pycom08g17040

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000316
Physical Location & Seq
Forward (+)
17224076 .. 17225306
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17040.3

Sequence Viewer

Length: 765 bp
ATGTATTTTGCTTCTGTACCTTGCCCTTTTTCCCCTGCCATCTTAAGGTGCACATGCCAGGAGCAAGAGGATGACTGCTTGGAGAAGGATTTAGGTATAAAAGATCTGAAGGAACAATTCGTTAGTCTAAGTAGTATGGTTGGACAACTAAGGTTGAACAAGGCTGCACTTGATGTTGGGAATAAGTCACAGGGAACTATGAACCAACGTTCTATTTCTGTTGGGAGTAATAGTTACAAGTTAGTGGAGGACATCACCCCATCTGCCTCAGAAAACTCGAACGTTGTAAAAGTTAAAACTGCATCAACAGTGTGCTGCTCATGCAGTAAGAGTTCCTTGTGCAAGACGATGAAATGCAGATGTCGATCCACTGGTGGCACCTGTGGGGCATCATGTGGCTGTGTTGCCTCTAAGTGTAGCAATAGAGGATTGACAGTTCAAATTAAGTTGAATGAGTCGTCACAATCAGAGACGGTTGATAGCATTTTGAACTGTTCAGATACAACTGAAGTGGAGACGGATAGCTCAGTGGCTTATCAAGGTGCAATGCTACTTCAGAATGCTTTAGTTCAGAAGCCTGCAGAGCCGAATGACAATCTTGGGCCAAGAAAGAAACCATTATCTGATATTGGGAACCTACTGGTGAATGCAGACGCTGCAAAACCCGCCCCAAATAAAAAGGGACGAAAGCCAGCAATTCGACTTGTTAATGTAAATGCTGAAGGCAAAAATGGAGCAGAGGATGCAATGCAAGCAGAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

26.9

Weight (kDa)

