Rw0G007810

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00286
OG0000316
Physical Location & Seq
Forward (+)
13066 .. 18292
5227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007810.1

Sequence Viewer

Length: 1365 bp
ATGAAGAAGGCCAACCGCCGCTCCAAGCAGACCGCCGACGCGTCCGCCGCCGCCGCCGATTGCGAGAAGCGAGTTCGCGAACTCGAAATCGAAAACAAAGCCTTTCAGAAGGAGGTTGAGGAGCTGAGATACAAGCTTGCAAATGTTTCATCTACTAGTGGTGTGGAGAACAGTGCTCAGAAACTCAGAGAAAACTACCTGCAGAAGTTGACTTTCCTCGAAGATCAGGTTACGGTGTTGACGAGGAAGCTAGATGCTCAATCTCAACTCTCAACCCAAAGAAGAAGAGGGGACGAGTCAGCAAAGCCGTTCCAGTTTGAGATTCAGAGATTGAAGGCTCAGAAGGTTCAAATGCAATGTAAGATGAAACTAGAATCTGTGCAGTTCAGATTGCATAAAGCTTTGTTGGACAAGGAAGTTTTTCAGCTCAAGAAAGAGAGTAGGAAGAAAAAACATGAGATGCACAAGCTATTGGCCTCCAATCAAAGACTGAAGACTGTGAAAGCATCTGTGGCTACTAAACAGCTGAGACGGCTCTTAGAATCTCGCAAGGCTTGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGGTGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGACCTATGCGCTATATATGAACGTCAAATAGAAGAGATGGTGGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGTTTTGAGAAGGATTTAGGTATAACAGACCTGAAGGCTCAAGTAGTCAGCCTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCACAGGGCATTAGGAGTCAGCATACTGCATCTGTTGGGAGCAGTTACAAGTTAGTGGAGGACATTAGTCCATCTGCATCAGAAAATTCCACAGTTGGAACATCTAAAACGGCAGCTCCAGTTTGCTGCTCATGCACTAAGAATTCTTTATGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGCATCCAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACTATCAGAGATTGCTAATGGCATTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTGCGTACAAATGCTGCAAAACCTGGCCCAAGAAAAAAGGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAGACCCAATTTCCTCAGTGCCAGTAAATATGGAAGGAAATGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

50.23

Weight (kDa)

