Rmu_sc0012681.1_g000001

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012681.1
OG0000316
Physical Location & Seq
Forward (+)
1 .. 2806
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012681.1_g000001.1.cds

Sequence Viewer

Length: 764 bp
gatggctgaggaggctgaaaagcttaaaagatgaagtagaggcactgcaacaagaaaagtcaaggtgtttatgccaagagaaagaggttgacagcttcgagaaggatttagatataacagacctgtctgacctcaaggctcaagtagtcagcgtcagtagtatggttgaacaattaagattgcacaaggctgagcttgatcatgggaagttgcaggatgttaggagtcagtacactgcatctgttacgagtagttacaagttagtggaggacatcagtccatctgcatcagaaaattccacagttgtaacatctaaaactgcatctccagtttgctgctcatatagtaagaattctttgtgcaatgcgatgaaatacaaatgtcgatccaagggtggaaactgtggtgactcatgtggctgtgcagtatctaagtgcagcaataggaaagcagtcccaatcaagtcgagtgactcaccagtatcagagatttctaatggcgttctgaatagttcaaacaccagtgaaacagtgaagagtagcatagaggcttctaaaggtgcaatgctacttcagagtacactagttcagaaggctgctgaactagcagggaactttgggaacatattggtgagtacaaatgctgcaaaacctggcccacaaaaaagggagatagcccgcgattcagcttgttactgtagacccaatttcctcaatgccagtaaatatggaagcctaaaggaagcagaaggaaatgacagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.34

Weight (kDa)