8.12

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 1 cut(s) 666
AclI AACGTT 2 cut(s) 208, 282
AclWI GGATC 1 cut(s) 360
AcuI CTGAAG 4 cut(s) 128, 528, 539, 741
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 45
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 4 cut(s) 157, 440, 451, 490
AjnI CCWGG 1 cut(s) 57
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 1 cut(s) 525
AluI AGCT 1 cut(s) 525
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 464, 509
Alw44I GTGCAC 1 cut(s) 49
AlwI GGATC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 1 cut(s) 602
ApaLI GTGCAC 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 164, 315, 656
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 2 cut(s) 247, 655
BaeGI GKGCMC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 3 cut(s) 151, 302, 643
BccI CCATC 2 cut(s) 47, 268
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 464, 509
BfmI CTRYAG 1 cut(s) 579
BfrI CTTAAG 1 cut(s) 43
BglII AGATCT 1 cut(s) 103
BisI GCNGC 3 cut(s) 165, 316, 657
BlsI GCNGC 3 cut(s) 166, 317, 658
Bme1390I CCNGG 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 2 cut(s) 379, 635
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 3 cut(s) 311, 398, 733
BsaBI GATNNNNATC 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 376, 645
Bse3DI GCAATG 2 cut(s) 552, 753
Bse8I GATNNNNATC 1 cut(s) 364
BseBI CCWGG 1 cut(s) 59
BseGI GGATG 2 cut(s) 76, 748
BseJI GATNNNNATC 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMI GCAATG 2 cut(s) 552, 753
BseMII CTCAG 2 cut(s) 282, 540
BseNI ACTGG 2 cut(s) 376, 645
BseSI GKGCMC 1 cut(s) 53
BseXI GCAGC 3 cut(s) 151, 302, 643
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 1 cut(s) 604
BshNI GGYRCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 464, 509
BsmBI CGTCTC 2 cut(s) 464, 509
BsmFI GGGAC 1 cut(s) 696
BsmI GAATGC 2 cut(s) 565, 652
BsnI GGCC 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 103, 365
BspACI CCGC 1 cut(s) 666
BspANI GGCC 1 cut(s) 604
BspCNI CTCAG 2 cut(s) 281, 539
BspLI GGNNCC 2 cut(s) 379, 635
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 43
BsrDI GCAATG 2 cut(s) 552, 753
BsrI ACTGG 2 cut(s) 376, 645
BssMI GATC 2 cut(s) 103, 365
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 4 cut(s) 310, 436, 475, 494
BstAFI CTTAAG 1 cut(s) 43
BstAPI GCANNNNNTGC 2 cut(s) 656, 743
BstC8I GCNNGC 3 cut(s) 579, 693, 753
BstDEI CTNAG 5 cut(s) 128, 149, 268, 411, 526
BstF5I GGATG 2 cut(s) 76, 748
BstKTI GATC 2 cut(s) 106, 368
BstMAI GTCTC 2 cut(s) 464, 509
BstMBI GATC 2 cut(s) 103, 365
BstMWI GCNNNNNNNGC 6 cut(s) 321, 583, 656, 665, 743, 752
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 151, 302, 643
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 604
BtsCI GGATG 2 cut(s) 76, 748
BtsIMutI CAGTG 3 cut(s) 315, 369, 534
Cac8I GCNNGC 3 cut(s) 579, 693, 753
CaiI CAGNNNCTG 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 662
Csp6I GTAC 1 cut(s) 17
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 3 cut(s) 54, 321, 393
CviJI RGCY 8 cut(s) 164, 399, 525, 533, 577, 586, 604, 691
CviKI_1 RGCY 8 cut(s) 164, 399, 525, 533, 577, 586, 604, 691
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 5 cut(s) 128, 149, 268, 411, 526
DpnI GATC 2 cut(s) 105, 367
DpnII GATC 2 cut(s) 103, 365
Eco57I CTGAAG 4 cut(s) 128, 528, 539, 741
EcoRII CCWGG 1 cut(s) 57
Esp3I CGTCTC 2 cut(s) 464, 509
FaeI CATG 3 cut(s) 57, 324, 396
FaiI YATR 6 cut(s) 55, 98, 137, 200, 322, 394
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 696
FatI CATG 3 cut(s) 53, 320, 392
FauI CCCGC 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 165, 316, 657
FokI GGATG 2 cut(s) 83, 755
Fsp4HI GCNGC 3 cut(s) 165, 316, 657
GluI GCNGC 3 cut(s) 165, 316, 657
HaeIII GGCC 1 cut(s) 604
HgaI GACGC 1 cut(s) 662
Hin1II CATG 3 cut(s) 57, 324, 396
HinfI GANTC 1 cut(s) 455
HphI GGTGA 2 cut(s) 247, 655
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 7 cut(s) 108, 271, 469, 499, 558, 573, 625
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 4 cut(s) 79, 103, 716, 752
HpyCH4III ACNGT 4 cut(s) 310, 436, 475, 494
HpyCH4IV ACGT 2 cut(s) 208, 282
HpyF10VI GCNNNNNNNGC 6 cut(s) 321, 583, 656, 665, 743, 752
HpyF3I CTNAG 5 cut(s) 128, 149, 268, 411, 526
HpySE526I ACGT 2 cut(s) 208, 282
Hsp92II CATG 3 cut(s) 57, 324, 396
Kzo9I GATC 2 cut(s) 103, 365
LmnI GCTCC 2 cut(s) 61, 734
LpnPI CCDG 9 cut(s) 44, 48, 71, 176, 357, 394, 591, 626, 705
Lsp1109I GCAGC 3 cut(s) 151, 302, 643
LweI GCATC 3 cut(s) 311, 398, 733
MaeII ACGT 2 cut(s) 208, 282
MaeIII GTNAC 3 cut(s) 186, 233, 459
MalI GATC 2 cut(s) 105, 367
MboI GATC 2 cut(s) 103, 365
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 3 cut(s) 116, 441, 696
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 6 cut(s) 61, 241, 277, 418, 419, 733
MseI TTAA 5 cut(s) 44, 294, 444, 708, 763
MspCI CTTAAG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 2 cut(s) 565, 652
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 6 cut(s) 321, 583, 656, 665, 743, 752
NdeII GATC 2 cut(s) 103, 365
NlaIII CATG 3 cut(s) 57, 324, 396
NlaIV GGNNCC 2 cut(s) 379, 635
NmuCI GTSAC 2 cut(s) 186, 459
NspI RCATGY 1 cut(s) 57
PctI GAATGC 2 cut(s) 565, 652
PkrI GCNGC 3 cut(s) 166, 317, 658
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Psp1406I AACGTT 2 cut(s) 208, 282
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 379, 635
PspPI GGNCC 1 cut(s) 602
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 5 cut(s) 44, 294, 444, 708, 763
SatI GCNGC 3 cut(s) 165, 316, 657
Sau3AI GATC 2 cut(s) 103, 365
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 3 cut(s) 311, 398, 733
SfcI CTRYAG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 3 cut(s) 116, 441, 696
SsiI CCGC 1 cut(s) 666
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 310, 436, 475, 494
TaiI ACGT 2 cut(s) 211, 285
TaqI TCGA 3 cut(s) 278, 364, 700
TasI AATT 3 cut(s) 116, 441, 696
Tru1I TTAA 5 cut(s) 44, 294, 444, 708, 763
Tru9I TTAA 5 cut(s) 44, 294, 444, 708, 763
TscAI CASTG 3 cut(s) 315, 376, 534
TseFI GTSAC 2 cut(s) 186, 459
TseI GCWGC 3 cut(s) 164, 315, 656
Tsp45I GTSAC 2 cut(s) 186, 459
TspDTI ATGAA 2 cut(s) 215, 365
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 3 cut(s) 315, 376, 534
Vha464I CTTAAG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 49
XceI RCATGY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.