Rh6DG081800

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000316
Physical Location & Seq
Reverse (-)
9505570 .. 9509663
4094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG081800.1

Sequence Viewer

Length: 843 bp
ATGGACTCCGACGAACAGTACAATGTGGCCTTCGACGAAGACTTTCTTGGCTTTGGCAACGTTCGGTCAACTAGCACAGCGGCGAATTCTGATCTCGAGGGCTTGGCGACCGGCGCGTGGTCCAGGAACGACGACGAATCCGAAACAGTGAAACAGCGGAAGAGCGACATTGCCGAGATGTTGTGGGGATACGTGTCCCAACTGACGGTCGCGATTGAGGACGTGGACGCTGACGTGGCGGTCAGAGTCGAAGAGCTGGACGACATTACACGACATGTCGTTGTTTCTGGGCAAAAGCTTTCTCTATCAGGTTCAAATTCAAACGCAATGGAAGATGGAACTAGAATCTGGGCAAGCAACTTCTTCAGAAAGACTGAAGAAGCATCTGTGCCTACTAAACAGCTGAGGCGGCGCTTAGAATCTTGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTATGTGCTGTATATGAACGTCAAATAGAAGAGATGGCTAAGGAGGCTGAAAAGCTTAAAGATGAAGTAGACGCACTGCAACAAGAAAAGTCAAGGTGCTCATTCCAGGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGAACTGTCTGACCTGAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACCAGGCTGAGCTTGATCATGGGAAGTCGCAGGTTAGTGGAGTTGAATTTTGGCCATGCTTTGAACTAACTCATCTTCAATTGGAGCCTGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.54

Weight (kDa)

