Rh6AG098800

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000316
Physical Location & Seq
Reverse (-)
14672947 .. 14677929
4983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG098800.1

Sequence Viewer

Length: 1149 bp
ATGGACTCCGACGAACAGTACAATGTGGCCTTCGACGAAGACTTTCTTGGCTTTGGCAACGTTCGGTCAACTAGCACAGCGGCGAATTCTGATCTCGAGGGCTTGGCGACCGGCGCGTGGTCCAGGAACGACGACGAATCCGAAACAGTGAAACAGCGGAAGAGCGACATTGCCGAGATGTTGTGGGGATACGTGTCCCAACTGACGGTCGCGATTGAGGACGTGGACGCTGACGTGGCGGTCAGAGTCGAAGAGCTGGACGACATTACACGACATGTCGTTGTTTCTGGGCAAAAGCTTTCTCTATCAGTCAGGGTTGGTGCTGGTGCTTCTAGCAGGCTCTATAGGCTTCACTGGATTCCTTCGAGCCACGCCTATGAACAAGACGCACTCAGGGTTTTGCACAGAAAGACTGAAGAAGCATCTGTGCCTACTAAACAGCTGAGGCGGCGCTTAGAATCTTGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTATGTGCTGTATATGAACGTCAAATAGAAGAGATGGCTAAGGAGGCTGAAAAGCTTAAAGATGAAGTAGACGCACTGCAACAAGAAAAGTCAAGGTGCTCATTCCAGGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGAACTGTCTGACCTGAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACCAGGCTGAGCTTGATCATGGGAAGTCGCAGGACGTTAGGAGTCAGCATACTGCATCTGTTGGGAGTAGTTACAATTTACAAGCAGTCCCAATCAAGTCGAGTGACTCGCCACTATCCGAGATTTCTAATGGCGTTCTGAATAGTTCAAACACCGGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATTCTACTTCAGAGTACACCAGTTCAGAAGGCTGCTGAAACAGAAGGGAATTTTGGAGCAAGAAAGAAACCGTTGACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCACAAAAAAAGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

382

Amino Acids

42.06

Weight (kDa)

