Rh7BG422900

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000316
Physical Location & Seq
Reverse (-)
48162598 .. 48171604
9007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG422900.1

Sequence Viewer

Length: 1572 bp
ATGAGTGATCCTCATAATGAATTCAAGAGGAAGAATGTGCTGATTGAGAGAAAAAGTCATTCCGAGGCATCAAAATTTTCCATGCCGGTTGAGAAATACCTCGATATTCTGGGTCAGAGCAGGCGAAAGCTTTTTGAAATAAGATGTAGTCGACCAAGACCACATTTGGATGATAAGGAGTTGCTTAAAAGTGTATCATCCAGGATGCGTAGGAAAAAAGAAAAACTCCATGTACTCTGGAAAGCGCTGGACTTAGATTGCATAGGTGCTTCTGAACTTGCTCTACTAAGGGGGAAGAATGGCTTGTGCAAGAGCTGTGTAAAGCGTATTCTGCTGGCAAAAGAAAACTCAGAATATGGTTTAGAGGGAGAGAAAATAGACTTAGAGGATCAAGATGAATGGCTATTCAAAGAATATTGGGAGATCGTAAAGGAAAAGGAAGGATTGACTTCAGGCGATGTTTATTCAGTAAATGCCGATTTAAAGAAGAGAGAAAATCAAAGCTGCAGATTCTTACCTATAAATATTAGTGAGAGTGACGAAAGTAAGGACTTGACAATGTCAGATAGCGACACTAGTGGCACTGGTGTTACAGAAATTCAGAAGCCAATGAGATTAAGAAAGGGATCTAAGCGACTAGAGTTTATAGGATGGGGTTCTAAACCTCTCATTGAGTTTCTAAGATCCATTGGGAAGGATACAACTGAGAAGATATCCCAGCTTGATTTGGACAATATTATCTGTAACTACATCAGAGATAAAGAGCTTTATGTGACCAAAGACAAGAGAAAGGCTCTATGTGATCAAAGTCTGCGATCCATTTTCAGAACGAAATTTGTATTCCTGGTAAGGATATATGGTCTTCTAGGGGAACATCTTGTCGAGAACATAACAGAGGATAGTGGAAGCGAGGATGAGGAAGAAATCAAATTGGAAGATAAGAACAATGGTACTACGCATGAACGCAAGAAGAGAAGAGTGAGCTCTGATACAACCATAGCATCTGATGAAAAGAAAGCAAGTCCTAGATTCCAAAAGAGCTGTTTCGCATCTATTATCCCTGAGAATATGAAGCTTGTTTACATAAAGAGGAGCTTACTGGAGAAGTTACTGAAGGAGCCTGATCATTCGGAAAGCAAGGTACTAGGGAGTTTTGTGAGAGTGAAAAATAACCCCCTAGACTACCTTCAGAGAAATACTCACCAATTTTCACAAGTTAAAGGCATAAAGGAAATCTCAGCAACCAATGGTGAGGGCAATAAAATTCTCCTGCAAGTTTCCTATTTTGGAAACGATATTCCCCTTTCTCTGCTTTCAGATTCTAACTTCAGTCAGGAAGAGTGTGAAGATTTGTGCCAAAACGTGGCAAATGGCTATCTAAAGAAACCTACAGTTGTTGAGTTTGAAAAGAAGGCAAGAGAACTGCATCAGGACATAACTAAGCATTGGATTGAAAAGGAGTTGGTGAGATTGCAGAATTGTGTTGATTGGGCAAATGAGAAGGGATGGAGACGAGAATATCCTTCCATAGTATTTATGAGTTCTTTTTTCATCATTTTGAATGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

523

Amino Acids

60.56

Weight (kDa)

