI CTGCAG 1 cut(s) 1232
PstNI CAGNNNCTG 1 cut(s) 1004
PsuI RGATCY 1 cut(s) 383
RsaI GTAC 2 cut(s) 29, 652
RsaNI GTAC 2 cut(s) 28, 651
RseI CAYNNNNRTG 1 cut(s) 536
SacI GAGCTC 1 cut(s) 680
SaqAI TTAA 3 cut(s) 120, 194, 906
Sau3AI GATC 3 cut(s) 94, 383, 811
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 1 cut(s) 746
SfcI CTRYAG 3 cut(s) 291, 1071, 1228
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 864
SmoI CTYRAG 1 cut(s) 864
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 4 cut(s) 211, 341, 545, 945
SsiI CCGC 1 cut(s) 180
SspI AATATT 1 cut(s) 235
SspMI CTAG 5 cut(s) 23, 285, 714, 788, 833
SstI GAGCTC 1 cut(s) 680
StyD4I CCNGG 1 cut(s) 416
TaaI ACNGT 3 cut(s) 32, 310, 1075
TaiI ACGT 2 cut(s) 71, 1243
TasI AATT 4 cut(s) 211, 341, 545, 945
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 3 cut(s) 224, 1001, 1132
Tru1I TTAA 3 cut(s) 120, 194, 906
Tru9I TTAA 3 cut(s) 120, 194, 906
TseFI GTSAC 2 cut(s) 245, 887
Tsp45I GTSAC 2 cut(s) 245, 887
TspDTI ATGAA 4 cut(s) 630, 714, 773, 929
Van91I CCANNNNNTGG 1 cut(s) 1045
XapI RAATTY 2 cut(s) 341, 945
XceI RCATGY 1 cut(s) 186
XspI CTAG 5 cut(s) 23, 285, 714, 788, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.