FvH4_5g35240

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000316
Physical Location & Seq
Reverse (-)
25790597 .. 25796155
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35240.t5

Sequence Viewer

Length: 1506 bp
ATGAAGAGGGGCAACCGCCGCTCCAAGCAGACCGCCGACGCTTCCCCCGCCGCCTCCGCCGCCGCCGAAGATACAGAGAAGCGAGTTCGCGAACTCGAAATTCAAAACCAAGCCTTCCAGAAGGAGGTTGAGGAGCTGAGATGCAAGCTTGCAAATGCTTCATCTACTAGTGGTGTTGACAACAGTGCTCAGAAGCTCAGAGAAAATTACCTTCAGAAGTTGACTTTCCTCGAAGATCAGGTGGCGGTGTTGACGAGGAAGCTAGATGCTCAATCTCAACTCTCAACCCAAAGAAGAAGAGGGGACGAGTCTGCAAAGCCTTTCCAGTTTGAGATTCAGAGATTGAAGGCTCAGAAGGTTCAAATGCAATGTAAGATGAAACTAGAATCTGTGCAGTTCAGATTGCACAAAGCTTTGCTGGACAAGGAAGTTCTTCAGCTCAAGAAAGAGAGTAGGAGGAATAAACATGAGATGCAAAAGCTATTGGCCTCCAATCAAAGACTGAAGACGGTTTTACATCGAAAGACTGAAGAAGCATCTTTGGCTACTAAACAGCTGAGACGGCTCTTAGAATCTCGCAAGGCTCTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATGCAGCAACTGAGCTGGTGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTTTGTGGTGTATATGAACGTCAAATAGAAGAGATGGCTGAGGAGGCTGCAAAGCTTCAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCGAGGTGCTCATGCCAAGAGAAAGAGGTTGACAGCTTCGAGAACGATTTAGATATAACAGACCTGAAGGCTCAAGTAGTCGGCCTCAGTAGCATGGTTGAAAAATTAAGGTTGAACAAGGCAGAGCTTGATTATGCGAAGCCTAAGGACGTTAGGAATCAGCATACTGCATCTGTTGGGAGTAGTACTTACAAGTCGGCGGAGGACATTAGTCCTTCTGCATCAGAAAATTCCACAGTTGAAACAACTAAAGCTGCATCTCCAGTTTGCTGCTCATGCACTAAGAGTTCTTTGTGCAAGACAATGAAATGCAAATGTCGATCCAAGGGTGGGAGCTGTGGGGCCTCATGTGGCTGCGCAGCGTCTAAGTGCAGCAATAGGATAGCAGTCCCGATCAAGTCGAGTGACTCGCCACTATCAGAGATTGCTAATGGCGTTCTGAATAGTTCAAACAGCAGTGAAACGGTGAAGAGTAACACAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTTCAGAAGCCTGCTGAACCGAAAGAGAACTTTGGAGCAAGAAAGAAACCCTTAACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCCAAACCGGCCCCAAGAAAAAGGGGAAGAAATCCAGCGATTCAACTAGTTACTGTAGACCCAAATTCCTCAATGCCAGTAAATGTGGAAGGCGTGAAGGAAGCAGAAGGACATGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

502

Amino Acids

55.22

Weight (kDa)

