Rh6DG082000

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000316
Physical Location & Seq
Reverse (-)
9544546 .. 9556194
11649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG082000.1

Sequence Viewer

Length: 999 bp
ATGGTGTTCCACGACCATAACAATAATAACAGGCAGCTCATGATGATCTTTGGGGAAGGCTTGTACTACTTTGCTAAGAAGTTCTTTCATGCTCATATTCAGGGACACCCATGTCAACACATACATGTATGTGCACAGATCGAGGACTCTAATGAGTTTCTTAGCTTCGTGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTATGTGCTGTATATGAACATCAAATAGAAGATCTGCTGAACATTTCTTGGTTATTAAGAAATGCGTCTCATTTTGGAATGACTAGGATGACCAAGACGTTTATAAGATGGCTGAGGAGGCTGAAAAGCTTAAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAAGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGACCTGTCTGACCTCAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTTGCAGGATGTTAGGAGTCAGTACACTGCATCTGTTGTGAGTAGTTACAAGTTAGTGGAGGACATCAGTCCATCTGCATCAGAAAATTCCACAGTTGTAACATCTAAAACTGCATCTCCAGTTTGCTGCTCATATAGTAAGAATTCTTTGTGCAAGGCGATGAAATACAAATGTCGATCCAAGGGTGGAAGCTGTGGTGACTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCAGTATCAGAAATTTCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTAAAGGTGCAATGCTACTTCAGAGTACACTAGTTCAGAAGGCTGCTGAACTAGCAGGGAACTTTGGGAACATATTGGTATACTTCATTACCTTTTCAATTTCCACTTTATATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

37.1

Weight (kDa)

