Rh6BG090700

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000316
Physical Location & Seq
Reverse (-)
14276616 .. 14319668
43053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG090700.1

Sequence Viewer

Length: 1197 bp
ATGGTGTTCCACGACCATAACAATAATAACAGGCAGTTCATGATGATCTTTGGGGAAGGCTTGAACTACTTTGCTAAGAAGTTCTTTCATGCTCATATTCAGGGACACCCATGTCAACAAATACATGTATGTGCACAGATCGAGGACTCTAATGAGTTTCTTAGCTTCGAGGTTCAAATTCAAACGCAATGGAAGATGAAACCAGAATCTGGGCAGTTCCGATTGCAGAAAGCTTTGTTGGACAAGCAACTTCTTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTGTGCTGTATATGAACATCAAATAGAAGATCTGCTGAACATTTCTTGGTTATTAAGAAATGCGTCTCATTTTGGAATGACTAGGATGGCCAAGACGTTTATAAGATGGCTGAGGAGGCTGAAAAGCTTAAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGCTGCTCATGCCAAGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGACCTGTCTGACCTGAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCGCAGGATGTTAGGAGTCAGTACACTGCATCTGTTGCGAGTAGTTACAAGTTAGTGGAGGACATCAGTTCATCTGCATCAGAAAATTCCACAGTTGTAACATCTAAAACTGCATCTCCAGTTTGCTGCTCATATAGTAAGAATTCTTTGTGCAAGGTGATGAAATACAAATGTCGATCCAAGGGTGGAAGCTGTGGTGACTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCAGTATCAGAGATTTCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTAAAGGTGCAATGCTACTTCAGAGTACACCAGTTCAGAAGGCTGCAGAACCAGAAGGGAATTTTGGAGCAAGAAAGAAACCATTGACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCACAAAAAAAGGGAAAGCCAGCGATTCAGCTTGTTACTGTAGACCCAATTTCCTCAGTGCCGGTAAATATGGAAGGCCTAAAGGAAGCAGAAGGAAATGGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

398

Amino Acids

44.06

Weight (kDa)

