Rw6G008580

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000316
Physical Location & Seq
Reverse (-)
14521633 .. 14522689
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008580.1

Sequence Viewer

Length: 603 bp
ATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTTGCAGGATGTTAGGAGTCAGTACACTGCATCTGTTGCGAGTAGTTACAAGTTAGTGGAGGACATCAGTCCATCTGCATCAGAAAATTCCACAGTTGTAACATCTAAAACTGCATCTCCAGTTTGCTGCTCATATAGTAAGAATTCTTTGTGCAAGGTGATGAAATACAAATGTCGATCCAAGGGTGGAAGCTGTGGTGACTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCAGTATCAGAGATTTCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTAAAGGTGCAATGCTACTTCAGAGTACACTAGTTCAGAAGGCTGCTGAACTAGCAGGGAACTTTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCACAAAAAAGGGAGATAGCCCGCGATTCAGCTTGTTACTGTAGACCCAATTTCCTCAATGCCAGTAAATATGGAAGCCTAAAGGAAGCAGAAGGAAATGACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.2

Weight (kDa)

9.07

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 538
AccII CGCG 1 cut(s) 519
AciI CCGC 1 cut(s) 517
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 133, 190
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 3 cut(s) 71, 418, 475
AgsI TTSAA 2 cut(s) 8, 354
AhlI ACTAGT 1 cut(s) 421
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 3 cut(s) 34, 240, 527
AluI AGCT 3 cut(s) 34, 240, 527
AlwI GGATC 1 cut(s) 219
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 4 cut(s) 174, 276, 434, 482
ApoI RAATTY 2 cut(s) 133, 190
AspS9I GGNCC 1 cut(s) 494
AsuHPI GGTGA 3 cut(s) 217, 257, 481
BbvI GCAGC 4 cut(s) 161, 288, 421, 469
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 37
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 2 cut(s) 422, 443
BfmI CTRYAG 1 cut(s) 535
BisI GCNGC 4 cut(s) 175, 277, 435, 483
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 4 cut(s) 176, 278, 436, 484
Bme1390I CCNGG 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 3 cut(s) 86, 134, 170
BoxI GACNNNNGTC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bse1I ACTGG 4 cut(s) 167, 317, 360, 558
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 4 cut(s) 167, 317, 360, 558
BseXI GCAGC 4 cut(s) 161, 288, 421, 469
BsgI GTGCAG 2 cut(s) 282, 295
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 1 cut(s) 495
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 495
Bsp143I GATC 2 cut(s) 37, 224
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 517
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 1 cut(s) 519
BspPI GGATC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 4 cut(s) 167, 317, 360, 558
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 37, 224
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 142, 370, 536
Bst6I CTCTTC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 30, 270
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 519
BstKTI GATC 2 cut(s) 40, 227
BstMBI GATC 2 cut(s) 37, 224
BstMWI GCNNNNNNNGC 2 cut(s) 83, 443
BstNI CCWGG 1 cut(s) 492
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 490
BstSFI CTRYAG 1 cut(s) 535
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 161, 288, 421, 469
BsuRI GGCC 1 cut(s) 495
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 3 cut(s) 72, 367, 375
Cac8I GCNNGC 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 494
Csp6I GTAC 3 cut(s) 70, 417, 474
CviAII CATG 2 cut(s) 41, 252
CviQI GTAC 3 cut(s) 70, 417, 474
DdeI CTNAG 2 cut(s) 30, 270
DpnI GATC 2 cut(s) 39, 226
DpnII GATC 2 cut(s) 37, 224
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 44, 255
FaiI YATR 7 cut(s) 42, 181, 183, 253, 383, 464, 567
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 40, 251
FauI CCCGC 1 cut(s) 524
FbaI TGATCA 1 cut(s) 37
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 4 cut(s) 175, 277, 435, 483
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 4 cut(s) 175, 277, 435, 483
FspBI CTAG 2 cut(s) 422, 443
GluI GCNGC 4 cut(s) 175, 277, 435, 483
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 495
Hin1II CATG 2 cut(s) 44, 255
HinfI GANTC 4 cut(s) 64, 248, 311, 521
HphI GGTGA 3 cut(s) 217, 257, 481
Hpy166II GTNNAC 3 cut(s) 72, 419, 539
Hpy188I TCNGA 5 cut(s) 130, 325, 345, 414, 429
Hpy8I GTNNAC 3 cut(s) 72, 419, 539
HpyAV CCTTC 2 cut(s) 424, 581
HpyCH4III ACNGT 3 cut(s) 142, 370, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 443
HpyF3I CTNAG 2 cut(s) 30, 270
Hsp92II CATG 2 cut(s) 44, 255
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 2 cut(s) 37, 224
LpnPI CCDG 8 cut(s) 38, 180, 330, 373, 432, 477, 504, 571
Lsp1109I GCAGC 4 cut(s) 161, 288, 421, 469
LweI GCATC 3 cut(s) 86, 134, 170
MaeI CTAG 2 cut(s) 422, 443
MaeIII GTNAC 5 cut(s) 92, 145, 245, 308, 530
MalI GATC 2 cut(s) 39, 226
MboI GATC 2 cut(s) 37, 224
MboII GAAGA 1 cut(s) 385
MluCI AATT 4 cut(s) 11, 133, 190, 544
MlyI GAGTC 3 cut(s) 73, 242, 305
MnlI CCTC 3 cut(s) 100, 379, 560
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 83, 443
NdeII GATC 2 cut(s) 37, 224
NlaIII CATG 2 cut(s) 44, 255
NmuCI GTSAC 2 cut(s) 245, 308
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 4 cut(s) 176, 278, 436, 484
PleI GAGTC 3 cut(s) 72, 242, 305
PpsI GAGTC 3 cut(s) 72, 242, 305
PshAI GACNNNNGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspPI GGNCC 1 cut(s) 494
RsaI GTAC 3 cut(s) 71, 418, 475
RsaNI GTAC 3 cut(s) 70, 417, 474
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 4 cut(s) 175, 277, 435, 483
Sau3AI GATC 2 cut(s) 37, 224
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 3 cut(s) 73, 242, 305
ScrFI CCNGG 1 cut(s) 492
SetI ASST 6 cut(s) 36, 207, 242, 400, 493, 529
SfaNI GCATC 3 cut(s) 86, 134, 170
SfcI CTRYAG 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 421
Sse9I AATT 4 cut(s) 11, 133, 190, 544
SsiI CCGC 1 cut(s) 517
SspMI CTAG 2 cut(s) 422, 443
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 142, 370, 536
TaqI TCGA 2 cut(s) 223, 305
TasI AATT 4 cut(s) 11, 133, 190, 544
TatI WGTACW 3 cut(s) 69, 416, 473
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 3 cut(s) 79, 367, 375
TseFI GTSAC 2 cut(s) 245, 308
TseI GCWGC 4 cut(s) 174, 276, 434, 482
Tsp45I GTSAC 2 cut(s) 245, 308
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 3 cut(s) 79, 367, 375
XapI RAATTY 2 cut(s) 133, 190
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 2 cut(s) 422, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.