Rh6AG098900

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000316
Physical Location & Seq
Reverse (-)
14711344 .. 14727988
16645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG098900.1

Sequence Viewer

Length: 1125 bp
ATGGAGCACCGTAGAGAACTAGAGATACTAGAGACCAGCTCGAGGGAGAGGGTCGAGATTGAGCCGGTCTCAAATCTTGATTTTGAAGTTATAAAAAAGGCTATTGCATCTGGTAATTTACTGTTACTATCCCTACGCACTCAGGGTTCAAATTCAAACGCAATGGAAGATGGAACTAGAATCTGGGCAAGCAACTTCTTCAGGTTTTGCACAGAAAGACTGAAGAAGCATCTGTGCCTACTAAACAGAGGTGGCAAAAATGTGAATAATACAGCAACTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTATGTGCTGTATATGAACATCAAATAGAAGATCTGCTGAACATTTCTTGGTTATTAAGAAATGCGTCTCATTTTGGAATGACTAGGATGACCAAGACGTTTATAAGATGGCTGAGGAGGCTGAAAAGCTTAAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAAGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGACCTGTCTGACCTCAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTTGCAGGATGTTAGGAGTCAGTACACTGCATCTGTTGTGAGTAGTTACAAGTTAGTGGAGGACATCAGTCCATCTGCATCAGAAAATTCCACAGTTGTAACATCTAAAACTGCATCTCCAGTTTGCTGCTCATATAGTAAGAATTCTTTGTGCAAGGCGATGAAATACAAATGTCGATCCAAGGGTGGAAGCTGTGGTGACTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCAGTATCAGAAATTTCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTAAAGGTGCAATGCTACTTCAGAGTACACTAGTTCAGAAGGCTGCTGAACTAGCAGGGAACTTTGGGAACATATTGATGGAAGATAGCATGCTGAACATTCGATCGAGCAGCTGCAGACAGAGATGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

41.75

Weight (kDa)