7.53

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AasI GACNNNNNNGTC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 1 cut(s) 1131
AclWI GGATC 1 cut(s) 783
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 4 cut(s) 177, 697, 754, 1015
AcuI CTGAAG 4 cut(s) 239, 306, 557, 959
AfaI GTAC 3 cut(s) 635, 982, 1069
AfiI CCNNNNNNNGG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 5 cut(s) 64, 176, 182, 572, 918
AjnI CCWGG 1 cut(s) 1084
AjuI GAANNNNNNNTTGG 4 cut(s) 221, 253, 1002, 1034
AluBI AGCT 9 cut(s) 165, 233, 259, 426, 468, 498, 598, 804, 1120
AluI AGCT 9 cut(s) 165, 233, 259, 426, 468, 498, 598, 804, 1120
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 369
Alw44I GTGCAC 1 cut(s) 132
AlwI GGATC 1 cut(s) 783
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 3 cut(s) 387, 1087, 1165
ApaLI GTGCAC 1 cut(s) 132
ApeKI GCWGC 5 cut(s) 468, 738, 840, 998, 1076
ApoI RAATTY 4 cut(s) 177, 697, 754, 1015
AspS9I GGNCC 1 cut(s) 1088
AsuHPI GGTGA 3 cut(s) 781, 821, 1075
BaeGI GKGCMC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 5 cut(s) 455, 725, 852, 985, 1063
BccI CCATC 2 cut(s) 379, 399
BciT130I CCWGG 1 cut(s) 1086
BclI TGATCA 1 cut(s) 601
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 999, 1128
BglII AGATCT 1 cut(s) 328
BisI GCNGC 5 cut(s) 469, 739, 841, 999, 1077
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 5 cut(s) 470, 740, 842, 1000, 1078
Bme1390I CCNGG 1 cut(s) 1086
BmgT120I GGNCC 1 cut(s) 1088
BmrFI CCNGG 1 cut(s) 1086
BmsI GCATC 4 cut(s) 252, 650, 698, 734
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 1150
Bse1I ACTGG 4 cut(s) 731, 881, 924, 986
Bse3DI GCAATG 2 cut(s) 194, 972
BseBI CCWGG 1 cut(s) 1086
BseDI CCNNGG 1 cut(s) 792
BseGI GGATG 2 cut(s) 390, 625
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 2 cut(s) 194, 972
BseMII CTCAG 3 cut(s) 401, 585, 1158
BseNI ACTGG 4 cut(s) 731, 881, 924, 986
BseRI GAGGAG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 5 cut(s) 455, 725, 852, 985, 1063
BsgI GTGCAG 2 cut(s) 846, 859
BshFI GGCC 3 cut(s) 389, 1089, 1167
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 1151
BslFI GGGAC 2 cut(s) 117, 842
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 369
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 117, 842
BsnI GGCC 3 cut(s) 389, 1089, 1167
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 5 cut(s) 45, 138, 328, 601, 788
Bsp1720I GCTNAGC 1 cut(s) 594
BspANI GGCC 3 cut(s) 389, 1089, 1167
BspCNI CTCAG 3 cut(s) 402, 586, 1157
BspHI TCATGA 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 1003
BspPI GGATC 1 cut(s) 783
BsrDI GCAATG 2 cut(s) 194, 972
BsrFI RCCGGY 1 cut(s) 1150
BsrI ACTGG 4 cut(s) 731, 881, 924, 986
BssAI RCCGGY 1 cut(s) 1150
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 5 cut(s) 45, 138, 328, 601, 788
BssT1I CCWWGG 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 1086
Bst4CI ACNGT 3 cut(s) 706, 934, 1129
Bst6I CTCTTC 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 6 cut(s) 75, 161, 410, 594, 834, 1144
BstF5I GGATG 2 cut(s) 390, 625
BstKTI GATC 5 cut(s) 48, 141, 331, 604, 791
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 5 cut(s) 45, 138, 328, 601, 788
BstMWI GCNNNNNNNGC 3 cut(s) 415, 474, 647
BstNI CCWGG 1 cut(s) 1086
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 1084
BstSFI CTRYAG 2 cut(s) 999, 1128
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 5 cut(s) 455, 725, 852, 985, 1063
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 3 cut(s) 389, 1089, 1167
BtsCI GGATG 2 cut(s) 390, 625
BtsI GCAGTG 3 cut(s) 305, 446, 636
BtsIMutI CAGTG 6 cut(s) 305, 446, 636, 931, 939, 1152
Cac8I GCNNGC 1 cut(s) 1110
CaiI CAGNNNCTG 1 cut(s) 209
CciI TCATGA 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 1150
Cfr13I GGNCC 1 cut(s) 1088
CseI GACGC 2 cut(s) 351, 544
Csp6I GTAC 3 cut(s) 634, 981, 1068
CviAII CATG 8 cut(s) 40, 89, 111, 125, 278, 474, 605, 816
CviQI GTAC 3 cut(s) 634, 981, 1068
DdeI CTNAG 6 cut(s) 75, 161, 410, 594, 834, 1144
DpnI GATC 5 cut(s) 47, 140, 330, 603, 790
DpnII GATC 5 cut(s) 45, 138, 328, 601, 788
DrdI GACNNNNNNGTC 1 cut(s) 111
DseDI GACNNNNNNGTC 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 932
EarI CTCTTC 1 cut(s) 932
Eco130I CCWWGG 1 cut(s) 792
Eco147I AGGCCT 1 cut(s) 1167
Eco57I CTGAAG 4 cut(s) 239, 306, 557, 959
EcoRI GAATTC 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 1084
EcoT14I CCWWGG 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 792