8.53

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 221 - 293 1.3e-07 SWIB/MDM2 domain
Plus-3 PF03126 356 - 455 1.3e-14 Plus-3 domain
NERD_plant PF25980 477 - 510 6e-17 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1363
AccI GTMKAC 1 cut(s) 151
AclWI GGATC 5 cut(s) 2, 396, 634, 678, 810
AcsI RAATTY 5 cut(s) 20, 74, 597, 833, 1263
AcuI CTGAAG 4 cut(s) 435, 1133, 1172, 1312
AfaI GTAC 3 cut(s) 234, 952, 1143
AfeI AGCGCT 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 1363
AgsI TTSAA 6 cut(s) 25, 137, 409, 1406, 1454, 1561
AhlI ACTAGT 1 cut(s) 575
AjnI CCWGG 2 cut(s) 200, 843
AluBI AGCT 9 cut(s) 130, 315, 504, 721, 766, 984, 1041, 1075, 1095
AluI AGCT 9 cut(s) 130, 315, 504, 721, 766, 984, 1041, 1075, 1095
Alw21I GWGCWC 1 cut(s) 986
Alw26I GTCTC 1 cut(s) 1504
AlwI GGATC 5 cut(s) 2, 396, 634, 678, 810
Aor51HI AGCGCT 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 504
ApoI RAATTY 5 cut(s) 20, 74, 597, 833, 1263
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 3 cut(s) 1193, 1262, 1477
BanII GRGCYC 1 cut(s) 986
BarI GAAGNNNNNNTAC 2 cut(s) 1064, 1096
BbsI GAAGAC 1 cut(s) 854
Bbv12I GWGCWC 1 cut(s) 986
BbvI GCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 645, 1500
BciT130I CCWGG 2 cut(s) 202, 845
BciVI GTATCC 1 cut(s) 691
BclI TGATCA 2 cut(s) 802, 1123
BcoDI GTCTC 1 cut(s) 1504
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 6 cut(s) 576, 638, 866, 1026, 1145, 1178
BfmI CTRYAG 2 cut(s) 505, 1389
BfoI RGCGCY 1 cut(s) 248
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 1 cut(s) 505
BlsI GCNGC 1 cut(s) 506
Bme1390I CCNGG 2 cut(s) 202, 845
BmiI GGNNCC 1 cut(s) 1119
BmrFI CCNGG 2 cut(s) 202, 845
BmsI GCATC 5 cut(s) 77, 195, 1010, 1058, 1435
BpiI GAAGAC 1 cut(s) 854
BplI GAGNNNNNCTC 5 cut(s) 27, 778, 810, 1183, 1215
BpmI CTGGAG 1 cut(s) 1121
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 1363
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 589, 1104
BseBI CCWGG 2 cut(s) 202, 845
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 6 cut(s) 175, 197, 210, 656, 919, 1511
BseLI CCNNNNNNNGG 1 cut(s) 1363
BseMII CTCAG 4 cut(s) 363, 696, 1053, 1251
BseNI ACTGG 2 cut(s) 589, 1104
BseRI GAGGAG 1 cut(s) 1105
BseXI GCAGC 1 cut(s) 491
BseYI CCCAGC 1 cut(s) 717
BsiHKAI GWGCWC 1 cut(s) 986
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 1363
BsmAI GTCTC 1 cut(s) 1504
BsmBI CGTCTC 1 cut(s) 1504
BsmI GAATGC 1 cut(s) 1567
Bsp1286I GDGCHC 1 cut(s) 986
Bsp143I GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
BspCNI CTCAG 4 cut(s) 362, 697, 1054, 1250
BspLI GGNNCC 1 cut(s) 1119
BspMAI CTGCAG 1 cut(s) 509
BspPI GGATC 5 cut(s) 2, 396, 634, 678, 810
BsrFI RCCGGY 1 cut(s) 85
BsrI ACTGG 2 cut(s) 589, 1104
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