9.22

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 10 - 146 4.1e-25 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 1067
AccBSI CCGCTC 1 cut(s) 21
AccI GTMKAC 1 cut(s) 1317
AccII CGCG 2 cut(s) 41, 78
AciI CCGC 7 cut(s) 16, 19, 33, 45, 48, 51, 54
AclWI GGATC 1 cut(s) 1041
AcsI RAATTY 2 cut(s) 955, 1012
AcuI CTGAAG 5 cut(s) 512, 636, 815, 1217, 1236
AfaI GTAC 1 cut(s) 1252
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 5 cut(s) 334, 350, 634, 830, 1176
AhlI ACTAGT 2 cut(s) 155, 1243
AjnI CCWGG 2 cut(s) 744, 1267
Alw21I GWGCWC 3 cut(s) 178, 740, 1243
Alw26I GTCTC 1 cut(s) 523
Alw44I GTGCAC 1 cut(s) 1239
AlwI GGATC 1 cut(s) 1041
AoxI GGCC 3 cut(s) 9, 474, 1270
ApaLI GTGCAC 1 cut(s) 1239
ApeKI GCWGC 5 cut(s) 983, 996, 1085, 1098, 1259
ApoI RAATTY 2 cut(s) 955, 1012
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 1 cut(s) 1271
BaeGI GKGCMC 1 cut(s) 1243
BanI GGYRCC 1 cut(s) 1067
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 3 cut(s) 178, 740, 1243
BbvI GCAGC 5 cut(s) 983, 995, 1097, 1110, 1246
BccI CCATC 2 cut(s) 667, 949
BceAI ACGGC 3 cut(s) 292, 548, 996
BciT130I CCWGG 2 cut(s) 746, 1269
BclI TGATCA 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 523
BcuI ACTAGT 2 cut(s) 155, 1243
BfaI CTAG 4 cut(s) 156, 251, 371, 1244
BfmI CTRYAG 2 cut(s) 200, 1314
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 9 cut(s) 19, 48, 51, 54, 984, 997, 1086, 1099, 1260
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 9 cut(s) 20, 49, 52, 55, 985, 998, 1087, 1100, 1261
Bme1390I CCNGG 2 cut(s) 746, 1269
BmgT120I GGNCC 1 cut(s) 1271
BmiI GGNNCC 1 cut(s) 1069
BmrFI CCNGG 2 cut(s) 746, 1269
BmsI GCATC 6 cut(s) 244, 450, 515, 908, 956, 1097
BoxI GACNNNNGTC 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 972
Bpu1102I GCTNAGC 1 cut(s) 852
BpuEI CTTGAG 2 cut(s) 413, 786
BsaJI CCNNGG 1 cut(s) 1050
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 970, 1000
Bse1I ACTGG 4 cut(s) 313, 989, 1182, 1337
Bse3DI GCAATG 2 cut(s) 362, 1230
BseBI CCWGG 2 cut(s) 746, 1269
BseDI CCNNGG 1 cut(s) 1050
BseGI GGATG 1 cut(s) 1088
BseMI GCAATG 2 cut(s) 362, 1230
BseMII CTCAG 9 cut(s) 116, 191, 199, 353, 518, 599, 829, 843, 1344
BseNI ACTGG 4 cut(s) 313, 989, 1182, 1337
BseRI GAGGAG 2 cut(s) 134, 695
BseSI GKGCMC 1 cut(s) 1243
BseXI GCAGC 5 cut(s) 983, 995, 1097, 1110, 1246
BsgI GTGCAG 4 cut(s) 401, 614, 1104, 1117
Bsh1236I CGCG 2 cut(s) 41, 78
BshFI GGCC 3 cut(s) 11, 476, 1272
BshNI GGYRCC 1 cut(s) 1067
BsiHKAI GWGCWC 3 cut(s) 178, 740, 1243
BslFI GGGAC 2 cut(s) 305, 1100
BsmAI GTCTC 1 cut(s) 523
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 2 cut(s) 305, 1100
BsmI GAATGC 1 cut(s) 1161
BsnI GGCC 3 cut(s) 11, 476, 1272
Bsp1286I GDGCHC 3 cut(s) 178, 740, 1243
Bsp143I GATC 3 cut(s) 223, 859, 1046
Bsp1720I GCTNAGC 1 cut(s) 852
Bsp68I TCGCGA 1 cut(s) 78
BspACI CCGC 7 cut(s) 16, 19, 33, 45, 48, 51, 54
BspANI GGCC 3 cut(s) 11, 476, 1272
BspCNI CTCAG 9 cut(s) 117, 190, 198, 352, 519, 598, 828, 844, 1343
BspFNI CGCG 2 cut(s) 41, 78
BspLI GGNNCC 1 cut(s) 1069
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 1 cut(s) 1041
BspT107I GGYRCC 1 cut(s) 1067