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 8 cut(s) 43, 92, 114, 128, 281, 477, 608, 819
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 2 cut(s) 117, 842
FatI CATG 8 cut(s) 39, 88, 110, 124, 277, 473, 604, 815
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 1 cut(s) 1131
Fnu4HI GCNGC 5 cut(s) 469, 739, 841, 999, 1077
FokI GGATG 2 cut(s) 397, 632
Fsp4HI GCNGC 5 cut(s) 469, 739, 841, 999, 1077
FspBI CTAG 1 cut(s) 381
GluI GCNGC 5 cut(s) 469, 739, 841, 999, 1077
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 3 cut(s) 389, 1089, 1167
HapII CCGG 1 cut(s) 1151
HgaI GACGC 2 cut(s) 351, 544
Hin1II CATG 8 cut(s) 43, 92, 114, 128, 281, 477, 608, 819
HincII GTYRAC 2 cut(s) 116, 493
HindII GTYRAC 2 cut(s) 116, 493
HindIII AAGCTT 2 cut(s) 231, 424
HinfI GANTC 6 cut(s) 146, 206, 628, 812, 875, 1114
HpaII CCGG 1 cut(s) 1151
HphI GGTGA 3 cut(s) 781, 821, 1075
Hpy166II GTNNAC 6 cut(s) 116, 134, 493, 636, 983, 1132
Hpy188I TCNGA 7 cut(s) 221, 532, 694, 889, 909, 978, 993
Hpy188III TCNNGA 2 cut(s) 40, 502
Hpy8I GTNNAC 6 cut(s) 116, 134, 493, 636, 983, 1132
HpyAV CCTTC 7 cut(s) 50, 499, 532, 988, 1004, 1157, 1175
HpyCH4III ACNGT 3 cut(s) 706, 934, 1129
HpyCH4IV ACGT 1 cut(s) 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 415, 474, 647
HpyF3I CTNAG 6 cut(s) 75, 161, 410, 594, 834, 1144
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 8 cut(s) 43, 92, 114, 128, 281, 477, 608, 819
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 5 cut(s) 45, 138, 328, 601, 788
LmnI GCTCC 1 cut(s) 1022
Lsp1109I GCAGC 5 cut(s) 455, 725, 852, 985, 1063
LweI GCATC 4 cut(s) 252, 650, 698, 734
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 6 cut(s) 289, 656, 709, 809, 872, 1123
MalI GATC 5 cut(s) 47, 140, 330, 603, 790
MboI GATC 5 cut(s) 45, 138, 328, 601, 788
MboII GAAGA 4 cut(s) 205, 245, 338, 949
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 8 cut(s) 177, 270, 575, 697, 754, 1015, 1047, 1137
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 4 cut(s) 140, 637, 806, 869
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 389
MseI TTAA 3 cut(s) 353, 428, 578
MslI CAYNNNNRTG 2 cut(s) 129, 1061
Msp20I TGGCCA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 1 cut(s) 1151
MspR9I CCNGG 1 cut(s) 1086
MvaI CCWGG 1 cut(s) 1086
MwoI GCNNNNNNNGC 3 cut(s) 415, 474, 647
NdeII GATC 5 cut(s) 45, 138, 328, 601, 788
NlaIII CATG 8 cut(s) 43, 92, 114, 128, 281, 477, 608, 819
NmuCI GTSAC 3 cut(s) 289, 809, 872
NspI RCATGY 1 cut(s) 128
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 1167
PciI ACATGT 1 cut(s) 124
PfeI GAWTC 2 cut(s) 206, 1114
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 5 cut(s) 470, 740, 842, 1000, 1078
PleI GAGTC 4 cut(s) 140, 636, 806, 869
PpsI GAGTC 4 cut(s) 140, 636, 806, 869
PscI ACATGT 1 cut(s) 124
PsiI TTATAA 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 1084
PspGI CCWGG 1 cut(s) 1084
PspPI GGNCC 1 cut(s) 1088
PstI CTGCAG 1 cut(s) 1003
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 3 cut(s) 635, 982, 1069
RsaNI GTAC 3 cut(s) 634, 981, 1068
RseI CAYNNNNRTG 2 cut(s) 129, 1061
SaqAI TTAA 3 cut(s) 353, 428, 578
SatI GCNGC 5 cut(s) 469, 739, 841, 999, 1077
Sau3AI GATC 5 cut(s) 45, 138, 328, 601, 788
Sau96I GGNCC 1 cut(s) 1088
SchI GAGTC 4 cut(s) 140, 637, 806, 869
ScrFI CCNGG 1 cut(s) 1086
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 4 cut(s) 252, 650, 698, 734
SfcI CTRYAG 2 cut(s) 999, 1128
SmiMI CAYNNNNRTG 2 cut(s) 129, 1061
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 8 cut(s) 177, 270, 575, 697, 754, 1015, 1047, 1137
SseBI AGGCCT 1 cut(s) 1167
SspMI CTAG 1 cut(s) 381
StuI AGGCCT 1 cut(s) 1167
StyD4I CCNGG 1 cut(s) 1084
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 706, 934, 1129
TaiI ACGT 1 cut(s) 398
TaqI TCGA 5 cut(s) 141, 168, 501, 787, 869
TasI AATT 8 cut(s) 177, 270, 575, 697, 754, 1015, 1047, 1137
TatI WGTACW 3 cut(s) 633, 980, 1067
TfiI GAWTC 2 cut(s) 206, 1114
Tru1I TTAA 3 cut(s) 353, 428, 578
Tru9I TTAA 3 cut(s) 353, 428, 578
TscAI CASTG 6 cut(s) 305, 453, 643, 931, 939, 1152
TseFI GTSAC 3 cut(s) 289, 809, 872
TseI GCWGC 5 cut(s) 468, 738, 840, 998, 1076
Tsp45I GTSAC 3 cut(s) 289, 809, 872
TspDTI ATGAA 7 cut(s) 28, 77, 212, 327, 450, 672, 788
TspRI CASTG 6 cut(s) 305, 453, 643, 931, 939, 1152
Van91I CCANNNNNTGG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 132
XapI RAATTY 4 cut(s) 177, 697, 754, 1015
XceI RCATGY 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 1131
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.