4.97

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 639
AccII CGCG 2 cut(s) 116, 212
AciI CCGC 4 cut(s) 80, 157, 239, 448
AclI AACGTT 1 cut(s) 60
AcsI RAATTY 2 cut(s) 85, 1030
AcuI CTGAAG 5 cut(s) 435, 567, 755, 974, 993
AfaI GTAC 3 cut(s) 20, 997, 1084
AfiI CCNNNNNNNGG 2 cut(s) 117, 205
AflIII ACRYGT 2 cut(s) 192, 274
AgeI ACCGGT 1 cut(s) 938
AgsI TTSAA 3 cut(s) 565, 770, 933
AjiI CACGTC 2 cut(s) 223, 235
AjnI CCWGG 4 cut(s) 122, 675, 786, 1099
AjuI GAANNNNNNNTTGG 4 cut(s) 30, 62, 1017, 1049
AluBI AGCT 9 cut(s) 256, 298, 442, 520, 571, 625, 696, 796, 1137
AluI AGCT 9 cut(s) 256, 298, 442, 520, 571, 625, 696, 796, 1137
Alw21I GWGCWC 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 2 cut(s) 27, 1102
ApeKI GCWGC 2 cut(s) 1013, 1091
ApoI RAATTY 2 cut(s) 85, 1030
AsiGI ACCGGT 1 cut(s) 938
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 116, 453
AspS9I GGNCC 2 cut(s) 120, 1103
AsuHPI GGTGA 2 cut(s) 953, 1090
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 671
BbvCI CCTCAGC 1 cut(s) 443
BbvI GCAGC 2 cut(s) 1000, 1078
BccI CCATC 1 cut(s) 598
BciT130I CCWGG 4 cut(s) 124, 677, 788, 1101
BciVI GTATCC 1 cut(s) 182
BclI TGATCA 1 cut(s) 799
BfaI CTAG 2 cut(s) 72, 333
BfmI CTRYAG 2 cut(s) 343, 1145
BfoI RGCGCY 1 cut(s) 454
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 4 cut(s) 81, 449, 1014, 1092
BlpI GCTNAGC 1 cut(s) 792
BlsI GCNGC 4 cut(s) 82, 450, 1015, 1093
Bme1390I CCNGG 4 cut(s) 124, 677, 788, 1101
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 95
BmgBI CACGTC 2 cut(s) 223, 235
BmgT120I GGNCC 2 cut(s) 120, 1103
BmrFI CCNGG 4 cut(s) 124, 677, 788, 1101
BmsI GCATC 3 cut(s) 431, 513, 848
BpiI GAAGAC 1 cut(s) 45
Bpu10I CCTNAGC 2 cut(s) 443, 609
Bpu1102I GCTNAGC 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 938
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 205
Bse118I RCCGGY 2 cut(s) 110, 938
Bse1I ACTGG 2 cut(s) 359, 1001
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 4 cut(s) 124, 677, 788, 1101
BseLI CCNNNNNNNGG 2 cut(s) 117, 205
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 4 cut(s) 406, 434, 530, 783
BseNI ACTGG 2 cut(s) 359, 1001
BseXI GCAGC 2 cut(s) 1000, 1078
Bsh1236I CGCG 2 cut(s) 116, 212
Bsh1285I CGRYCG 2 cut(s) 111, 210
BshFI GGCC 2 cut(s) 29, 1104
BshTI ACCGGT 1 cut(s) 938
BsiEI CGRYCG 2 cut(s) 111, 210
BsiHKAI GWGCWC 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 2 cut(s) 111, 939
BslFI GGGAC 2 cut(s) 181, 857
BslI CCNNNNNNNGG 2 cut(s) 117, 205
BsmFI GGGAC 2 cut(s) 181, 857
BsnI GGCC 2 cut(s) 29, 1104
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 2 cut(s) 91, 799
Bsp1720I GCTNAGC 1 cut(s) 792
Bsp68I TCGCGA 1 cut(s) 212
BspACI CCGC 4 cut(s) 80, 157, 239, 448
BspANI GGCC 2 cut(s) 29, 1104
BspCNI CTCAG 4 cut(s) 405, 435, 529, 784
BspFNI CGCG 2 cut(s) 116, 212
BspQI GCTCTTC 2 cut(s) 155, 246
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 2 cut(s) 110, 938
BsrI ACTGG 2 cut(s) 359, 1001
BssAI RCCGGY 2 cut(s) 110, 938
BssMI GATC 2 cut(s) 91, 799
Bst2UI CCWGG 4 cut(s) 124, 677, 788, 1101
Bst4CI ACNGT 7 cut(s) 18, 148, 208, 726, 949, 1053, 1146
Bst6I CTCTTC 4 cut(s) 155, 246, 594, 947
BstBAI YACGTR 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 338, 1127