8.97

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 19 - 150 3.3e-26 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1132
AccBSI CCGCTC 1 cut(s) 21
AccI GTMKAC 1 cut(s) 1440
AccII CGCG 1 cut(s) 90
AclWI GGATC 1 cut(s) 1089
AcsI RAATTY 3 cut(s) 99, 1003, 1447
AcuI CTGAAG 8 cut(s) 197, 419, 524, 549, 681, 860, 1265, 1284
AfaI GTAC 2 cut(s) 961, 1375
AfiI CCNNNNNNNGG 2 cut(s) 124, 1104
AhlI ACTAGT 3 cut(s) 167, 1291, 1429
Alw21I GWGCWC 3 cut(s) 190, 785, 1291
Alw26I GTCTC 1 cut(s) 553
Alw44I GTGCAC 1 cut(s) 1287
AlwI GGATC 1 cut(s) 1089
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 4 cut(s) 486, 856, 1116, 1392
ApaLI GTGCAC 1 cut(s) 1287
ApeKI GCWGC 8 cut(s) 623, 731, 1028, 1044, 1128, 1133, 1146, 1382
ApoI RAATTY 3 cut(s) 99, 1003, 1447
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 1133
AspS9I GGNCC 2 cut(s) 1116, 1393
AsuHPI GGTGA 2 cut(s) 1252, 1381
AxyI CCTNAGG 1 cut(s) 918
BaeGI GKGCMC 1 cut(s) 1291
BbsI GAAGAC 1 cut(s) 512
Bbv12I GWGCWC 3 cut(s) 190, 785, 1291
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 8 cut(s) 635, 718, 1015, 1031, 1115, 1145, 1158, 1369
BccI CCATC 1 cut(s) 712
BceAI ACGGC 1 cut(s) 578
BcoDI GTCTC 1 cut(s) 553
BcuI ACTAGT 3 cut(s) 167, 1291, 1429
BfaI CTAG 5 cut(s) 168, 263, 383, 1292, 1430
BfmI CTRYAG 1 cut(s) 1437
BglI GCCNNNNNGGC 1 cut(s) 1391
BmcAI AGTACT 1 cut(s) 961
BmgT120I GGNCC 2 cut(s) 1116, 1393
BmiI GGNNCC 2 cut(s) 1117, 1395
BmsI GCATC 7 cut(s) 131, 256, 462, 545, 953, 1004, 1040
BoxI GACNNNNGTC 1 cut(s) 984
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 2 cut(s) 425, 831
BsaJI CCNNGG 1 cut(s) 1098
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 1104
Bse118I RCCGGY 1 cut(s) 1390
Bse1I ACTGG 3 cut(s) 325, 1037, 1460
Bse21I CCTNAGG 1 cut(s) 918
Bse3DI GCAATG 2 cut(s) 374, 1278
BseDI CCNNGG 1 cut(s) 1098
BseLI CCNNNNNNNGG 2 cut(s) 124, 1104
BseMI GCAATG 2 cut(s) 374, 1278
BseMII CTCAG 8 cut(s) 128, 203, 211, 365, 548, 621, 714, 874
BseNI ACTGG 3 cut(s) 325, 1037, 1460
BseRI GAGGAG 2 cut(s) 146, 740
BseSI GKGCMC 1 cut(s) 1291
BseXI GCAGC 8 cut(s) 635, 718, 1015, 1031, 1115, 1145, 1158, 1369
BsgI GTGCAG 3 cut(s) 413, 659, 1165
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 488, 858, 1118, 1394
BsiHKAI GWGCWC 3 cut(s) 190, 785, 1291
BsiSI CCGG 1 cut(s) 1391
BslFI GGGAC 2 cut(s) 317, 1148
BslI CCNNNNNNNGG 2 cut(s) 124, 1104
BsmAI GTCTC 1 cut(s) 553
BsmBI CGTCTC 1 cut(s) 553
BsmFI GGGAC 2 cut(s) 317, 1148
BsnI GGCC 4 cut(s) 488, 858, 1118, 1394
Bsp1286I GDGCHC 3 cut(s) 190, 785, 1291
Bsp143I GATC 3 cut(s) 235, 1094, 1167
Bsp68I TCGCGA 1 cut(s) 90
BspANI GGCC 4 cut(s) 488, 858, 1118, 1394
BspCNI CTCAG 8 cut(s) 129, 202, 210, 364, 549, 622, 715, 873
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 1117, 1395
BspPI GGATC 1 cut(s) 1089
BsrBI CCGCTC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 374, 1278