8.54

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 699
AccII CGCG 1 cut(s) 680
AciI CCGC 1 cut(s) 678
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 294, 351
AcuI CTGAAG 1 cut(s) 556
AfaI GTAC 3 cut(s) 232, 579, 636
AgsI TTSAA 2 cut(s) 169, 515
AhlI ACTAGT 1 cut(s) 582
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 4 cut(s) 23, 95, 195, 688
AluI AGCT 4 cut(s) 23, 95, 195, 688
AlwI GGATC 1 cut(s) 380
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 4 cut(s) 335, 437, 595, 643
ApoI RAATTY 2 cut(s) 294, 351
AspS9I GGNCC 1 cut(s) 655
AsuHPI GGTGA 3 cut(s) 418, 467, 642
BbvCI CCTCAGC 1 cut(s) 7
BbvI GCAGC 4 cut(s) 322, 449, 582, 630
BccI CCATC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 653
BclI TGATCA 1 cut(s) 198
BcuI ACTAGT 1 cut(s) 582
BfaI CTAG 2 cut(s) 583, 604
BfmI CTRYAG 1 cut(s) 696
BisI GCNGC 4 cut(s) 336, 438, 596, 644
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 4 cut(s) 337, 439, 597, 645
Bme1390I CCNGG 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 655
BmrFI CCNGG 1 cut(s) 653
BmsI GCATC 3 cut(s) 247, 295, 331
BoxI GACNNNNGTC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 7
Bpu1102I GCTNAGC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 118, 125
BsaJI CCNNGG 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse1I ACTGG 4 cut(s) 328, 478, 521, 719
Bse3DI GCAATG 2 cut(s) 369, 569
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 1 cut(s) 222
BseMI GCAATG 2 cut(s) 369, 569
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 4 cut(s) 328, 478, 521, 719
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 4 cut(s) 322, 449, 582, 630
BsgI GTGCAG 2 cut(s) 443, 456
Bsh1236I CGCG 1 cut(s) 680
BshFI GGCC 1 cut(s) 656
BslFI GGGAC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 1 cut(s) 656
Bsp143I GATC 2 cut(s) 198, 385
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 1 cut(s) 678
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 1 cut(s) 680
BspPI GGATC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 369, 569
BsrI ACTGG 4 cut(s) 328, 478, 521, 719
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 2 cut(s) 198, 385
BssT1I CCWWGG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 4 cut(s) 303, 403, 531, 697
Bst6I CTCTTC 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 3 cut(s) 7, 191, 431
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 680
BstKTI GATC 2 cut(s) 201, 388
BstMBI GATC 2 cut(s) 198, 385
BstMWI GCNNNNNNNGC 2 cut(s) 12, 604
BstNI CCWGG 1 cut(s) 653
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 651
BstSFI CTRYAG 1 cut(s) 696
BstUI CGCG 1 cut(s) 680
BstV1I GCAGC 4 cut(s) 322, 449, 582, 630
BsuRI GGCC 1 cut(s) 656
BtgZI GCGATG 1 cut(s) 382
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 2 cut(s) 43, 233
BtsIMutI CAGTG 4 cut(s) 43, 233, 528, 536
Cac8I GCNNGC 1 cut(s) 678
Cfr13I GGNCC 1 cut(s) 655
CseI GACGC 1 cut(s) 141
Csp6I GTAC 3 cut(s) 231, 578, 635
CviAII CATG 2 cut(s) 202, 413
CviQI GTAC 3 cut(s) 231, 578, 635
DdeI CTNAG 3 cut(s) 7, 191, 431
DpnI GATC 2 cut(s) 200, 387
DpnII GATC 2 cut(s) 198, 385
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 389
FaeI CATG 2 cut(s) 205, 416
FaqI GGGAC 1 cut(s) 439
FatI CATG 2 cut(s) 201, 412
FauI CCCGC 1 cut(s) 685
FbaI TGATCA 1 cut(s) 198
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 336, 438, 596, 644
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 336, 438, 596, 644
FspBI CTAG 2 cut(s) 583, 604
GluI GCNGC 4 cut(s) 336, 438, 596, 644
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 656
HgaI GACGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 205, 416
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 4 cut(s) 225, 409, 472, 682
HphI GGTGA 3 cut(s) 418, 467, 642
Hpy166II GTNNAC 4 cut(s) 90, 233, 580, 700
Hpy188I TCNGA 6 cut(s) 129, 291, 486, 506, 575, 590
Hpy188III TCNNGA 1 cut(s) 99
Hpy8I GTNNAC 4 cut(s) 90, 233, 580, 700
HpyAV CCTTC 3 cut(s) 96, 585, 742
HpyCH4III ACNGT 4 cut(s) 303, 403, 531, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 604
HpyF3I CTNAG 3 cut(s) 7, 191, 431
Hsp92II CATG 2 cut(s) 205, 416
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 2 cut(s) 198, 385
LpnPI CCDG 9 cut(s) 136, 199, 341, 491, 534, 593, 638, 665, 732
Lsp1109I GCAGC 4 cut(s) 322, 449, 582, 630
LweI GCATC 3 cut(s) 247, 295, 331
MaeI CTAG 2 cut(s) 583, 604
MaeIII GTNAC 6 cut(s) 243, 253, 306, 406, 469, 691
MalI GATC 2 cut(s) 200, 387
MboI GATC 2 cut(s) 198, 385
MboII GAAGA 1 cut(s) 546
MluCI AATT 4 cut(s) 172, 294, 351, 705
MlyI GAGTC 3 cut(s) 234, 403, 466
MnlI CCTC 7 cut(s) 5, 33, 78, 142, 261, 540, 721
MseI TTAA 2 cut(s) 25, 175
MslI CAYNNNNRTG 1 cut(s) 628
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 1 cut(s) 680
MwoI GCNNNNNNNGC 2 cut(s) 12, 604
NdeII GATC 2 cut(s) 198, 385
NlaIII CATG 2 cut(s) 205, 416
NmuCI GTSAC 2 cut(s) 406, 469
PfeI GAWTC 1 cut(s) 682
PkrI GCNGC 4 cut(s) 337, 439, 597, 645
PleI GAGTC 3 cut(s) 233, 403, 466
PpsI GAGTC 3 cut(s) 233, 403, 466
PshAI GACNNNNGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspPI GGNCC 1 cut(s) 655
RsaI GTAC 3 cut(s) 232, 579, 636
RsaNI GTAC 3 cut(s) 231, 578, 635
RseI CAYNNNNRTG 1 cut(s) 628
SaqAI TTAA 2 cut(s) 25, 175
SatI GCNGC 4 cut(s) 336, 438, 596, 644
Sau3AI GATC 2 cut(s) 198, 385
Sau96I GGNCC 1 cut(s) 655
SchI GAGTC 3 cut(s) 234, 403, 466
ScrFI CCNGG 1 cut(s) 653
SfaNI GCATC 3 cut(s) 247, 295, 331
SfcI CTRYAG 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 133, 140
SmoI CTYRAG 2 cut(s) 133, 140
SpeI ACTAGT 1 cut(s) 582
Sse9I AATT 4 cut(s) 172, 294, 351, 705
SsiI CCGC 1 cut(s) 678
SspMI CTAG 2 cut(s) 583, 604
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 4 cut(s) 303, 403, 531, 697
TaqI TCGA 3 cut(s) 98, 384, 466
TasI AATT 4 cut(s) 172, 294, 351, 705
TatI WGTACW 3 cut(s) 230, 577, 634
TfiI GAWTC 1 cut(s) 682
Tru1I TTAA 2 cut(s) 25, 175
Tru9I TTAA 2 cut(s) 25, 175
TscAI CASTG 4 cut(s) 50, 240, 528, 536
TseFI GTSAC 2 cut(s) 406, 469
TseI GCWGC 4 cut(s) 335, 437, 595, 643
Tsp45I GTSAC 2 cut(s) 406, 469
TspDTI ATGAA 2 cut(s) 47, 385
TspRI CASTG 4 cut(s) 50, 240, 528, 536
XapI RAATTY 2 cut(s) 294, 351
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 2 cut(s) 583, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.