RchiOBHm_Chr6g0258621

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000316
Physical Location & Seq
Reverse (-)
13977229 .. 13981059
3831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23188

Sequence Viewer

Length: 780 bp
ATGGCTGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGACGCACTGCAACAAGAAAAGTCAAGGTGCTCATTCCAGGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGACCTGTCTGACCTGAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCGCAGGTTAGACGTCAGGATACCGCATCTGTTGGGAGTAGTTACAAGTTAGTGGAGGCCATCTGTCCATCTGCATCAGAAAATTCCACAGTTGTCACATCTAAAACTGCATCTCCAGTTTGCTGCTCATATAGTGAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTTGCCACCATCAGAGATTTCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTTCTTCAGAGTACACTAGTTCAGAAGGCTGCTGAACAAGAAGGGAACTTTGGAGCAAGAAAGAAACCCTTGACTGAAATTGGGAACGTATTGGTGAGTACAAATGGCGCCCAAAAAATAGGGAGAAAGCCAGTGATTCAGCTCCTTACCGTAGACCCAATTTCCTCAGTGCCAGTAAATATGGAAGGCCTAAAGGAAGCAGAAGGAAATGACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

27.64

Weight (kDa)

5.89

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HOOK PF05622 2 - 49 6.7e-06 HOOK protein coiled-coil region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 2 cut(s) 401, 668
AccI GTMKAC 2 cut(s) 36, 714
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 2 cut(s) 289, 346
AcuI CTGAAG 3 cut(s) 152, 551, 570
AcyI GRCGYC 2 cut(s) 220, 669
AfaI GTAC 2 cut(s) 574, 661
AgsI TTSAA 2 cut(s) 167, 510
AhlI ACTAGT 1 cut(s) 577
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AluBI AGCT 5 cut(s) 22, 93, 193, 396, 703
AluI AGCT 5 cut(s) 22, 93, 193, 396, 703
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 375
AoxI GGCC 2 cut(s) 264, 748
ApeKI GCWGC 3 cut(s) 330, 432, 590
ApoI RAATTY 2 cut(s) 289, 346
AspLEI GCGC 1 cut(s) 671
AsuHPI GGTGA 1 cut(s) 667
BanI GGYRCC 2 cut(s) 401, 668
Bbv12I GWGCWC 1 cut(s) 68
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 3 cut(s) 317, 444, 577
BccI CCATC 3 cut(s) 275, 283, 484
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 196
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 1 cut(s) 578
BfoI RGCGCY 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 202
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 3 cut(s) 331, 433, 591
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 3 cut(s) 332, 434, 592
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 403, 670
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 3 cut(s) 242, 290, 326
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 220, 669
BsaJI CCNNGG 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bse1I ACTGG 4 cut(s) 323, 516, 692, 734
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 2 cut(s) 180, 741
BseNI ACTGG 4 cut(s) 323, 516, 692, 734
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 317, 444, 577
BsgI GTGCAG 2 cut(s) 438, 451
BshFI GGCC 2 cut(s) 266, 750
BshNI GGYRCC 2 cut(s) 401, 668
BsiHKAI GWGCWC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 2 cut(s) 266, 750
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 196, 380
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 1 cut(s) 231
BspANI GGCC 2 cut(s) 266, 750
BspCNI CTCAG 2 cut(s) 181, 740
BspLI GGNNCC 2 cut(s) 403, 670
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 375
BspT107I GGYRCC 2 cut(s) 401, 668
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 4 cut(s) 323, 516, 692, 734
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 2 cut(s) 196, 380
BssNI GRCGYC 2 cut(s) 220, 669
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 298, 526, 712
Bst6I CTCTTC 1 cut(s) 524
BstACI GRCGYC 2 cut(s) 220, 669
BstDEI CTNAG 4 cut(s) 6, 189, 426, 727
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 2 cut(s) 199, 383
BstMBI GATC 2 cut(s) 196, 380
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 317, 444, 577
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 266, 750