BsrFI RCCGGY 1 cut(s) 1390
BsrI ACTGG 3 cut(s) 325, 1037, 1460
BssAI RCCGGY 1 cut(s) 1390
BssECI CCNNGG 1 cut(s) 1098
BssMI GATC 3 cut(s) 235, 1094, 1167
BssT1I CCWWGG 1 cut(s) 1098
Bst4CI ACNGT 5 cut(s) 185, 511, 1012, 1240, 1438
Bst6I CTCTTC 3 cut(s) 292, 708, 1238
BstC8I GCNNGC 3 cut(s) 146, 150, 1305
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 1133
BstKTI GATC 3 cut(s) 238, 1097, 1170
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 3 cut(s) 235, 1094, 1167
BstPAI GACNNNNGTC 1 cut(s) 984
BstSFI CTRYAG 1 cut(s) 1437
BstSLI GKGCMC 1 cut(s) 1291
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 8 cut(s) 635, 718, 1015, 1031, 1115, 1145, 1158, 1369
BstV2I GAAGAC 1 cut(s) 512
Bsu36I CCTNAGG 1 cut(s) 918
BsuRI GGCC 4 cut(s) 488, 858, 1118, 1394
BtsI GCAGTG 2 cut(s) 758, 1237
BtsIMutI CAGTG 3 cut(s) 190, 758, 1237
BtuMI TCGCGA 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 146, 150, 1305
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 1 cut(s) 1133
Cfr10I RCCGGY 1 cut(s) 1390
Cfr13I GGNCC 2 cut(s) 1116, 1393
CseI GACGC 2 cut(s) 47, 1125
Csp6I GTAC 2 cut(s) 960, 1374
CviAII CATG 7 cut(s) 467, 653, 786, 868, 1050, 1122, 1496
CviQI GTAC 2 cut(s) 960, 1374
DpnI GATC 3 cut(s) 237, 1096, 1169
DpnII GATC 3 cut(s) 235, 1094, 1167
Eam1104I CTCTTC 3 cut(s) 292, 708, 1238
EarI CTCTTC 3 cut(s) 292, 708, 1238
EciI GGCGGA 2 cut(s) 46, 989
Eco130I CCWWGG 1 cut(s) 1098
Eco57I CTGAAG 8 cut(s) 197, 419, 524, 549, 681, 860, 1265, 1284
Eco81I CCTNAGG 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 1116
EcoT14I CCWWGG 1 cut(s) 1098
ErhI CCWWGG 1 cut(s) 1098
Esp3I CGTCTC 1 cut(s) 553
FaeI CATG 7 cut(s) 470, 656, 789, 871, 1053, 1125, 1499
FalI AAGNNNNNCTT 2 cut(s) 1328, 1360
FaqI GGGAC 2 cut(s) 317, 1148
FatI CATG 7 cut(s) 466, 652, 785, 867, 1049, 1121, 1495
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 1 cut(s) 1440
FspBI CTAG 5 cut(s) 168, 263, 383, 1292, 1430
FspI TGCGCA 1 cut(s) 1132
GlaI GCGC 1 cut(s) 1132
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 4 cut(s) 488, 858, 1118, 1394
HapII CCGG 1 cut(s) 1391
HgaI GACGC 2 cut(s) 47, 1125
HhaI GCGC 1 cut(s) 1133
Hin1II CATG 7 cut(s) 470, 656, 789, 871, 1053, 1125, 1499
Hin6I GCGC 1 cut(s) 1131
HinP1I GCGC 1 cut(s) 1131
HincII GTYRAC 4 cut(s) 178, 222, 252, 805
HindII GTYRAC 4 cut(s) 178, 222, 252, 805
HindIII AAGCTT 3 cut(s) 146, 411, 737
HinfI GANTC 7 cut(s) 308, 334, 386, 572, 931, 1181, 1423
HpaII CCGG 1 cut(s) 1391
HphI GGTGA 2 cut(s) 1252, 1381
Hpy166II GTNNAC 6 cut(s) 178, 222, 252, 805, 1289, 1441
Hpy188III TCNNGA 6 cut(s) 89, 118, 442, 743, 814, 1165
Hpy8I GTNNAC 6 cut(s) 178, 222, 252, 805, 1289, 1441
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 5 cut(s) 185, 511, 1012, 1240, 1438
HpyCH4IV ACGT 2 cut(s) 703, 924