4.51

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 766
AccI GTMKAC 1 cut(s) 600
AccII CGCG 2 cut(s) 116, 212
AciI CCGC 4 cut(s) 80, 157, 239, 409
AclI AACGTT 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 797
AcsI RAATTY 3 cut(s) 85, 316, 791
AcuI CTGAAG 4 cut(s) 349, 396, 528, 716
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 117, 205
AflIII ACRYGT 2 cut(s) 192, 274
AgsI TTSAA 7 cut(s) 315, 321, 526, 731, 791, 809, 824
AjiI CACGTC 2 cut(s) 223, 235
AjnI CCWGG 3 cut(s) 122, 636, 747
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 8 cut(s) 256, 298, 403, 481, 532, 586, 657, 757
AluI AGCT 8 cut(s) 256, 298, 403, 481, 532, 586, 657, 757
Alw21I GWGCWC 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 2 cut(s) 27, 797
ApoI RAATTY 3 cut(s) 85, 316, 791
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 116, 414
AspS9I GGNCC 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 799
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 632
BbvCI CCTCAGC 1 cut(s) 404
BccI CCATC 2 cut(s) 329, 559
BciT130I CCWGG 3 cut(s) 124, 638, 749
BciVI GTATCC 1 cut(s) 182
BclI TGATCA 1 cut(s) 760
BfaI CTAG 2 cut(s) 72, 342
BfoI RGCGCY 1 cut(s) 415
BfuAI ACCTGC 1 cut(s) 766
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 2 cut(s) 81, 410
BlpI GCTNAGC 1 cut(s) 753
BlsI GCNGC 2 cut(s) 82, 411
Bme1390I CCNGG 3 cut(s) 124, 638, 749
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 95
BmgBI CACGTC 2 cut(s) 223, 235
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 3 cut(s) 124, 638, 749
BmsI GCATC 2 cut(s) 392, 474
BpiI GAAGAC 1 cut(s) 45
Bpu10I CCTNAGC 2 cut(s) 404, 570
Bpu1102I GCTNAGC 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 193
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 205
Bse118I RCCGGY 1 cut(s) 110
Bse3DI GCAATG 2 cut(s) 168, 333
BseBI CCWGG 3 cut(s) 124, 638, 749
BseLI CCNNNNNNNGG 2 cut(s) 117, 205
BseMI GCAATG 2 cut(s) 168, 333
BseMII CTCAG 3 cut(s) 395, 491, 744
Bsh1236I CGCG 2 cut(s) 116, 212
Bsh1285I CGRYCG 2 cut(s) 111, 210
BshFI GGCC 2 cut(s) 29, 799
BsiEI CGRYCG 2 cut(s) 111, 210
BsiHKAI GWGCWC 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 117, 205
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 2 cut(s) 29, 799
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 2 cut(s) 91, 760
Bsp1720I GCTNAGC 1 cut(s) 753
Bsp68I TCGCGA 1 cut(s) 212
BspACI CCGC 4 cut(s) 80, 157, 239, 409
BspANI GGCC 2 cut(s) 29, 799
BspCNI CTCAG 3 cut(s) 396, 490, 745
BspFNI CGCG 2 cut(s) 116, 212
BspLI GGNNCC 1 cut(s) 831
BspMI ACCTGC 1 cut(s) 766
BspQI GCTCTTC 2 cut(s) 155, 246
BsrDI GCAATG 2 cut(s) 168, 333
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 2 cut(s) 91, 760
Bst2UI CCWGG 3 cut(s) 124, 638, 749
Bst4CI ACNGT 4 cut(s) 18, 148, 208, 687
Bst6I CTCTTC 3 cut(s) 155, 246, 555
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 5 cut(s) 404, 415, 477, 570, 753
BstFNI CGCG 2 cut(s) 116, 212
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 2 cut(s) 116, 414
BstKTI GATC 2 cut(s) 94, 763
BstMBI GATC 2 cut(s) 91, 760
BstMCI CGRYCG 2 cut(s) 111, 210
BstMWI GCNNNNNNNGC 4 cut(s) 113, 236, 409, 575
BstNI CCWGG 3 cut(s) 124, 638, 749
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 122, 636, 747
BstUI CGCG 2 cut(s) 116, 212
BstV2I GAAGAC 1 cut(s) 45
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 2 cut(s) 29, 799
BtrI CACGTC 2 cut(s) 223, 235
BtsI GCAGTG 1 cut(s) 605
BtsIMutI CAGTG 2 cut(s) 153, 605
BtuMI TCGCGA 1 cut(s) 212
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 2 cut(s) 116, 414
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 3 cut(s) 236, 611, 703
Csp6I GTAC 1 cut(s) 19
CviAII CATG 4 cut(s) 275, 500, 764, 801
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 5 cut(s) 404, 415, 477, 570, 753
DpnI GATC 2 cut(s) 93, 762
DpnII GATC 2 cut(s) 91, 760
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 797
Eam1104I CTCTTC 3 cut(s) 155, 246, 555
EarI CTCTTC 3 cut(s) 155, 246, 555
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 4 cut(s) 349, 396, 528, 716
Eco88I CYCGRG 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 3 cut(s) 122, 636, 747
FaeI CATG 4 cut(s) 278, 503, 767, 804
FaiI YATR 9 cut(s) 276, 501, 535, 544, 546, 677, 725, 765, 802
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 181