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 5 cut(s) 41, 523, 531, 699, 735
BveI ACCTGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 671
CseI GACGC 2 cut(s) 47, 139
Csp6I GTAC 2 cut(s) 573, 660
CviAII CATG 2 cut(s) 200, 408
CviQI GTAC 2 cut(s) 573, 660
DdeI CTNAG 4 cut(s) 6, 189, 426, 727
DinI GGCGCC 1 cut(s) 670
DpnI GATC 2 cut(s) 198, 382
DpnII GATC 2 cut(s) 196, 380
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 750
Eco57I CTGAAG 3 cut(s) 152, 551, 570
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 384
EgeI GGCGCC 1 cut(s) 670
EheI GGCGCC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 2 cut(s) 203, 411
FaiI YATR 8 cut(s) 113, 161, 201, 337, 339, 409, 539, 743
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 1 cut(s) 434
FatI CATG 2 cut(s) 199, 407
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 2 cut(s) 36, 714
Fnu4HI GCNGC 3 cut(s) 331, 433, 591
Fsp4HI GCNGC 3 cut(s) 331, 433, 591
FspBI CTAG 1 cut(s) 578
GlaI GCGC 1 cut(s) 670
GluI GCNGC 3 cut(s) 331, 433, 591
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 2 cut(s) 266, 750
HgaI GACGC 2 cut(s) 47, 139
HhaI GCGC 1 cut(s) 671
Hin1I GRCGYC 2 cut(s) 220, 669
Hin1II CATG 2 cut(s) 203, 411
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 697
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 4 cut(s) 37, 88, 575, 715
Hpy188I TCNGA 7 cut(s) 127, 286, 481, 501, 550, 570, 585
Hpy188III TCNNGA 2 cut(s) 97, 224
Hpy8I GTNNAC 4 cut(s) 37, 88, 575, 715
HpyAV CCTTC 7 cut(s) 94, 127, 545, 580, 596, 740, 758
HpyCH4III ACNGT 3 cut(s) 298, 526, 712
HpyCH4IV ACGT 2 cut(s) 220, 648
HpyCH4V TGCA 9 cut(s) 46, 181, 281, 317, 357, 372, 419, 432, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 6, 189, 426, 727
HpySE526I ACGT 2 cut(s) 220, 648
Hsp92I GRCGYC 2 cut(s) 220, 669
Hsp92II CATG 2 cut(s) 203, 411
HspAI GCGC 1 cut(s) 669
KasI GGCGCC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 196, 380
LmnI GCTCC 2 cut(s) 614, 708
Lsp1109I GCAGC 3 cut(s) 317, 444, 577
LweI GCATC 3 cut(s) 242, 290, 326
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 220, 648
MaeIII GTNAC 3 cut(s) 248, 301, 464
MalI GATC 2 cut(s) 198, 382
MboI GATC 2 cut(s) 196, 380
MboII GAAGA 2 cut(s) 541, 557
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 5 cut(s) 170, 289, 346, 639, 720
Mly113I GGCGCC 1 cut(s) 669
MnlI CCTC 6 cut(s) 4, 76, 256, 415, 535, 736
MseI TTAA 2 cut(s) 24, 173
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 11
NarI GGCGCC 1 cut(s) 669
NdeII GATC 2 cut(s) 196, 380
NlaIII CATG 2 cut(s) 203, 411
NlaIV GGNNCC 2 cut(s) 403, 670
NmuCI GTSAC 2 cut(s) 301, 464
PceI AGGCCT 1 cut(s) 750
PfeI GAWTC 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 3 cut(s) 332, 434, 592
PluTI GGCGCC 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 403, 670
RsaI GTAC 2 cut(s) 574, 661
RsaNI GTAC 2 cut(s) 573, 660
SaqAI TTAA 2 cut(s) 24, 173
SatI GCNGC 3 cut(s) 331, 433, 591
Sau3AI GATC 2 cut(s) 196, 380
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 3 cut(s) 242, 290, 326
SfoI GGCGCC 1 cut(s) 670
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 5 cut(s) 170, 289, 346, 639, 720
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 1 cut(s) 231
SspDI GGCGCC 1 cut(s) 668
SspMI CTAG 1 cut(s) 578
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 3 cut(s) 298, 526, 712
TaiI ACGT 2 cut(s) 223, 651
TaqI TCGA 3 cut(s) 96, 379, 461
TasI AATT 5 cut(s) 170, 289, 346, 639, 720
TatI WGTACW 2 cut(s) 572, 659
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 2 cut(s) 24, 173
Tru9I TTAA 2 cut(s) 24, 173
TscAI CASTG 5 cut(s) 48, 523, 531, 699, 735
TseFI GTSAC 2 cut(s) 301, 464
TseI GCWGC 3 cut(s) 330, 432, 590
Tsp45I GTSAC 2 cut(s) 301, 464
TspDTI ATGAA 2 cut(s) 45, 380
TspRI CASTG 5 cut(s) 48, 523, 531, 699, 735
XapI RAATTY 2 cut(s) 289, 346
XmiI GTMKAC 2 cut(s) 36, 714
XspI CTAG 1 cut(s) 578
ZraI GACGTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.