7.49

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 92, 437
AclWI GGATC 1 cut(s) 819
AcsI RAATTY 4 cut(s) 151, 733, 790, 927
AcuI CTGAAG 4 cut(s) 184, 242, 330, 995
AfaI GTAC 2 cut(s) 671, 1018
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 6 cut(s) 86, 150, 156, 328, 608, 954
AhlI ACTAGT 1 cut(s) 1021
AluBI AGCT 8 cut(s) 39, 283, 334, 462, 534, 634, 840, 1104
AluI AGCT 8 cut(s) 39, 283, 334, 462, 534, 634, 840, 1104
Alw21I GWGCWC 2 cut(s) 9, 509
Alw26I GTCTC 3 cut(s) 26, 73, 405
AlwI GGATC 1 cut(s) 819
Ama87I CYCGRG 1 cut(s) 40
ApeKI GCWGC 5 cut(s) 774, 876, 1034, 1101, 1104
ApoI RAATTY 4 cut(s) 151, 733, 790, 927
AsuHPI GGTGA 1 cut(s) 857
AvaI CYCGRG 1 cut(s) 40
Bbv12I GWGCWC 2 cut(s) 9, 509
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 5 cut(s) 761, 888, 1021, 1091, 1113
BccI CCATC 5 cut(s) 164, 435, 727, 1063, 1110
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 3 cut(s) 26, 73, 405
BcuI ACTAGT 1 cut(s) 1021
BfaI CTAG 6 cut(s) 20, 29, 177, 417, 1022, 1043
BfmI CTRYAG 1 cut(s) 1105
BglII AGATCT 1 cut(s) 364
BisI GCNGC 5 cut(s) 775, 877, 1035, 1102, 1105
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 5 cut(s) 776, 878, 1036, 1103, 1106
BmeT110I CYCGRG 1 cut(s) 40
BmsI GCATC 6 cut(s) 116, 238, 276, 686, 734, 770
BoxI GACNNNNGTC 1 cut(s) 714
BplI GAGNNNNNCTC 4 cut(s) 23, 55, 53, 85
BpmI CTGGAG 1 cut(s) 750
Bpu10I CCTNAGC 1 cut(s) 446
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 557, 564
BsaI GGTCTC 2 cut(s) 26, 73
BsaJI CCNNGG 1 cut(s) 828
BsaXI ACNNNNNCTCC 2 cut(s) 748, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 3 cut(s) 767, 917, 960
Bse3DI GCAATG 2 cut(s) 168, 1008
BseDI CCNNGG 1 cut(s) 828
BseGI GGATG 2 cut(s) 426, 661
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 2 cut(s) 168, 1008
BseMII CTCAG 4 cut(s) 155, 293, 437, 621
BseNI ACTGG 3 cut(s) 767, 917, 960
BseRI GAGGAG 1 cut(s) 463
BseXI GCAGC 5 cut(s) 761, 888, 1021, 1091, 1113
BsgI GTGCAG 2 cut(s) 882, 895
Bsh1285I CGRYCG 1 cut(s) 1097
BsiEI CGRYCG 1 cut(s) 1097
BsiHKAI GWGCWC 2 cut(s) 9, 509
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 3 cut(s) 26, 73, 405
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 878
Bso31I GGTCTC 2 cut(s) 26, 73
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 9, 509
Bsp143I GATC 4 cut(s) 364, 637, 824, 1094
Bsp1720I GCTNAGC 1 cut(s) 630
BspCNI CTCAG 4 cut(s) 154, 292, 438, 622
BspMAI CTGCAG 1 cut(s) 1109
BspPI GGATC 1 cut(s) 819
BspTNI GGTCTC 2 cut(s) 26, 73
BsrDI GCAATG 2 cut(s) 168, 1008
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 3 cut(s) 767, 917, 960
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 828
BssMI GATC 4 cut(s) 364, 637, 824, 1094
BssT1I CCWWGG 1 cut(s) 828
Bst4CI ACNGT 4 cut(s) 11, 123, 742, 970
Bst6I CTCTTC 1 cut(s) 968
BstC8I GCNNGC 2 cut(s) 190, 1082
BstDEI CTNAG 5 cut(s) 141, 279, 446, 630, 870
BstF5I GGATG 2 cut(s) 426, 661
BstKTI GATC 4 cut(s) 367, 640, 827, 1097
BstMAI GTCTC 3 cut(s) 26, 73, 405
BstMBI GATC 4 cut(s) 364, 637, 824, 1094
BstMCI CGRYCG 1 cut(s) 1097
BstMWI GCNNNNNNNGC 2 cut(s) 451, 1043
BstNSI RCATGY 1 cut(s) 1084
BstPAI GACNNNNGTC 1 cut(s) 714
BstSFI CTRYAG 1 cut(s) 1105
BstV1I GCAGC 5 cut(s) 761, 888, 1021, 1091, 1113
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 821
BtsCI GGATG 2 cut(s) 426, 661
BtsI GCAGTG 2 cut(s) 482, 672
BtsIMutI CAGTG 4 cut(s) 482, 672, 967, 975
Cac8I GCNNGC 2 cut(s) 190, 1082
Cfr10I RCCGGY 1 cut(s) 64
CseI GACGC 2 cut(s) 387, 580
Csp6I GTAC 2 cut(s) 670, 1017
CviAII CATG 5 cut(s) 302, 510, 641, 852, 1081
CviQI GTAC 2 cut(s) 670, 1017
DdeI CTNAG 5 cut(s) 141, 279, 446, 630, 870
DpnI GATC 4 cut(s) 366, 639, 826, 1096
DpnII GATC 4 cut(s) 364, 637, 824, 1094
Eam1104I CTCTTC 1 cut(s) 968
EarI CTCTTC 1 cut(s) 968
Eco130I CCWWGG 1 cut(s) 828
Eco31I GGTCTC 2 cut(s) 26, 73
Eco57I CTGAAG 4 cut(s) 184, 242, 330, 995
Eco88I CYCGRG 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 828
