pycom08g17030

Chromosome-associated kinesin

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
17222104 .. 17222849
746 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17030.4

Sequence Viewer

Length: 234 bp
ATGCATAAGCTATTGGACTCCAATCAAAGACTGAAGAAGGTTTTGCATCGAAAGAATATGGAAGCTTTCATGGCCACTAAACGGCTCAGGCAGCTGTCAGAATCTCGCAAGGCTTTGTTGCACCAAAAAGGTGCTAAAAATGGGAAGATTGAAGCAATTCAGGGTATTGAATATGAGTTTAACGAAACAGCAGAGTTACACGAACGAGTTACACGAACTATGTGCTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.04

Weight (kDa)

10.0

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 2 cut(s) 152, 170
AluBI AGCT 3 cut(s) 10, 65, 94
AluI AGCT 3 cut(s) 10, 65, 94
Alw21I GWGCWC 1 cut(s) 227
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 98
BcgI CGANNNNNNTGC 1 cut(s) 204
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
BmsI GCATC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 227
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 86
BstMWI GCNNNNNNNGC 2 cut(s) 71, 91
BstV1I GCAGC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 74
CviAII CATG 1 cut(s) 70
CviJI RGCY 6 cut(s) 10, 65, 74, 85, 94, 113
CviKI_1 RGCY 6 cut(s) 10, 65, 74, 85, 94, 113
DdeI CTNAG 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 73
FaiI YATR 6 cut(s) 6, 59, 71, 174, 221, 232
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 2 cut(s) 17, 101
Hpy188I TCNGA 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 4, 46, 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 91
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 1 cut(s) 73
LpnPI CCDG 2 cut(s) 73, 146
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 195, 208
MboII GAAGA 2 cut(s) 46, 157
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 156
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 11
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 156
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 71, 91
NlaIII CATG 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 94
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 92
SchI GAGTC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 227
SetI ASST 5 cut(s) 12, 42, 67, 96, 133
SfaNI GCATC 1 cut(s) 55
SgeI CNNG 8 cut(s) 82, 100, 117, 121, 173, 212, 218, 225
Sse9I AATT 1 cut(s) 156
TaqI TCGA 1 cut(s) 49
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.