Rorug07G0296900

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000316
Physical Location & Seq
Forward (+)
29229728 .. 29230792
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0296900.1

Sequence Viewer

Length: 402 bp
ATGGCGTGCCTATCATCCACATCTCTTTCGACTCTGCGTTTCTCCAACGATCTAACGTCGGCGGCGTCGGTGTCCTTTGCGAGATCGGGCCTGGCGGTTCGGGTTACGAATCCGGGTGGGCAGAGGAAGGCGATGAGAGTGATGGCGGTGGCCAAGTTCAAGGGGACGCAGATGAGGGAGAAGCGGCTGACGGAGATGATCGAGAAGAAGGTTCTGGAAGCCAAGCAGGTGTGCGGCGAGGGAGATCCGATCACGGACGAGTGCAAGGTGGCGTGGGACGAGGTGGAGGAGGTGAGTCAAGCCAAGGCCGATCTCAGGCTCAAAATGAAGGACAGTGATCCTCTCGAGTCGTTTTGCGAGGACAATCCTGAGACGGACGAGTGCCGAATCTACGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.79

Weight (kDa)

5.04

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CP12 PF02672 63 - 132 5.4e-24 CP12 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AciI CCGC 5 cut(s) 62, 95, 146, 184, 234
AclWI GGATC 2 cut(s) 239, 332
AcoI YGGCCR 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 239, 332
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 3 cut(s) 88, 150, 306
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 344
BalI TGGCCA 1 cut(s) 152
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 92
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 3 cut(s) 63, 185, 235
BlsI GCNGC 3 cut(s) 64, 186, 236
Bme1390I CCNGG 2 cut(s) 92, 114
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 92, 114
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 2 cut(s) 328, 360
BseRI GAGGAG 1 cut(s) 302
BshFI GGCC 3 cut(s) 90, 152, 308
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 178, 290
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 365
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 178, 290
BsnI GGCC 3 cut(s) 90, 152, 308
BsoBI CYCGRG 1 cut(s) 344
Bsp143I GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
BspACI CCGC 5 cut(s) 62, 95, 146, 184, 234
BspANI GGCC 3 cut(s) 90, 152, 308
BspCNI CTCAG 2 cut(s) 327, 361
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 2 cut(s) 239, 332
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 335
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 314, 369
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 7 cut(s) 52, 86, 201, 247, 252, 313, 340
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 90, 112
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 3 cut(s) 90, 152, 308
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 88
CseI GACGC 2 cut(s) 54, 175
CviJI RGCY 7 cut(s) 90, 152, 187, 221, 302, 308, 319
CviKI_1 RGCY 7 cut(s) 90, 152, 187, 221, 302, 308, 319
DdeI CTNAG 2 cut(s) 314, 369
DpnI GATC 7 cut(s) 51, 85, 200, 246, 251, 312, 339
DpnII GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
EaeI YGGCCR 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 365
FaqI GGGAC 2 cut(s) 178, 290
Fnu4HI GCNGC 3 cut(s) 63, 185, 235
Fsp4HI GCNGC 3 cut(s) 63, 185, 235
GluI GCNGC 3 cut(s) 63, 185, 235
HaeIII GGCC 3 cut(s) 90, 152, 308
HapII CCGG 1 cut(s) 113
HgaI GACGC 2 cut(s) 54, 175
Hin1I GRCGYC 1 cut(s) 65
HinfI GANTC 5 cut(s) 31, 109, 295, 347, 387
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 4 cut(s) 202, 215, 344, 368
Hpy99I CGWCG 2 cut(s) 61, 70
HpyAV CCTTC 3 cut(s) 121, 202, 322
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 314, 369
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 1 cut(s) 65
Kzo9I GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
LpnPI CCDG 7 cut(s) 77, 104, 126, 200, 212, 301, 381
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 103
MalI GATC 7 cut(s) 51, 85, 200, 246, 251, 312, 339
MboI GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
MboII GAAGA 1 cut(s) 217
MflI RGATCY 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 3 cut(s) 25, 304, 356
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 9 cut(s) 117, 168, 232, 274, 280, 283, 351, 352, 388
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 92, 114
MvaI CCWGG 1 cut(s) 92
NciI CCSGG 1 cut(s) 114
NdeII GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
PaeR7I CTCGAG 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PfeI GAWTC 2 cut(s) 109, 387
PkrI GCNGC 3 cut(s) 64, 186, 236
PleI GAGTC 3 cut(s) 25, 303, 355
PpsI GAGTC 3 cut(s) 25, 303, 355
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 244
SatI GCNGC 3 cut(s) 63, 185, 235
Sau3AI GATC 7 cut(s) 49, 83, 198, 244, 249, 310, 337
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 3 cut(s) 25, 304, 356
ScrFI CCNGG 2 cut(s) 92, 114
SetI ASST 6 cut(s) 59, 213, 231, 270, 285, 294
Sfr274I CTCGAG 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SsiI CCGC 5 cut(s) 62, 95, 146, 184, 234
StyD4I CCNGG 2 cut(s) 90, 112
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 29, 201, 345
TauI GCSGC 3 cut(s) 65, 187, 237
TfiI GAWTC 2 cut(s) 109, 387
TscAI CASTG 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 3 cut(s) 206, 269, 389
TspRI CASTG 1 cut(s) 340
XhoI CTCGAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.