MD08G1198100.v1.1

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000316
Physical Location & Seq
Forward (+)
25667464 .. 25672146
4683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1198100.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGAAGAAAGGCAACCGCCGCGTACAGCGAACCGCCGACGCATCCACCGGCGATGATTACGGGAAGAAATTTCACCAATTGGACCTTGAAAATAAAGCATATCAGAAGGAGGTTGAGGAGCTGAGATTCAAGGTAGCAAATGGTTCATCCACTTCCTGTGATAGCAGTGCTCAAAAGCTGAGAGAGGATTACATTCAAAAGTTGACTTTCCTTGAGGATCAGGTTGCAGTGTTGACGAAGAAGCTAGATGCTCAATCTCAGCTCTCGGTTCTAAGAAGAAGGGGCGATGAGCCCACAAAGCAGTTACATTTCGAGATTCAGAGGTTGAAGGCTCAGAAGGTTCAAGTGCAATGTAAGATGAAGCTTGAGTCTGTGCAGTTCAGATTGCAAAAGGCTTCCCTGGAAAAAGAAGTTCTTCAGGAAGCTGCAAACCTGAAGGATGAAGCTGAGGCGCAGCAGCAAGAAATGTCGAGGTGCACATGCCAGGAACAAGAGGATGACTGCTTGGAGAAGGATTTAGGTATAAAAGATCTGAAGGAACAATTCGTTAGTCTAAGTAGTATGGTTGGACAACTAAGGCTGAACAAGGCTGCGCTTGATGGTGGGAATAAGTCACAGGGAACTATGAGCCAACATTCTATTTCTGTTGGGAGTAATAGTTACAAGTTAGTGGAGGACATCACCCCATCTGCCTCAGAAATCTCGAACGTTGCAAAAGTTAAAACTGCATCAACAGTGTGCTGCTCATGCAGTAAGAGTTCCTTGTGCAAGACGATGAAATGCAGATGTCGATCCACGGGTGGCAGCTGTGGGGCATCATGTGGCTGTGTTGCCTCTAAGTGCAGCAATAGAGGATTAACAGTTCAAATTAAGTTGAATGAGTCGTCACAGTCAGAGACGGTTGATGGCATTTTGAACTGTTCAGATACAACTGAAGTGGAGAAGGATAGCTCAGTGGCTTCTCAAGGTGCAATGCTACTTCAGAATGCTTTAGTTCAGAAGCCTGCAGAGTCGAATGACAATCTTGGGCCAAGAAAGAAACCATTATCTGATATTGGGAACCTACTGGTGAATGCAGACGCTGCAAAACCCGCCCCAAATAAAAAGGGACGAAAGCCAGCAATTCGACTTGTTAATGTAAATGCTGAAGGCAAAAAAGGAGCAGAGGATGCAATGCAAGCAGAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

43.15

Weight (kDa)

