Rmu_sc0002222.1_g000016

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002222.1
OG0000316
Physical Location & Seq
Forward (+)
78992 .. 79426
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002222.1_g000016.1.cds

Sequence Viewer

Length: 435 bp
atgtcagacagcgacactagtggcactggtgttacagaaattcagaagccaatgagattaagaaagggatctaagcgactagagtttataggatggggttctaaacctctcattgagtttctaagatccattgggaaggatacaactgagaagatatcccagcttgatttggacaagattatctgtaactacatcagagataaagagctttatgtgaccaaggacaagagaaaggctctatgtgatcaaagtctgcaatccattttcagaacgaaatttgtattcctggtaaggatatatggtcttctaggggaacatcttgccgagaacataacagaggatagtggaagcgaggatgaggaagaaatcaaattggaagataagaacaatggtactacgcatgaacgcaagaagagaagatcgagtgagctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

144

Amino Acids

16.61

Weight (kDa)

7.73

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 76, 120
AcsI RAATTY 2 cut(s) 39, 275
AfaI GTAC 1 cut(s) 394
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 163, 208, 430
AluI AGCT 3 cut(s) 163, 208, 430
Alw21I GWGCWC 1 cut(s) 432
AlwI GGATC 2 cut(s) 76, 120
ApoI RAATTY 2 cut(s) 39, 275
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 432
BccI CCATC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 244
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 3 cut(s) 18, 80, 308
BfuI GTATCC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 296
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BsaJI CCNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 98, 361
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 4 cut(s) 68, 125, 244, 419
BspCNI CTCAG 1 cut(s) 139
BspPI GGATC 2 cut(s) 76, 120
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 4 cut(s) 68, 125, 244, 419
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 407
BstDEI CTNAG 3 cut(s) 72, 122, 147
BstF5I GGATG 2 cut(s) 98, 361
BstKTI GATC 4 cut(s) 71, 128, 247, 422
BstMBI GATC 4 cut(s) 68, 125, 244, 419
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 2 cut(s) 68, 125
BstYI RGATCY 2 cut(s) 68, 125
BsuI GTATCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 98, 361
BtsIMutI CAGTG 1 cut(s) 24
Csp6I GTAC 1 cut(s) 393
CviAII CATG 1 cut(s) 401
CviJI RGCY 5 cut(s) 49, 163, 208, 236, 430
CviKI_1 RGCY 5 cut(s) 49, 163, 208, 236, 430
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 3 cut(s) 72, 122, 147
DpnI GATC 4 cut(s) 70, 127, 246, 421
DpnII GATC 4 cut(s) 68, 125, 244, 419
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 432
Eco32I GATATC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 404
FaiI YATR 7 cut(s) 89, 213, 241, 298, 300, 332, 402
FatI CATG 1 cut(s) 400
FbaI TGATCA 1 cut(s) 244
FokI GGATG 2 cut(s) 105, 368
FriOI GRGCYC 1 cut(s) 432
FspBI CTAG 3 cut(s) 18, 80, 308
GsaI CCCAGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 404
Hpy188I TCNGA 5 cut(s) 7, 45, 197, 269, 434
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 256
HpyF3I CTNAG 3 cut(s) 72, 122, 147
Hsp92II CATG 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 68, 125, 244, 419
LpnPI CCDG 4 cut(s) 12, 173, 272, 299
MaeI CTAG 3 cut(s) 18, 80, 308
MaeIII GTNAC 3 cut(s) 31, 185, 214
MalI GATC 4 cut(s) 70, 127, 246, 421
MboI GATC 4 cut(s) 68, 125, 244, 419
MboII GAAGA 6 cut(s) 163, 296, 374, 389, 424, 429
MflI RGATCY 2 cut(s) 68, 125
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 3 cut(s) 39, 275, 371
MnlI CCTC 4 cut(s) 117, 331, 346, 352
MseI TTAA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
NdeII GATC 4 cut(s) 68, 125, 244, 419
NlaIII CATG 1 cut(s) 404
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 285
PsuI RGATCY 2 cut(s) 68, 125
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 4 cut(s) 68, 125, 244, 419
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 432
SetI ASST 4 cut(s) 109, 165, 210, 432
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 3 cut(s) 39, 275, 371
SspMI CTAG 3 cut(s) 18, 80, 308
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 1 cut(s) 422
TasI AATT 3 cut(s) 39, 275, 371
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 1 cut(s) 31
XapI RAATTY 2 cut(s) 39, 275
XspI CTAG 3 cut(s) 18, 80, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.