FatI CATG 4 cut(s) 274, 499, 763, 800
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 2 cut(s) 81, 410
Fsp4HI GCNGC 2 cut(s) 81, 410
FspBI CTAG 2 cut(s) 72, 342
GlaI GCGC 2 cut(s) 115, 413
GluI GCNGC 2 cut(s) 81, 410
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 2 cut(s) 29, 799
HapII CCGG 1 cut(s) 111
HgaI GACGC 3 cut(s) 236, 611, 703
HhaI GCGC 2 cut(s) 116, 414
Hin1II CATG 4 cut(s) 278, 503, 767, 804
Hin6I GCGC 2 cut(s) 114, 412
HinP1I GCGC 2 cut(s) 114, 412
HincII GTYRAC 2 cut(s) 69, 652
HindII GTYRAC 2 cut(s) 69, 652
HindIII AAGCTT 2 cut(s) 296, 584
HinfI GANTC 5 cut(s) 5, 137, 246, 345, 419
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 4 cut(s) 69, 226, 601, 652
Hpy188I TCNGA 6 cut(s) 10, 91, 142, 245, 368, 691
Hpy188III TCNNGA 3 cut(s) 95, 211, 661
Hpy8I GTNNAC 4 cut(s) 69, 226, 601, 652
Hpy99I CGWCG 4 cut(s) 14, 38, 134, 137
HpyAV CCTTC 3 cut(s) 40, 658, 691
HpyCH4III ACNGT 4 cut(s) 18, 148, 208, 687
HpyCH4IV ACGT 5 cut(s) 60, 192, 222, 234, 550
HpyCH4V TGCA 4 cut(s) 426, 487, 610, 745
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 236, 409, 575
HpyF3I CTNAG 5 cut(s) 404, 415, 477, 570, 753
HpySE526I ACGT 5 cut(s) 60, 192, 222, 234, 550
Hsp92II CATG 4 cut(s) 278, 503, 767, 804
HspAI GCGC 2 cut(s) 114, 412
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 2 cut(s) 91, 760
LguI GCTCTTC 2 cut(s) 155, 246
LmnI GCTCC 1 cut(s) 829
LweI GCATC 2 cut(s) 392, 474
MaeI CTAG 2 cut(s) 72, 342
MaeII ACGT 5 cut(s) 60, 192, 222, 234, 550
MaeIII GTNAC 1 cut(s) 511
MalI GATC 2 cut(s) 93, 762
MboI GATC 2 cut(s) 91, 760
MboII GAAGA 8 cut(s) 50, 172, 263, 344, 355, 389, 572, 812
MfeI CAATTG 1 cut(s) 824
MhlI GDGCHC 1 cut(s) 632
MlsI TGGCCA 1 cut(s) 799
MluCI AATT 7 cut(s) 85, 316, 492, 734, 791, 824, 836
MluNI TGGCCA 1 cut(s) 799
MlyI GAGTC 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 7 cut(s) 91, 211, 399, 440, 496, 568, 640
Mox20I TGGCCA 1 cut(s) 799
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 799
MseI TTAA 2 cut(s) 588, 737
Msp20I TGGCCA 1 cut(s) 799
MspA1I CMGCKG 4 cut(s) 80, 157, 403, 481
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 3 cut(s) 124, 638, 749
MunI CAATTG 1 cut(s) 824
MvaI CCWGG 3 cut(s) 124, 638, 749
MvnI CGCG 2 cut(s) 116, 212
MwoI GCNNNNNNNGC 4 cut(s) 113, 236, 409, 575
NdeII GATC 2 cut(s) 91, 760
NlaIII CATG 4 cut(s) 278, 503, 767, 804
NlaIV GGNNCC 1 cut(s) 831
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 511
NruI TCGCGA 1 cut(s) 212
NspI RCATGY 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 95
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 2 cut(s) 155, 246
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 137, 345, 419
PfoI TCCNGGA 2 cut(s) 122, 636
PkrI GCNGC 2 cut(s) 82, 411
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 193
PscI ACATGT 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 122, 636, 747
PspGI CCWGG 3 cut(s) 122, 636, 747
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 1 cut(s) 120
PvuII CAGCTG 2 cut(s) 403, 481
RruI TCGCGA 1 cut(s) 212
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SapI GCTCTTC 2 cut(s) 155, 246
SaqAI TTAA 2 cut(s) 588, 737
SatI GCNGC 2 cut(s) 81, 410
Sau3AI GATC 2 cut(s) 91, 760
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 3 cut(s) 124, 638, 749
SduI GDGCHC 1 cut(s) 632
SfaNI GCATC 2 cut(s) 392, 474
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 702
SmoI CTYRAG 2 cut(s) 95, 702
Sse9I AATT 7 cut(s) 85, 316, 492, 734, 791, 824, 836
SsiI CCGC 4 cut(s) 80, 157, 239, 409
SspMI CTAG 2 cut(s) 72, 342
StyD4I CCNGG 3 cut(s) 122, 636, 747
TaaI ACNGT 4 cut(s) 18, 148, 208, 687
TaiI ACGT 5 cut(s) 63, 195, 225, 237, 553
TaqI TCGA 4 cut(s) 33, 96, 249, 660
TaqII GACCGA 1 cut(s) 54
TasI AATT 7 cut(s) 85, 316, 492, 734, 791, 824, 836
TatI WGTACW 1 cut(s) 18
TauI GCSGC 2 cut(s) 83, 412
TfiI GAWTC 3 cut(s) 137, 345, 419
Tru1I TTAA 2 cut(s) 588, 737
Tru9I TTAA 2 cut(s) 588, 737
TscAI CASTG 2 cut(s) 153, 612
TseFI GTSAC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 2 cut(s) 561, 609
TspRI CASTG 2 cut(s) 153, 612
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 3 cut(s) 85, 316, 791
XceI RCATGY 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 72, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.