Rh6AG184000

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000316
Physical Location & Seq
Reverse (-)
32333839 .. 32334144
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG184000.1

Sequence Viewer

Length: 306 bp
ATGAACTGTGAAAGCACATCTGAAGTTAAGGTAATTGAGTTGAGCGATGACGATGAAGATGTAATGGTTTCAGTTAAAACACCTGCACTTGAAGTCCCAGGTTCTGATTTATGGTATTGTATGAGTCCACTTGGTGAAATGAGGGGCCCCTATAAATTGTCATTGCTAAAGCTATGGAGCGTCTCGAGTGGCAATGAATTAAGATACAAGGTTTGGAGAGTGGGTCAGAGCAAAGAGGAGGCAATCTTTCTCAATGATGCCATTCACGGAAATTTTCCACCATGTAGAAATGCTTCCAAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GYF Plus-3 SWIB

Protein Analysis

101

Amino Acids

11.34

Weight (kDa)

4.91

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 91
Acc36I ACCTGC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 1 cut(s) 145
ApaI GGGCCC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 145, 146
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 149
BarI GAAGNNNNNNTAC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 145, 146
BmiI GGNNCC 3 cut(s) 146, 147, 148
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bse3DI GCAATG 2 cut(s) 161, 199
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 97
BseMI GCAATG 2 cut(s) 161, 199
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 184
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 149
BspANI GGCC 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 146, 147, 148
BspMI ACCTGC 1 cut(s) 91
BsrDI GCAATG 2 cut(s) 161, 199
BssECI CCNNGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 8
BstMAI GTCTC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 145, 146
CseI GACGC 1 cut(s) 169
CviAII CATG 1 cut(s) 282
CviJI RGCY 2 cut(s) 147, 172
CviKI_1 RGCY 2 cut(s) 147, 172
DraIII CACNNNGTG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 184
EcoO109I RGGNCCY 2 cut(s) 145, 146
EcoRII CCWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 285
FaiI YATR 5 cut(s) 112, 122, 153, 175, 283
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 169
Hin1II CATG 1 cut(s) 285
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 3 cut(s) 22, 106, 228
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 86
Hsp92II CATG 1 cut(s) 285
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 3 cut(s) 84, 96, 111
LweI GCATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 5 cut(s) 33, 155, 197, 271, 299
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 3 cut(s) 135, 229, 232
MroXI GAANNNNTTC 1 cut(s) 292
MseI TTAA 3 cut(s) 27, 75, 200
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 3 cut(s) 146, 147, 148
PaeR7I CTCGAG 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 292
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 146, 147, 148
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 145, 146
PstNI CAGNNNCTG 1 cut(s) 104
SaqAI TTAA 3 cut(s) 27, 75, 200
Sau96I GGNCC 2 cut(s) 145, 146
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 149
SetI ASST 5 cut(s) 33, 85, 103, 174, 213
SfaNI GCATC 1 cut(s) 247
Sfr274I CTCGAG 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 5 cut(s) 33, 155, 197, 271, 299
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 185
TasI AATT 5 cut(s) 33, 155, 197, 271, 299
Tru1I TTAA 3 cut(s) 27, 75, 200
Tru9I TTAA 3 cut(s) 27, 75, 200
TspDTI ATGAA 3 cut(s) 17, 69, 210
TspGWI ACGGA 1 cut(s) 282
XapI RAATTY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.