Rh7CG469300

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000316
Physical Location & Seq
Forward (+)
62864818 .. 62887709
22892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG469300.1

Sequence Viewer

Length: 1173 bp
ATGTGTAGGAAAAGAAGCTCTTCTTCAGCTTCAGAAGAAAGTAAAGTTCCATATATTGCAAAATCTGGATTTACATCGGCATGGTTGCCGCCATCAACTCATTCATTTGCCCCGGAAGGTTACCTCCTTCAGAACATATATTCCCTCAATTCTAAATATGGATCTGAGCGCCAATTAAGAGGTTTACTAAAAAAAATTGGGTTACCTCCCTCGGAACATATATTCCACCGAATTGGGTTTATTTATTTACAGCTTACTCTGTTTTGTGTTTCTGAATATTCAATTAGTTATGCAGCTAAATATGTGAAGGAGCAAAACCAATTTTTTCCGCTGGGGAGTATTGGGATTCTTGCAACTACAATGGTCATGGTTTGGACTACAACCAAGGTGGCAAAAATGGGAATAATACAGCAACTCAGTTCACGACTTCCACTTCCTATGAGTCATGGGATTTCATACTGTTCTGGGCTCAAACACATTAATAGAAATCTTTTATTAAGGCTGGTGCAGGAAATTGACCATGAGGTTGAAGTCACAGAGCAGTTGAATGACCTATGTGCTATTTATGAACTTCAAATAGAAGAGATGGTGGAGGAGGCTGAAAAGCTTAAAGACGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGCTTTGAGAAGGATTTAGATATAACAGACCTGAAGGCTCAAGTAGTCAGCCTCAGTGGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCACAGGACGTTAGGAGTCAGCATACTGGATCTGTTGGGAGCAGTTACAAGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGCGTCCAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAAGTCGAGTGACTCGCCACTATCAGAGATTGCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTTCAGAAGCCTGCTGAACCGGAAGGGAACTTTGGAGCAATAAAGAAACCCTTAACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCAAGAAAAAAGGGGAGAAAGCCAGCGATTCAGCTTGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

42.95

Weight (kDa)