BstDEI CTNAG 6 cut(s) 392, 443, 454, 516, 609, 792
BstFNI CGCG 2 cut(s) 116, 212
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 2 cut(s) 116, 453
BstKTI GATC 2 cut(s) 94, 802
BstMBI GATC 2 cut(s) 91, 799
BstMCI CGRYCG 2 cut(s) 111, 210
BstMWI GCNNNNNNNGC 5 cut(s) 113, 236, 346, 448, 614
BstNI CCWGG 4 cut(s) 124, 677, 788, 1101
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 4 cut(s) 122, 675, 786, 1099
BstSFI CTRYAG 2 cut(s) 343, 1145
BstUI CGCG 2 cut(s) 116, 212
BstV1I GCAGC 2 cut(s) 1000, 1078
BstV2I GAAGAC 1 cut(s) 45
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 2 cut(s) 29, 1104
BtrI CACGTC 2 cut(s) 223, 235
BtsI GCAGTG 1 cut(s) 644
BtsIMutI CAGTG 4 cut(s) 153, 352, 644, 954
BtuMI TCGCGA 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 338, 1127
CfoI GCGC 2 cut(s) 116, 453
Cfr10I RCCGGY 2 cut(s) 110, 938
Cfr13I GGNCC 2 cut(s) 120, 1103
CseI GACGC 4 cut(s) 236, 395, 650, 742
Csp6I GTAC 3 cut(s) 19, 996, 1083
CspAI ACCGGT 1 cut(s) 938
CviAII CATG 3 cut(s) 275, 539, 803
CviQI GTAC 3 cut(s) 19, 996, 1083
DdeI CTNAG 6 cut(s) 392, 443, 454, 516, 609, 792
DpnI GATC 2 cut(s) 93, 801
DpnII GATC 2 cut(s) 91, 799
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 4 cut(s) 155, 246, 594, 947
EarI CTCTTC 4 cut(s) 155, 246, 594, 947
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 5 cut(s) 435, 567, 755, 974, 993
Eco88I CYCGRG 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 4 cut(s) 122, 675, 786, 1099
FaeI CATG 3 cut(s) 278, 542, 806
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 2 cut(s) 181, 857
FatI CATG 3 cut(s) 274, 538, 802
FbaI TGATCA 1 cut(s) 799
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 4 cut(s) 81, 449, 1014, 1092
Fsp4HI GCNGC 4 cut(s) 81, 449, 1014, 1092
FspBI CTAG 2 cut(s) 72, 333
GlaI GCGC 2 cut(s) 115, 452
GluI GCNGC 4 cut(s) 81, 449, 1014, 1092
HaeII RGCGCY 1 cut(s) 454
HaeIII GGCC 2 cut(s) 29, 1104
HapII CCGG 2 cut(s) 111, 939
HgaI GACGC 4 cut(s) 236, 395, 650, 742
HhaI GCGC 2 cut(s) 116, 453
Hin1II CATG 3 cut(s) 278, 542, 806
Hin6I GCGC 2 cut(s) 114, 451
HinP1I GCGC 2 cut(s) 114, 451
HincII GTYRAC 3 cut(s) 69, 691, 1056
HindII GTYRAC 3 cut(s) 69, 691, 1056
HindIII AAGCTT 2 cut(s) 296, 623
HinfI GANTC 8 cut(s) 5, 137, 246, 358, 458, 826, 890, 1131
HpaII CCGG 2 cut(s) 111, 939
HphI GGTGA 2 cut(s) 953, 1090
Hpy166II GTNNAC 6 cut(s) 69, 226, 640, 691, 998, 1056
Hpy188III TCNNGA 3 cut(s) 95, 211, 700
Hpy8I GTNNAC 6 cut(s) 69, 226, 640, 691, 998, 1056
Hpy99I CGWCG 4 cut(s) 14, 38, 134, 137
HpyAV CCTTC 7 cut(s) 40, 372, 697, 730, 968, 1003, 1019
HpyCH4III ACNGT 7 cut(s) 18, 148, 208, 726, 949, 1053, 1146
HpyCH4IV ACGT 6 cut(s) 60, 192, 222, 234, 589, 819
HpyCH4V TGCA 8 cut(s) 403, 465, 526, 649, 784, 839, 980, 1094
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 236, 346, 448, 614
HpyF3I CTNAG 6 cut(s) 392, 443, 454, 516, 609, 792
HpySE526I ACGT 6 cut(s) 60, 192, 222, 234, 589, 819
Hsp92II CATG 3 cut(s) 278, 542, 806
HspAI GCGC 2 cut(s) 114, 451
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 2 cut(s) 91, 799
LguI GCTCTTC 2 cut(s) 155, 246
LmnI GCTCC 1 cut(s) 1037
Lsp1109I GCAGC 2 cut(s) 1000, 1078
LweI GCATC 3 cut(s) 431, 513, 848
MaeI CTAG 2 cut(s) 72, 333
