Rh7AG412900

Plus-3 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000316
Physical Location & Seq
Reverse (-)
55339623 .. 55341149
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG412900.1

Sequence Viewer

Length: 588 bp
ATGTCAGACAGCGACACTAGTGGCACTGGTGTTACAGAAATTCAGAAGCCAATGAGATTAAGAAAGGGATCTAAGCGACTAGAGTTTATAGGATGGGGTTCTAAACCTCTCATTGAGTTTCTAAGATCCATTGGGAAGGATACAACTGAGAAGATATCCCAGCTTGATTTGGACAAGATTATCTGGGAACATCTTGCCGAGAACATAACAGAGGATAGTGGAAGCGAGGATGAGGAAGAAATCAAATTGGAAGATAAGAACAATGGTACTACGCATGAACGCAAGAAGAGAAGAGTGAGCTCTGATACAACCATAGCATCTGATGAAAAGAAAGCAAGTCCTAGATTCCAAAAGGGCTGTTTCGCATCTATTATCCCTGAGAATATGAAGCTTGTTTACGTAAAGAGGAGCTTACTGGAGAAGTTACTGAAGGAGCCTGATCATTCGGAAAGCAAGGTACTAGGGAGTTTTGTGAGAGTGAAAAATAACCCCCTAGACTACCTTCAGAGAAATACTCACCAACTTTCACAAGTTAAAGGTATTGTGTGTACTATGCAGTCAATATCATGTGATGCATTCTGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

195

Amino Acids

22.18

Weight (kDa)

7.65

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 128 - 181 5.4e-08 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 76, 120
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 2 cut(s) 449, 488
AfaI GTAC 3 cut(s) 268, 459, 550
AhlI ACTAGT 1 cut(s) 17
AluBI AGCT 4 cut(s) 163, 300, 391, 411
AluI AGCT 4 cut(s) 163, 300, 391, 411
Alw21I GWGCWC 1 cut(s) 302
AlwI GGATC 2 cut(s) 76, 120
ApoI RAATTY 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 509
BanII GRGCYC 1 cut(s) 302
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
Bbv12I GWGCWC 1 cut(s) 302
BccI CCATC 1 cut(s) 87
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 439
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 5 cut(s) 18, 80, 342, 461, 494
BfuI GTATCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 435
BmsI GCATC 3 cut(s) 326, 374, 562
BplI GAGNNNNNCTC 2 cut(s) 499, 531
BpmI CTGGAG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 31, 420
BseGI GGATG 2 cut(s) 98, 235
BseMII CTCAG 2 cut(s) 138, 369
BseNI ACTGG 2 cut(s) 31, 420
BseRI GAGGAG 1 cut(s) 421
BseYI CCCAGC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 68, 125, 439
BspCNI CTCAG 2 cut(s) 139, 370
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 2 cut(s) 76, 120
BsrI ACTGG 2 cut(s) 31, 420
BssMI GATC 3 cut(s) 68, 125, 439
Bst6I CTCTTC 2 cut(s) 281, 286
BstBAI YACGTR 1 cut(s) 400
BstDEI CTNAG 4 cut(s) 72, 122, 147, 378
BstF5I GGATG 2 cut(s) 98, 235
BstKTI GATC 3 cut(s) 71, 128, 442
BstMBI GATC 3 cut(s) 68, 125, 439
BstSNI TACGTA 1 cut(s) 400
BstX2I RGATCY 2 cut(s) 68, 125
BstYI RGATCY 2 cut(s) 68, 125
BsuI GTATCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 98, 235
BtsIMutI CAGTG 1 cut(s) 24
Csp6I GTAC 3 cut(s) 267, 458, 549
CviAII CATG 2 cut(s) 275, 567
CviJI RGCY 7 cut(s) 49, 163, 300, 357, 391, 411, 436
CviKI_1 RGCY 7 cut(s) 49, 163, 300, 357, 391, 411, 436
CviQI GTAC 3 cut(s) 267, 458, 549
DdeI CTNAG 4 cut(s) 72, 122, 147, 378
DpnI GATC 3 cut(s) 70, 127, 441
DpnII GATC 3 cut(s) 68, 125, 439
Eam1104I CTCTTC 2 cut(s) 281, 286
EarI CTCTTC 2 cut(s) 281, 286
Ecl136II GAGCTC 1 cut(s) 300
Eco105I TACGTA 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 300
Eco57I CTGAAG 2 cut(s) 449, 488
EcoICRI GAGCTC 1 cut(s) 300
EcoRV GATATC 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 302
FaeI CATG 2 cut(s) 278, 570
FaiI YATR 7 cut(s) 89, 206, 276, 314, 386, 554, 568
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 2 cut(s) 274, 566
FbaI TGATCA 1 cut(s) 439
FokI GGATG 2 cut(s) 105, 242
FriOI GRGCYC 1 cut(s) 302
FspBI CTAG 5 cut(s) 18, 80, 342, 461, 494
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 437
Hin1II CATG 2 cut(s) 278, 570
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 345
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 397, 549
Hpy188I TCNGA 6 cut(s) 7, 45, 304, 322, 448, 507
Hpy8I GTNNAC 2 cut(s) 397, 549
HpyAV CCTTC 3 cut(s) 130, 424, 512
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 556, 575
HpyF3I CTNAG 4 cut(s) 72, 122, 147, 378
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 278, 570
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 68, 125, 439
LmnI GCTCC 2 cut(s) 408, 433
LpnPI CCDG 6 cut(s) 12, 169, 173, 390, 401, 450
LweI GCATC 3 cut(s) 326, 374, 562
MaeI CTAG 5 cut(s) 18, 80, 342, 461, 494
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 31, 423, 581
MalI GATC 3 cut(s) 70, 127, 441
MboI GATC 3 cut(s) 68, 125, 439
MboII GAAGA 5 cut(s) 163, 248, 263, 298, 303
MflI RGATCY 2 cut(s) 68, 125
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 2 cut(s) 39, 245
MnlI CCTC 5 cut(s) 117, 205, 220, 226, 399
Mph1103I ATGCAT 1 cut(s) 577
MseI TTAA 2 cut(s) 59, 534
Mva1269I GAATGC 1 cut(s) 575
NdeII GATC 3 cut(s) 68, 125, 439
NlaIII CATG 2 cut(s) 278, 570
NlaIV GGNNCC 1 cut(s) 435
NmeAIII GCCGAG 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 577
PctI GAATGC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 435
PsuI RGATCY 2 cut(s) 68, 125
RsaI GTAC 3 cut(s) 268, 459, 550
RsaNI GTAC 3 cut(s) 267, 458, 549
SacI GAGCTC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 59, 534
Sau3AI GATC 3 cut(s) 68, 125, 439
SduI GDGCHC 1 cut(s) 302
SetI ASST 9 cut(s) 109, 165, 302, 393, 402, 413, 459, 504, 541
SfaNI GCATC 3 cut(s) 326, 374, 562
SnaBI TACGTA 1 cut(s) 400
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 2 cut(s) 39, 245
SspMI CTAG 5 cut(s) 18, 80, 342, 461, 494
SstI GAGCTC 1 cut(s) 302
TaiI ACGT 1 cut(s) 402
TasI AATT 2 cut(s) 39, 245
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 2 cut(s) 59, 534
Tru9I TTAA 2 cut(s) 59, 534
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 291, 339, 401
TspRI CASTG 1 cut(s) 31
XapI RAATTY 1 cut(s) 39
XspI CTAG 5 cut(s) 18, 80, 342, 461, 494
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.