7.64

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 847
AciI CCGC 2 cut(s) 89, 329
AclWI GGATC 2 cut(s) 169, 820
AcuI CTGAAG 6 cut(s) 9, 15, 113, 728, 998, 1017
AfaI GTAC 1 cut(s) 1108
AgsI TTSAA 6 cut(s) 282, 530, 547, 575, 743, 957
AhlI ACTAGT 1 cut(s) 1024
AjnI CCWGG 2 cut(s) 657, 1123
AjuI GAANNNNNNNTTGG 2 cut(s) 1041, 1073
AloI GAACNNNNNNTCC 4 cut(s) 125, 157, 207, 239
AluBI AGCT 9 cut(s) 18, 29, 253, 296, 607, 678, 769, 842, 1162
AluI AGCT 9 cut(s) 18, 29, 253, 296, 607, 678, 769, 842, 1162
Alw21I GWGCWC 2 cut(s) 653, 1024
Alw44I GTGCAC 1 cut(s) 1020
AlwI GGATC 2 cut(s) 169, 820
AoxI GGCC 1 cut(s) 1126
ApaLI GTGCAC 1 cut(s) 1020
ApeKI GCWGC 4 cut(s) 293, 865, 878, 1115
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 19
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 1127
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 1114
BaeGI GKGCMC 1 cut(s) 1024
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 2 cut(s) 653, 1024
BbvI GCAGC 4 cut(s) 305, 877, 890, 1102
BccI CCATC 2 cut(s) 100, 580
BciT130I CCWGG 2 cut(s) 659, 1125
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 1 cut(s) 113
BcuI ACTAGT 1 cut(s) 1024
BfaI CTAG 1 cut(s) 1025
BfmI CTRYAG 1 cut(s) 1169
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 5 cut(s) 89, 294, 866, 879, 1116
BlpI GCTNAGC 1 cut(s) 765
BlsI GCNGC 5 cut(s) 90, 295, 867, 880, 1117
Bme1390I CCNGG 3 cut(s) 113, 659, 1125
BmgT120I GGNCC 1 cut(s) 1127
BmiI GGNNCC 1 cut(s) 849
BmrFI CCNGG 3 cut(s) 113, 659, 1125
Bpu1102I GCTNAGC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 699
BpuMI CCSGG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 111, 210, 384
BsaWI WCCGGW 1 cut(s) 1045
Bse1I ACTGG 2 cut(s) 814, 963
Bse3DI GCAATG 1 cut(s) 1011
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 2 cut(s) 659, 1125
BseDI CCNNGG 3 cut(s) 111, 210, 384
BseJI GATNNNNATC 1 cut(s) 73
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 4 cut(s) 156, 430, 742, 756
BseNI ACTGG 2 cut(s) 814, 963
BseRI GAGGAG 1 cut(s) 608
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 4 cut(s) 305, 877, 890, 1102
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 3 cut(s) 527, 884, 897
BshFI GGCC 1 cut(s) 1128
BshNI GGYRCC 1 cut(s) 847
BsiHKAI GWGCWC 2 cut(s) 653, 1024
BsiSI CCGG 2 cut(s) 113, 1046
BslFI GGGAC 1 cut(s) 880
BsmFI GGGAC 1 cut(s) 880
BsnI GGCC 1 cut(s) 1128
Bsp1286I GDGCHC 3 cut(s) 471, 653, 1024
Bsp143I GATC 3 cut(s) 161, 772, 812
Bsp1720I GCTNAGC 1 cut(s) 765
BspACI CCGC 2 cut(s) 89, 329
BspANI GGCC 1 cut(s) 1128
BspCNI CTCAG 4 cut(s) 157, 429, 741, 757
BspLI GGNNCC 1 cut(s) 849
BspPI GGATC 2 cut(s) 169, 820
BspQI GCTCTTC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 847
BsrDI GCAATG 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 814, 963
BssECI CCNNGG 3 cut(s) 111, 210, 384
BssMI GATC 3 cut(s) 161, 772, 812
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 659, 1125
Bst4CI ACNGT 2 cut(s) 461, 973
Bst6I CTCTTC 3 cut(s) 25, 576, 971
BstC8I GCNNGC 2 cut(s) 1038, 1152
BstDEI CTNAG 4 cut(s) 165, 416, 728, 765
BstEII GGTNACC 2 cut(s) 119, 201
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 164, 775, 815
BstMBI GATC 3 cut(s) 161, 772, 812
BstNI CCWGG 2 cut(s) 659, 1125
BstPI GGTNACC 2 cut(s) 119, 201
BstSCI CCNGG 3 cut(s) 111, 657, 1123
BstSFI CTRYAG 1 cut(s) 1169
BstSLI GKGCMC 1 cut(s) 1024
BstV1I GCAGC 4 cut(s) 305, 877, 890, 1102
BstX2I RGATCY 2 cut(s) 161, 812
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 2 cut(s) 161, 812
BsuRI GGCC 1 cut(s) 1128
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 4 cut(s) 626, 736, 970, 978
Cac8I GCNNGC 2 cut(s) 1038, 1152
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 1127
CseI GACGC 1 cut(s) 857
Csp6I GTAC 1 cut(s) 1107
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 7 cut(s) 81, 367, 446, 521, 654, 776, 854
CviQI GTAC 1 cut(s) 1107
DdeI CTNAG 4 cut(s) 165, 416, 728, 765
DpnI GATC 3 cut(s) 163, 774, 814
DpnII GATC 3 cut(s) 161, 772, 812
Eam1104I CTCTTC 3 cut(s) 25, 576, 971
EarI CTCTTC 3 cut(s) 25, 576, 971
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 471
Eco57I CTGAAG 6 cut(s) 9, 15, 113, 728, 998, 1017
Eco91I GGTNACC 2 cut(s) 119, 201