ErhI CCWWGG 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 5 cut(s) 305, 513, 644, 855, 1084
FaqI GGGAC 1 cut(s) 878
FatI CATG 5 cut(s) 301, 509, 640, 851, 1080
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 5 cut(s) 775, 877, 1035, 1102, 1105
FokI GGATG 2 cut(s) 433, 668
Fsp4HI GCNGC 5 cut(s) 775, 877, 1035, 1102, 1105
FspBI CTAG 6 cut(s) 20, 29, 177, 417, 1022, 1043
GluI GCNGC 5 cut(s) 775, 877, 1035, 1102, 1105
GsuI CTGGAG 1 cut(s) 750
HapII CCGG 1 cut(s) 65
HgaI GACGC 2 cut(s) 387, 580
Hin1II CATG 5 cut(s) 305, 513, 644, 855, 1084
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 4 cut(s) 180, 664, 848, 911
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 857
Hpy166II GTNNAC 3 cut(s) 529, 672, 1019
Hpy188I TCNGA 6 cut(s) 568, 730, 925, 945, 1014, 1029
Hpy188III TCNNGA 3 cut(s) 55, 77, 538
Hpy8I GTNNAC 3 cut(s) 529, 672, 1019
HpyAV CCTTC 2 cut(s) 535, 1024
HpyCH4III ACNGT 4 cut(s) 11, 123, 742, 970
HpyCH4IV ACGT 1 cut(s) 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 1043
HpyF3I CTNAG 5 cut(s) 141, 279, 446, 630, 870
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 5 cut(s) 305, 513, 644, 855, 1084
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 4 cut(s) 364, 637, 824, 1094
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 5 cut(s) 761, 888, 1021, 1091, 1113
LweI GCATC 6 cut(s) 116, 238, 276, 686, 734, 770
MaeI CTAG 6 cut(s) 20, 29, 177, 417, 1022, 1043
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 6 cut(s) 123, 313, 692, 745, 845, 908
MalI GATC 4 cut(s) 366, 639, 826, 1096
MboI GATC 4 cut(s) 364, 637, 824, 1094
MboII GAAGA 6 cut(s) 179, 190, 235, 374, 985, 1085
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 9, 509
MluCI AATT 7 cut(s) 115, 151, 294, 611, 733, 790, 927
MlyI GAGTC 3 cut(s) 673, 842, 905
MseI TTAA 3 cut(s) 389, 464, 614
MslI CAYNNNNRTG 1 cut(s) 1067
MspA1I CMGCKG 2 cut(s) 283, 1104
MspI CCGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 451, 1043
NdeII GATC 4 cut(s) 364, 637, 824, 1094
NlaIII CATG 5 cut(s) 305, 513, 644, 855, 1084
NmuCI GTSAC 3 cut(s) 313, 845, 908
NspI RCATGY 1 cut(s) 1084
PaeI GCATGC 1 cut(s) 1084
PaeR7I CTCGAG 1 cut(s) 40
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 5 cut(s) 776, 878, 1036, 1103, 1106
Ple19I CGATCG 1 cut(s) 1097
PleI GAGTC 3 cut(s) 672, 842, 905
PpsI GAGTC 3 cut(s) 672, 842, 905
PshAI GACNNNNGTC 1 cut(s) 714
PsiI TTATAA 2 cut(s) 92, 437
PspXI VCTCGAGB 1 cut(s) 40
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstI CTGCAG 1 cut(s) 1109
PsuI RGATCY 1 cut(s) 364
PvuI CGATCG 1 cut(s) 1097
PvuII CAGCTG 2 cut(s) 283, 1104
RsaI GTAC 2 cut(s) 671, 1018
RsaNI GTAC 2 cut(s) 670, 1017
RseI CAYNNNNRTG 1 cut(s) 1067
SaqAI TTAA 3 cut(s) 389, 464, 614
SatI GCNGC 5 cut(s) 775, 877, 1035, 1102, 1105
Sau3AI GATC 4 cut(s) 364, 637, 824, 1094
SchI GAGTC 3 cut(s) 673, 842, 905
SduI GDGCHC 2 cut(s) 9, 509
SfaNI GCATC 6 cut(s) 116, 238, 276, 686, 734, 770
SfcI CTRYAG 1 cut(s) 1105
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 1067
SmlI CTYRAG 3 cut(s) 40, 572, 579
SmoI CTYRAG 3 cut(s) 40, 572, 579
SpeI ACTAGT 1 cut(s) 1021
SphI GCATGC 1 cut(s) 1084
Sse9I AATT 7 cut(s) 115, 151, 294, 611, 733, 790, 927
SspMI CTAG 6 cut(s) 20, 29, 177, 417, 1022, 1043
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 4 cut(s) 11, 123, 742, 970
TaiI ACGT 1 cut(s) 434
TaqI TCGA 7 cut(s) 41, 54, 537, 823, 905, 1093, 1097
TasI AATT 7 cut(s) 115, 151, 294, 611, 733, 790, 927
TatI WGTACW 2 cut(s) 669, 1016
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 3 cut(s) 389, 464, 614
Tru9I TTAA 3 cut(s) 389, 464, 614
TscAI CASTG 4 cut(s) 489, 679, 967, 975
TseFI GTSAC 3 cut(s) 313, 845, 908
TseI GCWGC 5 cut(s) 774, 876, 1034, 1101, 1104
Tsp45I GTSAC 3 cut(s) 313, 845, 908
TspDTI ATGAA 3 cut(s) 363, 486, 824
TspRI CASTG 4 cut(s) 489, 679, 967, 975
XapI RAATTY 4 cut(s) 151, 733, 790, 927
XceI RCATGY 1 cut(s) 1084
XhoI CTCGAG 1 cut(s) 40
XspI CTAG 6 cut(s) 20, 29, 177, 417, 1022, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.