BsrBI CCGCTC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 362, 1230
BsrI ACTGG 4 cut(s) 313, 989, 1182, 1337
BssECI CCNNGG 1 cut(s) 1050
BssMI GATC 3 cut(s) 223, 859, 1046
BssT1I CCWWGG 1 cut(s) 1050
Bst2UI CCWGG 2 cut(s) 746, 1269
Bst4CI ACNGT 7 cut(s) 173, 235, 499, 764, 964, 1192, 1315
Bst6I CTCTTC 3 cut(s) 280, 663, 1190
BstC8I GCNNGC 2 cut(s) 138, 1296
BstF5I GGATG 1 cut(s) 1088
BstFNI CGCG 2 cut(s) 41, 78
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 3 cut(s) 226, 862, 1049
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 3 cut(s) 223, 859, 1046
BstMWI GCNNNNNNNGC 5 cut(s) 47, 53, 512, 532, 1002
BstNI CCWGG 2 cut(s) 746, 1269
BstPAI GACNNNNGTC 1 cut(s) 936
BstSCI CCNGG 2 cut(s) 744, 1267
BstSFI CTRYAG 2 cut(s) 200, 1314
BstSLI GKGCMC 1 cut(s) 1243
BstUI CGCG 2 cut(s) 41, 78
BstV1I GCAGC 5 cut(s) 983, 995, 1097, 1110, 1246
BstV2I GAAGAC 1 cut(s) 500
BsuRI GGCC 3 cut(s) 11, 476, 1272
BtsCI GGATG 1 cut(s) 1088
BtsI GCAGTG 1 cut(s) 713
BtsIMutI CAGTG 5 cut(s) 178, 713, 1189, 1197, 1338
BtuMI TCGCGA 1 cut(s) 78
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 138, 1296
CfoI GCGC 1 cut(s) 647
Cfr13I GGNCC 1 cut(s) 1271
CseI GACGC 2 cut(s) 30, 47
Csp6I GTAC 1 cut(s) 1251
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 6 cut(s) 455, 608, 741, 863, 1002, 1074
CviQI GTAC 1 cut(s) 1251
DpnI GATC 3 cut(s) 225, 861, 1048
DpnII GATC 3 cut(s) 223, 859, 1046
Eam1104I CTCTTC 3 cut(s) 280, 663, 1190
EarI CTCTTC 3 cut(s) 280, 663, 1190
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 1050
Eco57I CTGAAG 5 cut(s) 512, 636, 815, 1217, 1236
EcoRI GAATTC 1 cut(s) 1012
EcoRII CCWGG 2 cut(s) 744, 1267
EcoT14I CCWWGG 1 cut(s) 1050
ErhI CCWWGG 1 cut(s) 1050
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 6 cut(s) 458, 611, 744, 866, 1005, 1077
FaqI GGGAC 2 cut(s) 305, 1100
FatI CATG 6 cut(s) 454, 607, 740, 862, 1001, 1073
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 1 cut(s) 1317
Fnu4HI GCNGC 9 cut(s) 19, 48, 51, 54, 984, 997, 1086, 1099, 1260
FokI GGATG 1 cut(s) 1075
Fsp4HI GCNGC 9 cut(s) 19, 48, 51, 54, 984, 997, 1086, 1099, 1260
FspBI CTAG 4 cut(s) 156, 251, 371, 1244
GlaI GCGC 1 cut(s) 646
GluI GCNGC 9 cut(s) 19, 48, 51, 54, 984, 997, 1086, 1099, 1260
GsuI CTGGAG 1 cut(s) 972
HaeIII GGCC 3 cut(s) 11, 476, 1272
HgaI GACGC 2 cut(s) 30, 47
HhaI GCGC 1 cut(s) 647
Hin1II CATG 6 cut(s) 458, 611, 744, 866, 1005, 1077
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 3 cut(s) 210, 240, 760
HindII GTYRAC 3 cut(s) 210, 240, 760
HindIII AAGCTT 3 cut(s) 134, 399, 692
HinfI GANTC 7 cut(s) 296, 322, 374, 542, 886, 1133, 1300
Hpy166II GTNNAC 5 cut(s) 210, 240, 760, 1241, 1318
Hpy188III TCNNGA 2 cut(s) 77, 430
Hpy8I GTNNAC 5 cut(s) 210, 240, 760, 1241, 1318
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 7 cut(s) 103, 328, 337, 766, 790, 1211, 1343
HpyCH4III ACNGT 7 cut(s) 173, 235, 499, 764, 964, 1192, 1315
HpyCH4IV ACGT 1 cut(s) 658
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 53, 512, 532, 1002
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 6 cut(s) 458, 611, 744, 866, 1005, 1077
HspAI GCGC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 3 cut(s) 223, 859, 1046