Bst2UI CCWGG 2 cut(s) 202, 845
Bst4CI ACNGT 1 cut(s) 1393
Bst6I CTCTTC 4 cut(s) 482, 965, 970, 1332
BstC8I GCNNGC 2 cut(s) 122, 336
BstF5I GGATG 6 cut(s) 175, 197, 210, 656, 919, 1511
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 8 cut(s) 10, 391, 426, 629, 686, 805, 818, 1126
BstMAI GTCTC 1 cut(s) 1504
BstMBI GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 2 cut(s) 202, 845
BstSCI CCNGG 2 cut(s) 200, 843
BstSFI CTRYAG 2 cut(s) 505, 1389
BstV1I GCAGC 1 cut(s) 491
BstV2I GAAGAC 1 cut(s) 854
BstX2I RGATCY 2 cut(s) 626, 683
BstYI RGATCY 2 cut(s) 626, 683
BsuI GTATCC 1 cut(s) 691
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 6 cut(s) 175, 197, 210, 656, 919, 1511
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 2 cut(s) 122, 336
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 85
Csp6I GTAC 3 cut(s) 233, 951, 1142
CviAII CATG 3 cut(s) 82, 230, 959
CviQI GTAC 3 cut(s) 233, 951, 1142
DpnI GATC 8 cut(s) 9, 390, 425, 628, 685, 804, 817, 1125
DpnII GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
DraI TTTAAA 1 cut(s) 483
Eam1104I CTCTTC 4 cut(s) 482, 965, 970, 1332
EarI CTCTTC 4 cut(s) 482, 965, 970, 1332
Ecl136II GAGCTC 1 cut(s) 984
Eco24I GRGCYC 1 cut(s) 986
Eco32I GATATC 1 cut(s) 714
Eco47III AGCGCT 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 984
Eco57I CTGAAG 4 cut(s) 435, 1133, 1172, 1312
EcoICRI GAGCTC 1 cut(s) 984
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 200, 843
EcoRV GATATC 1 cut(s) 714
EcoT38I GRGCYC 1 cut(s) 986
Esp3I CGTCTC 1 cut(s) 1504
FaeI CATG 3 cut(s) 85, 233, 962
FalI AAGNNNNNCTT 4 cut(s) 287, 319, 1079, 1111
FatI CATG 3 cut(s) 81, 229, 958
FbaI TGATCA 2 cut(s) 802, 1123
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 505
FokI GGATG 6 cut(s) 182, 184, 217, 663, 926, 1518
FriOI GRGCYC 1 cut(s) 986
Fsp4HI GCNGC 1 cut(s) 505
FspBI CTAG 6 cut(s) 576, 638, 866, 1026, 1145, 1178
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 505
GsaI CCCAGC 1 cut(s) 721
GsuI CTGGAG 1 cut(s) 1121
HaeII RGCGCY 1 cut(s) 248
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 247
Hin1II CATG 3 cut(s) 85, 233, 962
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HindIII AAGCTT 2 cut(s) 128, 1073
HinfI GANTC 3 cut(s) 510, 1029, 1319
HpaII CCGG 1 cut(s) 86
HphI GGTGA 3 cut(s) 1193, 1262, 1477
Hpy166II GTNNAC 2 cut(s) 152, 1081
Hpy188III TCNNGA 6 cut(s) 25, 238, 392, 883, 1334, 1430
Hpy8I GTNNAC 2 cut(s) 152, 1081
HpyAV CCTTC 7 cut(s) 434, 688, 1108, 1196, 1405, 1495, 1533
HpyCH4III ACNGT 1 cut(s) 1393
HpyCH4IV ACGT 1 cut(s) 1362
HpyCH4V TGCA 6 cut(s) 261, 309, 507, 1273, 1426, 1474
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 1362
Hsp92II CATG 3 cut(s) 85, 233, 962
HspAI GCGC 1 cut(s) 245
Ksp22I TGATCA 2 cut(s) 802, 1123