EcoO65I GGTNACC 2 cut(s) 119, 201
EcoRII CCWGG 2 cut(s) 657, 1123
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 7 cut(s) 84, 370, 449, 524, 657, 779, 857
FalI AAGNNNNNCTT 5 cut(s) 36, 7, 39, 1061, 1093
FaqI GGGAC 1 cut(s) 880
FatI CATG 7 cut(s) 80, 366, 445, 520, 653, 775, 853
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 5 cut(s) 89, 294, 866, 879, 1116
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 5 cut(s) 89, 294, 866, 879, 1116
FspBI CTAG 1 cut(s) 1025
GlaI GCGC 1 cut(s) 170
GluI GCNGC 5 cut(s) 89, 294, 866, 879, 1116
GsaI CCCAGC 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 1128
HapII CCGG 2 cut(s) 113, 1046
HgaI GACGC 1 cut(s) 857
HhaI GCGC 1 cut(s) 171
Hin1II CATG 7 cut(s) 84, 370, 449, 524, 657, 779, 857
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 5 cut(s) 346, 442, 799, 914, 1156
HpaII CCGG 2 cut(s) 113, 1046
HphI GGTGA 1 cut(s) 1114
Hpy166II GTNNAC 4 cut(s) 185, 422, 673, 1022
Hpy188III TCNNGA 2 cut(s) 66, 423
Hpy8I GTNNAC 4 cut(s) 185, 422, 673, 1022
HpyAV CCTTC 7 cut(s) 110, 137, 301, 679, 703, 992, 1043
HpyCH4III ACNGT 2 cut(s) 461, 973
HpyCH4IV ACGT 1 cut(s) 792
HpyF3I CTNAG 4 cut(s) 165, 416, 728, 765
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 7 cut(s) 84, 370, 449, 524, 657, 779, 857
HspAI GCGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 3 cut(s) 161, 772, 812
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 3 cut(s) 310, 822, 1061
Lsp1109I GCAGC 4 cut(s) 305, 877, 890, 1102
MaeI CTAG 1 cut(s) 1025
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 6 cut(s) 119, 201, 532, 783, 827, 911
MalI GATC 3 cut(s) 163, 774, 814
MboI GATC 3 cut(s) 161, 772, 812
MboII GAAGA 5 cut(s) 12, 15, 47, 593, 988
MflI RGATCY 2 cut(s) 161, 812
MhlI GDGCHC 3 cut(s) 471, 653, 1024
MluCI AATT 9 cut(s) 148, 173, 195, 231, 282, 320, 513, 746, 1086
MlyI GAGTC 3 cut(s) 451, 808, 908
MroXI GAANNNNTTC 1 cut(s) 19
MseI TTAA 6 cut(s) 176, 480, 497, 609, 749, 1079
MslI CAYNNNNRTG 2 cut(s) 79, 1100
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 2 cut(s) 113, 1046
MspR9I CCNGG 3 cut(s) 113, 659, 1125
MvaI CCWGG 2 cut(s) 659, 1125
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 161, 772, 812
NlaIII CATG 7 cut(s) 84, 370, 449, 524, 657, 779, 857
NlaIV GGNNCC 1 cut(s) 849
NmuCI GTSAC 3 cut(s) 532, 783, 911
PciSI GCTCTTC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 346, 1156
PkrI GCNGC 5 cut(s) 90, 295, 867, 880, 1117
PleI GAGTC 3 cut(s) 450, 807, 908
PpsI GAGTC 3 cut(s) 450, 807, 908
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 657, 1123
PspEI GGTNACC 2 cut(s) 119, 201
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 2 cut(s) 657, 1123
PspN4I GGNNCC 1 cut(s) 849
PspPI GGNCC 1 cut(s) 1127
PsuI RGATCY 2 cut(s) 161, 812
RsaI GTAC 1 cut(s) 1108
RsaNI GTAC 1 cut(s) 1107
RseI CAYNNNNRTG 2 cut(s) 79, 1100
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 6 cut(s) 176, 480, 497, 609, 749, 1079
SatI GCNGC 5 cut(s) 89, 294, 866, 879, 1116
Sau3AI GATC 3 cut(s) 161, 772, 812
Sau96I GGNCC 1 cut(s) 1127
SchI GAGTC 3 cut(s) 451, 808, 908
ScrFI CCNGG 3 cut(s) 113, 659, 1125
SduI GDGCHC 3 cut(s) 471, 653, 1024
SfcI CTRYAG 1 cut(s) 1169
SmiMI CAYNNNNRTG 2 cut(s) 79, 1100
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
SpeI ACTAGT 1 cut(s) 1024
Sse9I AATT 9 cut(s) 148, 173, 195, 231, 282, 320, 513, 746, 1086
SsiI CCGC 2 cut(s) 89, 329
SspI AATATT 1 cut(s) 278
SspMI CTAG 1 cut(s) 1025
StyD4I CCNGG 3 cut(s) 111, 657, 1123
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 461, 973
TaiI ACGT 1 cut(s) 795
TaqI TCGA 1 cut(s) 908
TasI AATT 9 cut(s) 148, 173, 195, 231, 282, 320, 513, 746, 1086
TatI WGTACW 1 cut(s) 1106
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 2 cut(s) 346, 1156
Tru1I TTAA 6 cut(s) 176, 480, 497, 609, 749, 1079
Tru9I TTAA 6 cut(s) 176, 480, 497, 609, 749, 1079
TscAI CASTG 4 cut(s) 633, 736, 970, 978
TseFI GTSAC 3 cut(s) 532, 783, 911
TseI GCWGC 4 cut(s) 293, 865, 878, 1115
Tsp45I GTSAC 3 cut(s) 532, 783, 911
TspDTI ATGAA 3 cut(s) 93, 444, 582
TspRI CASTG 4 cut(s) 633, 736, 970, 978
VneI GTGCAC 1 cut(s) 1020
VspI ATTAAT 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.