LmnI GCTCC 4 cut(s) 26, 121, 909, 991
Lsp1109I GCAGC 5 cut(s) 983, 995, 1097, 1110, 1246
LweI GCATC 6 cut(s) 244, 450, 515, 908, 956, 1097
MaeI CTAG 4 cut(s) 156, 251, 371, 1244
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 6 cut(s) 229, 619, 870, 914, 1130, 1309
MalI GATC 3 cut(s) 225, 861, 1048
MbiI CCGCTC 1 cut(s) 21
MboI GATC 3 cut(s) 223, 859, 1046
MboII GAAGA 8 cut(s) 16, 233, 294, 297, 457, 505, 680, 1207
MhlI GDGCHC 3 cut(s) 178, 740, 1243
MluCI AATT 5 cut(s) 600, 833, 955, 1012, 1323
MluI ACGCGT 1 cut(s) 39
MlyI GAGTC 3 cut(s) 305, 895, 1127
MmeI TCCRAC 2 cut(s) 387, 946
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 696, 836
MslI CAYNNNNRTG 1 cut(s) 1093
MspA1I CMGCKG 2 cut(s) 526, 589
MspR9I CCNGG 2 cut(s) 746, 1269
Mva1269I GAATGC 1 cut(s) 1161
MvaI CCWGG 2 cut(s) 746, 1269
MvnI CGCG 2 cut(s) 41, 78
MwoI GCNNNNNNNGC 5 cut(s) 47, 53, 512, 532, 1002
NdeII GATC 3 cut(s) 223, 859, 1046
NlaIII CATG 6 cut(s) 458, 611, 744, 866, 1005, 1077
NlaIV GGNNCC 1 cut(s) 1069
NmuCI GTSAC 3 cut(s) 619, 870, 1130
NruI TCGCGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PctI GAATGC 1 cut(s) 1161
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 4 cut(s) 322, 374, 542, 1300
PkrI GCNGC 9 cut(s) 20, 49, 52, 55, 985, 998, 1087, 1100, 1261
PleI GAGTC 3 cut(s) 304, 894, 1127
PpsI GAGTC 3 cut(s) 304, 894, 1127
PshAI GACNNNNGTC 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 744, 1267
PspGI CCWGG 2 cut(s) 744, 1267
PspN4I GGNNCC 1 cut(s) 1069
PspPI GGNCC 1 cut(s) 1271
PstI CTGCAG 1 cut(s) 204
PvuII CAGCTG 2 cut(s) 526, 589
RruI TCGCGA 1 cut(s) 78
RsaI GTAC 1 cut(s) 1252
RsaNI GTAC 1 cut(s) 1251
RseI CAYNNNNRTG 1 cut(s) 1093
SaqAI TTAA 2 cut(s) 696, 836
SatI GCNGC 9 cut(s) 19, 48, 51, 54, 984, 997, 1086, 1099, 1260
Sau3AI GATC 3 cut(s) 223, 859, 1046
Sau96I GGNCC 1 cut(s) 1271
SchI GAGTC 3 cut(s) 305, 895, 1127
ScrFI CCNGG 2 cut(s) 746, 1269
SduI GDGCHC 3 cut(s) 178, 740, 1243
SfaNI GCATC 6 cut(s) 244, 450, 515, 908, 956, 1097
SfcI CTRYAG 2 cut(s) 200, 1314
SmiMI CAYNNNNRTG 1 cut(s) 1093
SmlI CTYRAG 2 cut(s) 428, 801
SmoI CTYRAG 2 cut(s) 428, 801
SpeI ACTAGT 2 cut(s) 155, 1243
Sse9I AATT 5 cut(s) 600, 833, 955, 1012, 1323
SsiI CCGC 7 cut(s) 16, 19, 33, 45, 48, 51, 54
SspMI CTAG 4 cut(s) 156, 251, 371, 1244
StyD4I CCNGG 2 cut(s) 744, 1267
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 7 cut(s) 173, 235, 499, 764, 964, 1192, 1315
TaiI ACGT 1 cut(s) 661
TaqI TCGA 5 cut(s) 84, 90, 219, 1045, 1127
TasI AATT 5 cut(s) 600, 833, 955, 1012, 1323
TauI GCSGC 4 cut(s) 21, 50, 53, 56
TfiI GAWTC 4 cut(s) 322, 374, 542, 1300
Tru1I TTAA 2 cut(s) 696, 836
Tru9I TTAA 2 cut(s) 696, 836
TscAI CASTG 5 cut(s) 178, 720, 1189, 1197, 1338
TseFI GTSAC 3 cut(s) 619, 870, 1130
TseI GCWGC 5 cut(s) 983, 996, 1085, 1098, 1259
Tsp45I GTSAC 3 cut(s) 619, 870, 1130
TspDTI ATGAA 6 cut(s) 17, 138, 380, 669, 717, 1046
TspRI CASTG 5 cut(s) 178, 720, 1189, 1197, 1338
VneI GTGCAC 1 cut(s) 1239
XapI RAATTY 2 cut(s) 955, 1012
XmiI GTMKAC 1 cut(s) 1317
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 4 cut(s) 156, 251, 371, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.