Kzo9I GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
LmnI GCTCC 2 cut(s) 1092, 1117
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 5 cut(s) 77, 195, 1010, 1058, 1435
MaeI CTAG 6 cut(s) 576, 638, 866, 1026, 1145, 1178
MaeII ACGT 1 cut(s) 1362
MaeIII GTNAC 5 cut(s) 536, 589, 743, 772, 1107
MalI GATC 8 cut(s) 9, 390, 425, 628, 685, 804, 817, 1125
MboI GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
MflI RGATCY 2 cut(s) 626, 683
MhlI GDGCHC 1 cut(s) 986
MluCI AATT 9 cut(s) 20, 74, 597, 833, 929, 1205, 1263, 1477, 1567
MseI TTAA 5 cut(s) 186, 482, 617, 1218, 1570
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 202, 845
Mva1269I GAATGC 1 cut(s) 1567
MvaI CCWGG 2 cut(s) 202, 845
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
NlaIII CATG 3 cut(s) 85, 233, 962
NlaIV GGNNCC 1 cut(s) 1119
NmuCI GTSAC 2 cut(s) 536, 772
PctI GAATGC 1 cut(s) 1567
PfeI GAWTC 3 cut(s) 510, 1029, 1319
PflFI GACNNNGTC 1 cut(s) 559
PflMI CCANNNNNTGG 1 cut(s) 1363
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 986
Psp6I CCWGG 2 cut(s) 200, 843
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 2 cut(s) 200, 843
PspN4I GGNNCC 1 cut(s) 1119
PsrI GAACNNNNNNTAC 2 cut(s) 267, 299
PstI CTGCAG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 626, 683
PsyI GACNNNGTC 1 cut(s) 559
RsaI GTAC 3 cut(s) 234, 952, 1143
RsaNI GTAC 3 cut(s) 233, 951, 1142
RseI CAYNNNNRTG 1 cut(s) 168
SacI GAGCTC 1 cut(s) 986
SalI GTCGAC 1 cut(s) 150
SaqAI TTAA 5 cut(s) 186, 482, 617, 1218, 1570
SatI GCNGC 1 cut(s) 505
Sau3AI GATC 8 cut(s) 7, 388, 423, 626, 683, 802, 815, 1123
ScrFI CCNGG 2 cut(s) 202, 845
SduI GDGCHC 1 cut(s) 986
SfaNI GCATC 5 cut(s) 77, 195, 1010, 1058, 1435
SfcI CTRYAG 2 cut(s) 505, 1389
SmiMI CAYNNNNRTG 1 cut(s) 168
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 9 cut(s) 20, 74, 597, 833, 929, 1205, 1263, 1477, 1567
SspI AATATT 3 cut(s) 416, 526, 736
SspMI CTAG 6 cut(s) 576, 638, 866, 1026, 1145, 1178
SstI GAGCTC 1 cut(s) 986
StyD4I CCNGG 2 cut(s) 200, 843
TaaI ACNGT 1 cut(s) 1393
TaiI ACGT 1 cut(s) 1365
TaqI TCGA 3 cut(s) 102, 151, 882
TasI AATT 9 cut(s) 20, 74, 597, 833, 929, 1205, 1263, 1477, 1567
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 3 cut(s) 510, 1029, 1319
Tru1I TTAA 5 cut(s) 186, 482, 617, 1218, 1570
Tru9I TTAA 5 cut(s) 186, 482, 617, 1218, 1570
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 536, 772
TseI GCWGC 1 cut(s) 504
Tsp45I GTSAC 2 cut(s) 536, 772
TspDTI ATGAA 6 cut(s) 33, 411, 975, 1023, 1085, 1540
TspRI CASTG 1 cut(s) 589
Tth111I GACNNNGTC 1 cut(s) 559
Van91I CCANNNNNTGG 1 cut(s) 1363
XapI RAATTY 5 cut(s) 20, 74, 597, 833, 1263
XmiI GTMKAC 1 cut(s) 151
XspI CTAG 6 cut(s) 576, 638, 866, 1026, 1145, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.