8.66

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 15 - 140 9.8e-25 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 4 cut(s) 16, 19, 33, 1092
AclI AACGTT 1 cut(s) 708
AclWI GGATC 2 cut(s) 225, 786
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 6 cut(s) 401, 455, 554, 954, 965, 1167
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 8 cut(s) 89, 130, 197, 328, 344, 866, 877, 916
AjnI CCWGG 2 cut(s) 399, 483
AloI GAACNNNNNNTCC 2 cut(s) 846, 878
AluBI AGCT 9 cut(s) 121, 178, 244, 262, 364, 425, 446, 807, 951
AluI AGCT 9 cut(s) 121, 178, 244, 262, 364, 425, 446, 807, 951
Alw21I GWGCWC 2 cut(s) 172, 479
Alw26I GTCTC 1 cut(s) 890
Alw44I GTGCAC 1 cut(s) 475
AlwI GGATC 2 cut(s) 225, 786
AlwNI CAGNNNCTG 1 cut(s) 1082
AoxI GGCC 1 cut(s) 1028
ApaLI GTGCAC 1 cut(s) 475
ApeKI GCWGC 8 cut(s) 425, 454, 457, 590, 741, 804, 843, 1082
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 414
AspLEI GCGC 2 cut(s) 454, 595
AspS9I GGNCC 2 cut(s) 82, 1028
AsuHPI GGTGA 3 cut(s) 65, 673, 1081
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 172, 479
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 8 cut(s) 412, 466, 469, 577, 728, 816, 855, 1069
BccI CCATC 3 cut(s) 593, 694, 899
BciT130I CCWGG 2 cut(s) 401, 485
BcoDI GTCTC 1 cut(s) 890
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 1005
BglII AGATCT 1 cut(s) 529
BisI GCNGC 9 cut(s) 19, 426, 455, 458, 591, 742, 805, 844, 1083
BlsI GCNGC 9 cut(s) 20, 427, 456, 459, 592, 743, 806, 845, 1084
Bme1390I CCNGG 2 cut(s) 401, 485
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 82, 1028
BmiI GGNNCC 1 cut(s) 1061
BmrFI CCNGG 2 cut(s) 401, 485
BmsI GCATC 5 cut(s) 50, 238, 737, 824, 1159
Bpu10I CCTNAGC 1 cut(s) 447
BpuEI CTTGAG 3 cut(s) 233, 386, 948
BsaBI GATNNNNATC 1 cut(s) 790
BsaJI CCNNGG 2 cut(s) 399, 795
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 1071
Bse3DI GCAATG 3 cut(s) 356, 978, 1179
Bse8I GATNNNNATC 1 cut(s) 790
BseBI CCWGG 2 cut(s) 401, 485
BseDI CCNNGG 2 cut(s) 399, 795
BseGI GGATG 5 cut(s) 41, 146, 445, 502, 1174
BseJI GATNNNNATC 1 cut(s) 790
BseMI GCAATG 3 cut(s) 356, 978, 1179
BseMII CTCAG 7 cut(s) 113, 170, 272, 347, 438, 708, 966
BseNI ACTGG 1 cut(s) 1071
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 8 cut(s) 412, 466, 469, 577, 728, 816, 855, 1069
BsgI GTGCAG 2 cut(s) 395, 862
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 1030
BsiHKAI GWGCWC 2 cut(s) 172, 479
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 1122
BsmAI GTCTC 1 cut(s) 890
BsmBI CGTCTC 1 cut(s) 890
BsmFI GGGAC 1 cut(s) 1122
BsmI GAATGC 2 cut(s) 991, 1078
BsnI GGCC 1 cut(s) 1030
Bsp1286I GDGCHC 3 cut(s) 172, 294, 479
Bsp143I GATC 3 cut(s) 217, 529, 791
BspACI CCGC 4 cut(s) 16, 19, 33, 1092
BspANI GGCC 1 cut(s) 1030
BspCNI CTCAG 7 cut(s) 114, 171, 271, 346, 439, 707, 965
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 1061
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 2 cut(s) 225, 786
BsrDI GCAATG 3 cut(s) 356, 978, 1179
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 399, 795
BssMI GATC 3 cut(s) 217, 529, 791
Bst2UI CCWGG 2 cut(s) 401, 485
Bst4CI ACNGT 5 cut(s) 736, 862, 891, 901, 920
BstAPI GCANNNNNTGC 2 cut(s) 1082, 1169
BstC8I GCNNGC 3 cut(s) 1005, 1119, 1179
BstDSI CCRYGG 1 cut(s) 795
BstF5I GGATG 5 cut(s) 41, 146, 445, 502, 1174
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 2 cut(s) 454, 595
BstKTI GATC 3 cut(s) 220, 532, 794
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 3 cut(s) 217, 529, 791
BstMWI GCNNNNNNNGC 7 cut(s) 18, 298, 747, 1082, 1091, 1169, 1178
BstNI CCWGG 2 cut(s) 401, 485
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 399, 483
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 8 cut(s) 412, 466, 469, 577, 728, 816, 855, 1069
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 1 cut(s) 1030
BtgI CCRYGG 1 cut(s) 795
BtgZI GCGATG 2 cut(s) 66, 300
BtsCI GGATG 5 cut(s) 41, 146, 445, 502, 1174
BtsI GCAGTG 2 cut(s) 172, 234
BtsIMutI CAGTG 4 cut(s) 172, 234, 741, 960
Cac8I GCNNGC 3 cut(s) 1005, 1119, 1179
CaiI CAGNNNCTG 1 cut(s) 1082
CfoI GCGC 2 cut(s) 454, 595
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 82, 1028
CseI GACGC 2 cut(s) 47, 1088
Csp6I GTAC 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 918, 953
CviAII CATG 3 cut(s) 480, 747, 819
CviQI GTAC 1 cut(s) 23
DpnI GATC 3 cut(s) 219, 531, 793
DpnII GATC 3 cut(s) 217, 529, 791