6.31

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AasI GACNNNNNNGTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 960
AclWI GGATC 1 cut(s) 708
AcsI RAATTY 3 cut(s) 622, 679, 816
AcuI CTGAAG 2 cut(s) 219, 884
AfaI GTAC 3 cut(s) 65, 560, 907
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 4 cut(s) 217, 497, 843, 978
AhlI ACTAGT 1 cut(s) 910
AluBI AGCT 7 cut(s) 37, 165, 223, 351, 423, 523, 729
AluI AGCT 7 cut(s) 37, 165, 223, 351, 423, 523, 729
Alw21I GWGCWC 2 cut(s) 136, 398
Alw26I GTCTC 1 cut(s) 294
Alw44I GTGCAC 1 cut(s) 132
AlwI GGATC 1 cut(s) 708
ApaLI GTGCAC 1 cut(s) 132
ApeKI GCWGC 4 cut(s) 34, 663, 765, 923
ApoI RAATTY 3 cut(s) 622, 679, 816
AsuHPI GGTGA 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 136
Bbv12I GWGCWC 2 cut(s) 136, 398
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 46, 650, 777, 910
BccI CCATC 2 cut(s) 324, 616
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 294
BcuI ACTAGT 1 cut(s) 910
BfaI CTAG 3 cut(s) 306, 911, 932
BglII AGATCT 1 cut(s) 253
BisI GCNGC 4 cut(s) 35, 664, 766, 924
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 4 cut(s) 36, 665, 767, 925
BmsI GCATC 4 cut(s) 165, 575, 623, 659
BoxI GACNNNNGTC 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 639
Bpu10I CCTNAGC 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 446, 453
BsaJI CCNNGG 1 cut(s) 717
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bse1I ACTGG 3 cut(s) 656, 806, 849
Bse3DI GCAATG 1 cut(s) 897
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 2 cut(s) 315, 550
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 2 cut(s) 326, 510
BseNI ACTGG 3 cut(s) 656, 806, 849
BseRI GAGGAG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 4 cut(s) 46, 650, 777, 910
BsgI GTGCAG 2 cut(s) 771, 784
BsiHKAI GWGCWC 2 cut(s) 136, 398
BslFI GGGAC 2 cut(s) 117, 767
BsmAI GTCTC 1 cut(s) 294
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 2 cut(s) 117, 767
Bsp1286I GDGCHC 2 cut(s) 136, 398
Bsp143I GATC 5 cut(s) 45, 138, 253, 526, 713
Bsp1720I GCTNAGC 1 cut(s) 519
BspCNI CTCAG 2 cut(s) 327, 511
BspHI TCATGA 1 cut(s) 39
BspPI GGATC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 3 cut(s) 656, 806, 849
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 5 cut(s) 45, 138, 253, 526, 713
BssNAI GTATAC 1 cut(s) 961
BssT1I CCWWGG 1 cut(s) 717
Bst1107I GTATAC 1 cut(s) 961
Bst4CI ACNGT 2 cut(s) 631, 859
Bst6I CTCTTC 1 cut(s) 857
BstDEI CTNAG 6 cut(s) 75, 161, 335, 519, 759, 996
BstF5I GGATG 2 cut(s) 315, 550
BstKTI GATC 5 cut(s) 48, 141, 256, 529, 716
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 5 cut(s) 45, 138, 253, 526, 713
BstMWI GCNNNNNNNGC 2 cut(s) 340, 932
BstNSI RCATGY 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 4 cut(s) 46, 650, 777, 910
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 961
BtgZI GCGATG 1 cut(s) 710
BtsCI GGATG 2 cut(s) 315, 550
BtsI GCAGTG 2 cut(s) 371, 561
BtsIMutI CAGTG 4 cut(s) 371, 561, 856, 864
CciI TCATGA 1 cut(s) 39
CseI GACGC 2 cut(s) 276, 469
Csp6I GTAC 3 cut(s) 64, 559, 906
CviAII CATG 8 cut(s) 40, 89, 111, 125, 191, 399, 530, 741
CviQI GTAC 3 cut(s) 64, 559, 906
DdeI CTNAG 6 cut(s) 75, 161, 335, 519, 759, 996
DpnI GATC 5 cut(s) 47, 140, 255, 528, 715
DpnII GATC 5 cut(s) 45, 138, 253, 526, 713
DrdI GACNNNNNNGTC 1 cut(s) 111
DseDI GACNNNNNNGTC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 857
EarI CTCTTC 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 717
Eco57I CTGAAG 2 cut(s) 219, 884
EcoRI GAATTC 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 717
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 8 cut(s) 43, 92, 114, 128, 194, 402, 533, 744