MaeII ACGT 6 cut(s) 60, 192, 222, 234, 589, 819
MaeIII GTNAC 4 cut(s) 550, 854, 887, 1140
MalI GATC 2 cut(s) 93, 801
MboI GATC 2 cut(s) 91, 799
MboII GAAGA 6 cut(s) 50, 172, 263, 428, 611, 964
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 7 cut(s) 85, 531, 773, 859, 981, 1030, 1062
MlyI GAGTC 3 cut(s) 255, 835, 884
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 8 cut(s) 91, 211, 438, 479, 535, 607, 679, 958
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 627, 776
MslI CAYNNNNRTG 2 cut(s) 375, 1076
MspA1I CMGCKG 4 cut(s) 80, 157, 442, 520
MspI CCGG 2 cut(s) 111, 939
MspR9I CCNGG 4 cut(s) 124, 677, 788, 1101
MvaI CCWGG 4 cut(s) 124, 677, 788, 1101
MvnI CGCG 2 cut(s) 116, 212
MwoI GCNNNNNNNGC 5 cut(s) 113, 236, 346, 448, 614
NdeII GATC 2 cut(s) 91, 799
NlaIII CATG 3 cut(s) 278, 542, 806
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 550, 887
NruI TCGCGA 1 cut(s) 212
NspI RCATGY 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 95
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 2 cut(s) 155, 246
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 4 cut(s) 137, 358, 458, 1131
PfoI TCCNGGA 2 cut(s) 122, 675
PinAI ACCGGT 1 cut(s) 938
PkrI GCNGC 4 cut(s) 82, 450, 1015, 1093
PleI GAGTC 3 cut(s) 254, 834, 884
PpsI GAGTC 3 cut(s) 254, 834, 884
Ppu21I YACGTR 1 cut(s) 193
PscI ACATGT 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 4 cut(s) 122, 675, 786, 1099
PspGI CCWGG 4 cut(s) 122, 675, 786, 1099
PspPI GGNCC 2 cut(s) 120, 1103
PvuII CAGCTG 2 cut(s) 442, 520
RruI TCGCGA 1 cut(s) 212
RsaI GTAC 3 cut(s) 20, 997, 1084
RsaNI GTAC 3 cut(s) 19, 996, 1083
RseI CAYNNNNRTG 2 cut(s) 375, 1076
SapI GCTCTTC 2 cut(s) 155, 246
SaqAI TTAA 2 cut(s) 627, 776
SatI GCNGC 4 cut(s) 81, 449, 1014, 1092
Sau3AI GATC 2 cut(s) 91, 799
Sau96I GGNCC 2 cut(s) 120, 1103
SchI GAGTC 3 cut(s) 255, 835, 884
ScrFI CCNGG 4 cut(s) 124, 677, 788, 1101
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 3 cut(s) 431, 513, 848
SfcI CTRYAG 2 cut(s) 343, 1145
Sfr274I CTCGAG 1 cut(s) 95
SgrAI CRCCGGYG 1 cut(s) 938
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 95
SmiMI CAYNNNNRTG 2 cut(s) 375, 1076
SmlI CTYRAG 2 cut(s) 95, 741
SmoI CTYRAG 2 cut(s) 95, 741
Sse9I AATT 7 cut(s) 85, 531, 773, 859, 981, 1030, 1062
SsiI CCGC 4 cut(s) 80, 157, 239, 448
SspMI CTAG 2 cut(s) 72, 333
StyD4I CCNGG 4 cut(s) 122, 675, 786, 1099
TaaI ACNGT 7 cut(s) 18, 148, 208, 726, 949, 1053, 1146
TaiI ACGT 6 cut(s) 63, 195, 225, 237, 592, 822
TaqI TCGA 6 cut(s) 33, 96, 249, 365, 699, 884
TaqII GACCGA 1 cut(s) 54
TasI AATT 7 cut(s) 85, 531, 773, 859, 981, 1030, 1062
TatI WGTACW 3 cut(s) 18, 995, 1082
TauI GCSGC 2 cut(s) 83, 451
TfiI GAWTC 4 cut(s) 137, 358, 458, 1131
Tru1I TTAA 2 cut(s) 627, 776
Tru9I TTAA 2 cut(s) 627, 776
TscAI CASTG 4 cut(s) 153, 359, 651, 954
TseFI GTSAC 2 cut(s) 550, 887
TseI GCWGC 2 cut(s) 1013, 1091
Tsp45I GTSAC 2 cut(s) 550, 887
TspDTI ATGAA 3 cut(s) 393, 600, 648
TspRI CASTG 4 cut(s) 153, 359, 651, 954
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 2 cut(s) 85, 1030
XceI RCATGY 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 639
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 72, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.