HpySE526I ACGT 2 cut(s) 703, 924
Hsp92II CATG 7 cut(s) 470, 656, 789, 871, 1053, 1125, 1499
HspAI GCGC 1 cut(s) 1131
Kzo9I GATC 3 cut(s) 235, 1094, 1167
LmnI GCTCC 4 cut(s) 26, 133, 1107, 1328
Lsp1109I GCAGC 8 cut(s) 635, 718, 1015, 1031, 1115, 1145, 1158, 1369
LweI GCATC 7 cut(s) 131, 256, 462, 545, 953, 1004, 1040
MaeI CTAG 5 cut(s) 168, 263, 383, 1292, 1430
MaeII ACGT 2 cut(s) 703, 924
MaeIII GTNAC 4 cut(s) 664, 1178, 1247, 1432
MalI GATC 3 cut(s) 237, 1096, 1169
MbiI CCGCTC 1 cut(s) 21
MboI GATC 3 cut(s) 235, 1094, 1167
MhlI GDGCHC 3 cut(s) 190, 785, 1291
MluCI AATT 7 cut(s) 99, 205, 645, 878, 1003, 1353, 1447
MlyI GAGTC 2 cut(s) 317, 1175
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 2 cut(s) 881, 1346
MslI CAYNNNNRTG 1 cut(s) 1367
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 1 cut(s) 1391
MvnI CGCG 1 cut(s) 90
NdeII GATC 3 cut(s) 235, 1094, 1167
NlaIII CATG 7 cut(s) 470, 656, 789, 871, 1053, 1125, 1499
NlaIV GGNNCC 2 cut(s) 1117, 1395
NmuCI GTSAC 2 cut(s) 664, 1178
NruI TCGCGA 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 5 cut(s) 334, 386, 572, 931, 1423
PleI GAGTC 2 cut(s) 316, 1175
PpsI GAGTC 2 cut(s) 316, 1175
PshAI GACNNNNGTC 1 cut(s) 984
PspN4I GGNNCC 2 cut(s) 1117, 1395
PspPI GGNCC 2 cut(s) 1116, 1393
PstNI CAGNNNCTG 1 cut(s) 629
PvuII CAGCTG 1 cut(s) 556
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 2 cut(s) 961, 1375
RsaNI GTAC 2 cut(s) 960, 1374
RseI CAYNNNNRTG 1 cut(s) 1367
SaqAI TTAA 2 cut(s) 881, 1346
Sau3AI GATC 3 cut(s) 235, 1094, 1167
Sau96I GGNCC 2 cut(s) 1116, 1393
ScaI AGTACT 1 cut(s) 961
SchI GAGTC 2 cut(s) 317, 1175
SduI GDGCHC 3 cut(s) 190, 785, 1291
SfaNI GCATC 7 cut(s) 131, 256, 462, 545, 953, 1004, 1040
SfcI CTRYAG 1 cut(s) 1437
SmiMI CAYNNNNRTG 1 cut(s) 1367
SmlI CTYRAG 2 cut(s) 440, 846
SmoI CTYRAG 2 cut(s) 440, 846
SpeI ACTAGT 3 cut(s) 167, 1291, 1429
Sse9I AATT 7 cut(s) 99, 205, 645, 878, 1003, 1353, 1447
SspMI CTAG 5 cut(s) 168, 263, 383, 1292, 1430
StyI CCWWGG 1 cut(s) 1098
TaaI ACNGT 5 cut(s) 185, 511, 1012, 1240, 1438
TaiI ACGT 2 cut(s) 706, 927
TaqI TCGA 7 cut(s) 96, 231, 520, 776, 813, 1093, 1175
TasI AATT 7 cut(s) 99, 205, 645, 878, 1003, 1353, 1447
TatI WGTACW 2 cut(s) 959, 1373
TauI GCSGC 4 cut(s) 21, 53, 62, 65
TfiI GAWTC 5 cut(s) 334, 386, 572, 931, 1423
Tru1I TTAA 2 cut(s) 881, 1346
Tru9I TTAA 2 cut(s) 881, 1346
TscAI CASTG 3 cut(s) 190, 765, 1237
TseFI GTSAC 2 cut(s) 664, 1178
TseI GCWGC 8 cut(s) 623, 731, 1028, 1044, 1128, 1133, 1146, 1382
Tsp45I GTSAC 2 cut(s) 664, 1178
TspDTI ATGAA 6 cut(s) 17, 150, 392, 714, 762, 1094
TspRI CASTG 3 cut(s) 190, 765, 1237
VneI GTGCAC 1 cut(s) 1287
XapI RAATTY 3 cut(s) 99, 1003, 1447
XmiI GTMKAC 1 cut(s) 1440
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 5 cut(s) 168, 263, 383, 1292, 1430
ZrmI AGTACT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.