Rroxscaffold_3G00225190

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000316
Physical Location & Seq
Forward (+)
8385212 .. 8402971
17760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225190.1

Sequence Viewer

Length: 768 bp
ATGGTGGAGGAGGCTGAAAAGCTTAAAGATGAAGTCGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGCTTTGAGAAGGATTTAGATATAACAGACCTGAAGGCTCAAGTAGTCAGCCTCAGTAGTATGGTTGAACCATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCACAGGACGTTAGGAGTCAGCATACTGCATCTGTTGGGAGCAGTTACAAGTTAGTGGAGGACATTAGTCCATCTGCATCAGAAAATTCCGCAGTTGGAACATCTAAAACGGCAGCTCCAGTTTGCTGCTCAAGCACTAAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGCGTCCAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACTATCAGAGATTGCTAATGGCGTTTTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGATTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTTCAGAAGCCTGCTGAACCGGAAGGGAACTTTGGAGCAATAAAGAAACCATTAACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAAGCTGGCCCAAGAAAAAAGGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAGACCCAATTTCCTCAGTGCCAGTAAATATGGAAGGAAATGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

26.89

Weight (kDa)

7.45

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 720
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 283, 340
AcuI CTGAAG 3 cut(s) 143, 545, 564
AfaI GTAC 1 cut(s) 655
AgsI TTSAA 3 cut(s) 158, 496, 504
AhlI ACTAGT 1 cut(s) 571
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 7 cut(s) 22, 93, 184, 314, 390, 671, 709
AluI AGCT 7 cut(s) 22, 93, 184, 314, 390, 671, 709
Alw21I GWGCWC 2 cut(s) 68, 571
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 1 cut(s) 369
AoxI GGCC 1 cut(s) 673
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 5 cut(s) 311, 324, 413, 426, 662
ApoI RAATTY 2 cut(s) 283, 340
AspS9I GGNCC 1 cut(s) 674
AsuHPI GGTGA 1 cut(s) 661
BaeGI GKGCMC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 395
Bbv12I GWGCWC 2 cut(s) 68, 571
BbvI GCAGC 5 cut(s) 311, 323, 425, 438, 649
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 1 cut(s) 187
BcuI ACTAGT 1 cut(s) 571
BfaI CTAG 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 717
BisI GCNGC 5 cut(s) 312, 325, 414, 427, 663
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 5 cut(s) 313, 326, 415, 428, 664
Bme1390I CCNGG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 236, 284
BoxI GACNNNNGTC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 114, 313
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bse1I ACTGG 3 cut(s) 317, 510, 740
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 3 cut(s) 157, 171, 747
BseNI ACTGG 3 cut(s) 317, 510, 740
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 5 cut(s) 311, 323, 425, 438, 649
BsgI GTGCAG 2 cut(s) 432, 445
BshFI GGCC 1 cut(s) 675
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 2 cut(s) 68, 571
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 1 cut(s) 675
Bsp1286I GDGCHC 2 cut(s) 68, 571
Bsp143I GATC 2 cut(s) 187, 374
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 3 cut(s) 156, 172, 746
BspLI GGNNCC 1 cut(s) 397
BspPI GGATC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 3 cut(s) 317, 510, 740
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 187, 374
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 520, 718
Bst6I CTCTTC 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 585, 673, 699
BstDEI CTNAG 4 cut(s) 143, 180, 336, 733
BstKTI GATC 2 cut(s) 190, 377
BstMBI GATC 2 cut(s) 187, 374
BstMWI GCNNNNNNNGC 2 cut(s) 330, 668
BstNI CCWGG 1 cut(s) 74
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 571
BstV1I GCAGC 5 cut(s) 311, 323, 425, 438, 649
BsuRI GGCC 1 cut(s) 675