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 2 cut(s) 117, 767
FatI CATG 8 cut(s) 39, 88, 110, 124, 190, 398, 529, 740
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 960
Fnu4HI GCNGC 4 cut(s) 35, 664, 766, 924
FokI GGATG 2 cut(s) 322, 557
Fsp4HI GCNGC 4 cut(s) 35, 664, 766, 924
FspBI CTAG 3 cut(s) 306, 911, 932
GluI GCNGC 4 cut(s) 35, 664, 766, 924
GsuI CTGGAG 1 cut(s) 639
HgaI GACGC 2 cut(s) 276, 469
Hin1II CATG 8 cut(s) 43, 92, 114, 128, 194, 402, 533, 744
HincII GTYRAC 2 cut(s) 116, 418
HindII GTYRAC 2 cut(s) 116, 418
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 4 cut(s) 146, 553, 737, 800
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 6 cut(s) 116, 134, 418, 561, 908, 961
Hpy188I TCNGA 6 cut(s) 457, 619, 814, 834, 903, 918
Hpy188III TCNNGA 2 cut(s) 40, 427
Hpy8I GTNNAC 6 cut(s) 116, 134, 418, 561, 908, 961
HpyAV CCTTC 3 cut(s) 50, 424, 913
HpyCH4III ACNGT 2 cut(s) 631, 859
HpyCH4IV ACGT 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 932
HpyF3I CTNAG 6 cut(s) 75, 161, 335, 519, 759, 996
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 8 cut(s) 43, 92, 114, 128, 194, 402, 533, 744
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 5 cut(s) 45, 138, 253, 526, 713
LpnPI CCDG 9 cut(s) 16, 86, 164, 464, 527, 669, 819, 862, 921
Lsp1109I GCAGC 4 cut(s) 46, 650, 777, 910
LweI GCATC 4 cut(s) 165, 575, 623, 659
MaeI CTAG 3 cut(s) 306, 911, 932
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 5 cut(s) 202, 581, 634, 734, 797
MalI GATC 5 cut(s) 47, 140, 255, 528, 715
MboI GATC 5 cut(s) 45, 138, 253, 526, 713
MboII GAAGA 2 cut(s) 263, 874
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 136, 398
MluCI AATT 6 cut(s) 183, 500, 622, 679, 816, 978
MlyI GAGTC 4 cut(s) 140, 562, 731, 794
MnlI CCTC 9 cut(s) 136, 187, 330, 333, 361, 406, 470, 589, 868
MseI TTAA 3 cut(s) 278, 353, 503
MslI CAYNNNNRTG 2 cut(s) 123, 129
MwoI GCNNNNNNNGC 2 cut(s) 340, 932
NdeII GATC 5 cut(s) 45, 138, 253, 526, 713
NlaIII CATG 8 cut(s) 43, 92, 114, 128, 194, 402, 533, 744
NmuCI GTSAC 3 cut(s) 202, 734, 797
NspI RCATGY 1 cut(s) 128
PagI TCATGA 1 cut(s) 39
PciI ACATGT 1 cut(s) 124
PkrI GCNGC 4 cut(s) 36, 665, 767, 925
PleI GAGTC 4 cut(s) 140, 561, 731, 794
PpsI GAGTC 4 cut(s) 140, 561, 731, 794
PscI ACATGT 1 cut(s) 124
PshAI GACNNNNGTC 1 cut(s) 603
PsiI TTATAA 1 cut(s) 326
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 3 cut(s) 65, 560, 907
RsaNI GTAC 3 cut(s) 64, 559, 906
RseI CAYNNNNRTG 2 cut(s) 123, 129
SaqAI TTAA 3 cut(s) 278, 353, 503
SatI GCNGC 4 cut(s) 35, 664, 766, 924
Sau3AI GATC 5 cut(s) 45, 138, 253, 526, 713
SchI GAGTC 4 cut(s) 140, 562, 731, 794
SduI GDGCHC 2 cut(s) 136, 398
SfaNI GCATC 4 cut(s) 165, 575, 623, 659
SmiMI CAYNNNNRTG 2 cut(s) 123, 129
SmlI CTYRAG 2 cut(s) 461, 468
SmoI CTYRAG 2 cut(s) 461, 468
SpeI ACTAGT 1 cut(s) 910
Sse9I AATT 6 cut(s) 183, 500, 622, 679, 816, 978
SspMI CTAG 3 cut(s) 306, 911, 932
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 2 cut(s) 631, 859
TaiI ACGT 1 cut(s) 323
TaqI TCGA 4 cut(s) 141, 426, 712, 794
TasI AATT 6 cut(s) 183, 500, 622, 679, 816, 978
TatI WGTACW 3 cut(s) 63, 558, 905
Tru1I TTAA 3 cut(s) 278, 353, 503
Tru9I TTAA 3 cut(s) 278, 353, 503
TscAI CASTG 4 cut(s) 378, 568, 856, 864
TseFI GTSAC 3 cut(s) 202, 734, 797
TseI GCWGC 4 cut(s) 34, 663, 765, 923
Tsp45I GTSAC 3 cut(s) 202, 734, 797
TspDTI ATGAA 5 cut(s) 77, 252, 375, 713, 955
TspRI CASTG 4 cut(s) 378, 568, 856, 864
VneI GTGCAC 1 cut(s) 132
XapI RAATTY 3 cut(s) 622, 679, 816
XceI RCATGY 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 960
XspI CTAG 3 cut(s) 306, 911, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.