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 6 cut(s) 401, 455, 554, 954, 965, 1167
EcoRII CCWGG 2 cut(s) 399, 483
EcoT38I GRGCYC 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 890
FaeI CATG 3 cut(s) 483, 750, 822
FaiI YATR 7 cut(s) 100, 481, 524, 563, 626, 748, 820
FalI AAGNNNNNCTT 4 cut(s) 399, 431, 746, 778
FaqI GGGAC 1 cut(s) 1122
FatI CATG 3 cut(s) 479, 746, 818
FauI CCCGC 1 cut(s) 1099
Fnu4HI GCNGC 9 cut(s) 19, 426, 455, 458, 591, 742, 805, 844, 1083
FokI GGATG 5 cut(s) 28, 133, 452, 509, 1181
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 9 cut(s) 19, 426, 455, 458, 591, 742, 805, 844, 1083
FspBI CTAG 1 cut(s) 245
GlaI GCGC 2 cut(s) 453, 594
GluI GCNGC 9 cut(s) 19, 426, 455, 458, 591, 742, 805, 844, 1083
HaeIII GGCC 1 cut(s) 1030
HapII CCGG 1 cut(s) 48
HgaI GACGC 2 cut(s) 47, 1088
HhaI GCGC 2 cut(s) 454, 595
Hin1II CATG 3 cut(s) 483, 750, 822
Hin6I GCGC 2 cut(s) 452, 593
HinP1I GCGC 2 cut(s) 452, 593
HincII GTYRAC 2 cut(s) 204, 234
HindII GTYRAC 2 cut(s) 204, 234
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 5 cut(s) 126, 316, 368, 881, 1010
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 65, 673, 1081
Hpy166II GTNNAC 3 cut(s) 204, 234, 477
Hpy188III TCNNGA 3 cut(s) 313, 419, 703
Hpy8I GTNNAC 3 cut(s) 204, 234, 477
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 5 cut(s) 736, 862, 891, 901, 920
HpyCH4IV ACGT 1 cut(s) 708
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 298, 747, 1082, 1091, 1169, 1178
HpySE526I ACGT 1 cut(s) 708
Hsp92II CATG 3 cut(s) 483, 750, 822
HspAI GCGC 2 cut(s) 452, 593
Kzo9I GATC 3 cut(s) 217, 529, 791
LmnI GCTCC 2 cut(s) 118, 1160
Lsp1109I GCAGC 8 cut(s) 412, 466, 469, 577, 728, 816, 855, 1069
LweI GCATC 5 cut(s) 50, 238, 737, 824, 1159
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 708
MaeIII GTNAC 4 cut(s) 303, 612, 659, 885
MalI GATC 3 cut(s) 219, 531, 793
MboI GATC 3 cut(s) 217, 529, 791
MboII GAAGA 5 cut(s) 16, 76, 250, 288, 407
MfeI CAATTG 1 cut(s) 77
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 3 cut(s) 172, 294, 479
MluCI AATT 5 cut(s) 68, 77, 542, 867, 1122
MlyI GAGTC 3 cut(s) 377, 890, 1019
MmeI TCCRAC 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 5 cut(s) 720, 857, 870, 1134, 1189
MspA1I CMGCKG 1 cut(s) 807
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 401, 485
MunI CAATTG 1 cut(s) 77
Mva1269I GAATGC 2 cut(s) 991, 1078
MvaI CCWGG 2 cut(s) 401, 485
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 7 cut(s) 18, 298, 747, 1082, 1091, 1169, 1178
NdeII GATC 3 cut(s) 217, 529, 791
NlaIII CATG 3 cut(s) 483, 750, 822
NlaIV GGNNCC 1 cut(s) 1061
NmuCI GTSAC 2 cut(s) 612, 885
NspI RCATGY 1 cut(s) 483
PctI GAATGC 2 cut(s) 991, 1078
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 2 cut(s) 126, 316
PkrI GCNGC 9 cut(s) 20, 427, 456, 459, 592, 743, 806, 845, 1084
PleI GAGTC 3 cut(s) 376, 889, 1018
PpsI GAGTC 3 cut(s) 376, 889, 1018
Psp1406I AACGTT 1 cut(s) 708
Psp6I CCWGG 2 cut(s) 399, 483
PspGI CCWGG 2 cut(s) 399, 483
PspN4I GGNNCC 1 cut(s) 1061
PspPI GGNCC 2 cut(s) 82, 1028
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 807
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 5 cut(s) 720, 857, 870, 1134, 1189
SatI GCNGC 9 cut(s) 19, 426, 455, 458, 591, 742, 805, 844, 1083
Sau3AI GATC 3 cut(s) 217, 529, 791
Sau96I GGNCC 2 cut(s) 82, 1028
SchI GAGTC 3 cut(s) 377, 890, 1019
ScrFI CCNGG 2 cut(s) 401, 485
SduI GDGCHC 3 cut(s) 172, 294, 479
SfaNI GCATC 5 cut(s) 50, 238, 737, 824, 1159
SfcI CTRYAG 1 cut(s) 1005
SgrAI CRCCGGYG 1 cut(s) 47
SinI GGWCC 1 cut(s) 82
SmlI CTYRAG 3 cut(s) 212, 365, 963
SmoI CTYRAG 3 cut(s) 212, 365, 963
Sse9I AATT 5 cut(s) 68, 77, 542, 867, 1122
SsiI CCGC 4 cut(s) 16, 19, 33, 1092
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 399, 483
TaaI ACNGT 5 cut(s) 736, 862, 891, 901, 920
TaiI ACGT 1 cut(s) 711
TaqI TCGA 6 cut(s) 312, 470, 704, 790, 1013, 1126
TasI AATT 5 cut(s) 68, 77, 542, 867, 1122
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 126, 316
Tru1I TTAA 5 cut(s) 720, 857, 870, 1134, 1189
Tru9I TTAA 5 cut(s) 720, 857, 870, 1134, 1189
TscAI CASTG 4 cut(s) 172, 234, 741, 960
TseFI GTSAC 2 cut(s) 612, 885
TseI GCWGC 8 cut(s) 425, 454, 457, 590, 741, 804, 843, 1082
Tsp45I GTSAC 2 cut(s) 612, 885
TspDTI ATGAA 5 cut(s) 17, 135, 374, 456, 791
TspRI CASTG 4 cut(s) 172, 234, 741, 960
VneI GTGCAC 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.