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 4 cut(s) 41, 517, 525, 741
Cac8I GCNNGC 3 cut(s) 585, 673, 699
Cfr13I GGNCC 1 cut(s) 674
CseI GACGC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 654
CviAII CATG 3 cut(s) 69, 191, 402
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 4 cut(s) 143, 180, 336, 733
DpnI GATC 2 cut(s) 189, 376
DpnII GATC 2 cut(s) 187, 374
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 1 cut(s) 378
Eco57I CTGAAG 3 cut(s) 143, 545, 564
EcoRI GAATTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 3 cut(s) 72, 194, 405
FaiI YATR 9 cut(s) 70, 113, 152, 192, 222, 403, 533, 644, 749
FaqI GGGAC 1 cut(s) 428
FatI CATG 3 cut(s) 68, 190, 401
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 312, 325, 414, 427, 663
Fsp4HI GCNGC 5 cut(s) 312, 325, 414, 427, 663
FspBI CTAG 1 cut(s) 572
GluI GCNGC 5 cut(s) 312, 325, 414, 427, 663
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 675
HapII CCGG 1 cut(s) 593
HgaI GACGC 1 cut(s) 405
Hin1II CATG 3 cut(s) 72, 194, 405
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 214, 461, 539, 703
HpaII CCGG 1 cut(s) 593
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 3 cut(s) 88, 569, 721
Hpy188I TCNGA 5 cut(s) 280, 475, 544, 564, 579
Hpy8I GTNNAC 3 cut(s) 88, 569, 721
HpyAV CCTTC 5 cut(s) 94, 118, 539, 590, 746
HpyCH4III ACNGT 2 cut(s) 520, 718
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 668
HpyF3I CTNAG 4 cut(s) 143, 180, 336, 733
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 3 cut(s) 72, 194, 405
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 187, 374
LmnI GCTCC 3 cut(s) 237, 319, 608
Lsp1109I GCAGC 5 cut(s) 311, 323, 425, 438, 649
LweI GCATC 2 cut(s) 236, 284
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 4 cut(s) 198, 242, 458, 712
MalI GATC 2 cut(s) 189, 376
MboI GATC 2 cut(s) 187, 374
MboII GAAGA 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 68, 571
MluCI AATT 4 cut(s) 283, 340, 633, 726
MlyI GAGTC 2 cut(s) 223, 455
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 8 cut(s) 4, 31, 76, 152, 250, 409, 529, 742
MseI TTAA 3 cut(s) 24, 164, 626
MslI CAYNNNNRTG 1 cut(s) 647
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 330, 668
NdeII GATC 2 cut(s) 187, 374
NlaIII CATG 3 cut(s) 72, 194, 405
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 2 cut(s) 198, 458
PfeI GAWTC 2 cut(s) 539, 703
PkrI GCNGC 5 cut(s) 313, 326, 415, 428, 664
PleI GAGTC 2 cut(s) 222, 455
PpsI GAGTC 2 cut(s) 222, 455
PshAI GACNNNNGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 674
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
RseI CAYNNNNRTG 1 cut(s) 647
SaqAI TTAA 3 cut(s) 24, 164, 626
SatI GCNGC 5 cut(s) 312, 325, 414, 427, 663
Sau3AI GATC 2 cut(s) 187, 374
Sau96I GGNCC 1 cut(s) 674
SchI GAGTC 2 cut(s) 223, 455
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 68, 571
SfaNI GCATC 2 cut(s) 236, 284
SfcI CTRYAG 1 cut(s) 717
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 2 cut(s) 129, 328
SmoI CTYRAG 2 cut(s) 129, 328
SpeI ACTAGT 1 cut(s) 571
Sse9I AATT 4 cut(s) 283, 340, 633, 726
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 520, 718
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 36, 373, 455
TasI AATT 4 cut(s) 283, 340, 633, 726
TatI WGTACW 1 cut(s) 653
TfiI GAWTC 2 cut(s) 539, 703
Tru1I TTAA 3 cut(s) 24, 164, 626
Tru9I TTAA 3 cut(s) 24, 164, 626
TscAI CASTG 4 cut(s) 48, 517, 525, 741
TseFI GTSAC 2 cut(s) 198, 458
TseI GCWGC 5 cut(s) 311, 324, 413, 426, 662
Tsp45I GTSAC 2 cut(s) 198, 458
TspDTI ATGAA 2 cut(s) 45, 374
TspRI CASTG 4 cut(s) 48, 517, 525, 741
VneI GTGCAC 1 cut(s) 567
XapI RAATTY 2 cut(s) 283, 340
XmiI GTMKAC 1 cut(s) 720
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.