Rroxscaffold_3G00229880

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000316
Physical Location & Seq
Forward (+)
14462449 .. 14465446
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229880.1

Sequence Viewer

Length: 753 bp
ATGAAGAACAAGAAGAAGAAGAGGGTGGAGGAGGAAGACAAGGATTCAGAGGATTGGTGCTTCTGCTGCTATGATGGTGGAGATCTTATGATTTGCGACCACAAGAGTTGCTTAAAAGTGTATCATCCAGGATGCGTAGGAAAAAAGAAAAACTCCATGTACTCTGGAAAGCGCTGGACTTGTAGTAGGCATTCTTGTGTAGTGTGCTCTGGTACCTCAAGGTTTTATTGCCTTTGTTGTCCACATGCATTATGTAGAGATTGCATAGGTGCTTCTGAACTTGCACTACTAAGGGGGAAGAATGGCTTGTGCAAGAGCTGTGTAAAGCGTATTCTGCTGGCAAAAGAAAACTCAGAATATGGTTTAGAGGGAGATAAAATAGACTTAGAGGATCAAGATGAATGGCTATTCAAAGAATATTGGGAGATTGTAAAGGAAAAGGAAGGATTGACTTCAGGCGATGTTTATTCAGCAAATGCCGATTTAAAGAAGAGAGAAAATCAAAGCTGCAGATTCTTACCTGTAAATATTAGTGAGAGTGACGAAAGGGAACATCTTGTCGAGAACATAACAGAGGATAGTGGAAGCGAGGATGAGGAAGAAATCAAATTGGAAGATAAGAACAATGGTACTACGCATGAACGCAAGAAGAGAAGAGTGAGCTCTGATACAACCATAGCATCTGATGAAAAGAAAGCAAGTCCTAGATTCCAAAAGGGCTGTTTCGCATCTATTATATCCCTGAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

250

Amino Acids

28.56

Weight (kDa)

6.35

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AclWI GGATC 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 3 cut(s) 161, 214, 631
AfeI AGCGCT 1 cut(s) 173
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 3 cut(s) 318, 507, 663
AluI AGCT 3 cut(s) 318, 507, 663
Alw21I GWGCWC 2 cut(s) 209, 665
AlwI GGATC 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 66, 507
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 665
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 209, 665
BbvI GCAGC 2 cut(s) 53, 494
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 175
BglII AGATCT 1 cut(s) 82
BisI GCNGC 2 cut(s) 67, 508
BlsI GCNGC 2 cut(s) 68, 509
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 3 cut(s) 122, 689, 737
BpiI GAAGAC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 3 cut(s) 124, 137, 598
BseMII CTCAG 2 cut(s) 366, 734
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 53, 494
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 209, 665
BsmI GAATGC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 209, 665
Bsp143I GATC 2 cut(s) 82, 391
BspCNI CTCAG 2 cut(s) 365, 735
BspLI GGNNCC 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 512
BspPI GGATC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 212
BssMI GATC 2 cut(s) 82, 391
Bst2UI CCWGG 1 cut(s) 129
Bst6I CTCTTC 4 cut(s) 14, 485, 644, 649
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 290, 352, 385, 743
BstF5I GGATG 3 cut(s) 124, 137, 598
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 85, 394
BstMBI GATC 2 cut(s) 82, 391
BstMWI GCNNNNNNNGC 2 cut(s) 66, 334
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 53, 494
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 3 cut(s) 124, 137, 598
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 174
Csp6I GTAC 3 cut(s) 160, 213, 630
CspCI CAANNNNNGTGG 2 cut(s) 89, 124
CviAII CATG 3 cut(s) 157, 245, 638
CviJI RGCY 6 cut(s) 306, 318, 406, 507, 663, 720
CviKI_1 RGCY 6 cut(s) 306, 318, 406, 507, 663, 720
CviQI GTAC 3 cut(s) 160, 213, 630
DdeI CTNAG 4 cut(s) 290, 352, 385, 743
DpnI GATC 2 cut(s) 84, 393
DpnII GATC 2 cut(s) 82, 391
DraI TTTAAA 1 cut(s) 486
Eam1104I CTCTTC 4 cut(s) 14, 485, 644, 649
EarI CTCTTC 4 cut(s) 14, 485, 644, 649
Ecl136II GAGCTC 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 665
Eco47III AGCGCT 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 665
FaeI CATG 3 cut(s) 160, 248, 641
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 290, 322
FatI CATG 3 cut(s) 156, 244, 637
Fnu4HI GCNGC 2 cut(s) 67, 508
FokI GGATG 3 cut(s) 111, 144, 605
FriOI GRGCYC 1 cut(s) 665
Fsp4HI GCNGC 2 cut(s) 67, 508
FspBI CTAG 1 cut(s) 705
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 67, 508
HaeII RGCGCY 1 cut(s) 175
HhaI GCGC 1 cut(s) 174
Hin1II CATG 3 cut(s) 160, 248, 641
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 3 cut(s) 44, 513, 708
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 5 cut(s) 49, 277, 355, 667, 685
Hpy188III TCNNGA 3 cut(s) 165, 395, 562
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 437
HpyCH4V TGCA 5 cut(s) 248, 264, 284, 312, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 334
HpyF3I CTNAG 4 cut(s) 290, 352, 385, 743
Hsp92II CATG 3 cut(s) 160, 248, 641
HspAI GCGC 1 cut(s) 172
KpnI GGTACC 1 cut(s) 216
Kzo9I GATC 2 cut(s) 82, 391
LpnPI CCDG 8 cut(s) 114, 141, 150, 160, 195, 323, 441, 534
Lsp1109I GCAGC 2 cut(s) 53, 494
LweI GCATC 3 cut(s) 122, 689, 737
MaeI CTAG 1 cut(s) 705
MaeIII GTNAC 1 cut(s) 539
MalI GATC 2 cut(s) 84, 393
MboI GATC 2 cut(s) 82, 391
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 209, 665
MluCI AATT 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 2 cut(s) 113, 485
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 66, 334
NdeII GATC 2 cut(s) 82, 391
NlaIII CATG 3 cut(s) 160, 248, 641
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 1 cut(s) 248
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 3 cut(s) 44, 513, 708
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 2 cut(s) 68, 509
Psp124BI GAGCTC 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 270, 302
PstI CTGCAG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 3 cut(s) 161, 214, 631
RsaNI GTAC 3 cut(s) 160, 213, 630
RseI CAYNNNNRTG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 665
SaqAI TTAA 2 cut(s) 113, 485
SatI GCNGC 2 cut(s) 67, 508
Sau3AI GATC 2 cut(s) 82, 391
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 209, 665
SetI ASST 7 cut(s) 218, 224, 271, 320, 509, 523, 665
SfaNI GCATC 3 cut(s) 122, 689, 737
SfcI CTRYAG 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 1 cut(s) 608
SspI AATATT 2 cut(s) 419, 529
SspMI CTAG 1 cut(s) 705
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 1 cut(s) 127
TaqI TCGA 1 cut(s) 561
TasI AATT 1 cut(s) 608
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 3 cut(s) 44, 513, 708
Tru1I TTAA 2 cut(s) 113, 485
Tru9I TTAA 2 cut(s) 113, 485
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 2 cut(s) 66, 507
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 4 cut(s) 17, 414, 654, 702
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 705
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.