RchiOBHm_Chr7g0236371

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000316
Physical Location & Seq
Reverse (-)
61202606 .. 61208472
5867 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21182

Sequence Viewer

Length: 1476 bp
ATGATGAAGAAGGCCAACCGCCGCTCCAAGCAGACCGCCGACCCGTCCGCCGCCGCCGCCGATTGCGAGAAGCGAGTTCGCGAACTCGAAATCGAAAACAAAGCCTTTCAGAAGGAGGTTGAGGAGCTGAGATACAAGCTTGCAAATGTTTCATCTACTAGTGGTGTGGAGAACAGTGCTCAGAAACTCAGAGAAAACTACCTGCAGAAGTTGACTTTCCTCGAAGATCAGGTTACGGTGTTGACGAGGAAGCTAGATTCTCAGTCTCAACTCTCAACCCAAAGAAGAAGAGGGGACGAGTCAGCAAAGCCGTTCCAGTTTGAGATTCAGAGATTGAAGGCTCAGAAGGTTCAAATGCAATGTAAGATGAAACTAGAATCTGTGCAGTTCAGATTGCATAAAGCTTTGTTGGACAAGGAAGTTCTTCAGCTCAAGAAAGAGAGTAGGAAGAATAAACATGAGATGCACAAGCTATTGGCCTCCAATCAAAGGCTGAAGACTGTTTTGCGTCGAAAGACTGAAGAAGCATCTGTGGCTACTAAACAGCTGAGACGACTCTTAGAATCTCGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGGTGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGACCTATGTGCTATATATGAACGTCAAATAGAAGAGATGGTGGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGCTTTGAGAAGGATTTAGATATAACAGACCTGAAGGCTCAAGTAGTCAGCCTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCACAGGGCATTAGGAATCAGCATACTGCATCTGTTGGGAGCAGTTACAAGTTAGCGGAGGACATTAGTCCATCTGCATCAGAAAATTCCACAGTTGGAACATCTAAAACGGCAGCTCCAGTTTGCTGCTCATGCACTAAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGCATCCAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCACCACTATCAGAGATTGCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTTCAGAAGCCTGCTGAACCGGAAGGGAACTTTGGAGCAATAAAGAAACCCTTAACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCAAGAAAAAAGGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAGACCCAATTTCCTCAGTGCCAGTAAATATGGAAGGAAATGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

491

Amino Acids

54.33

Weight (kDa)

9.19

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 12 - 147 2.5e-25 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 1103
AccBSI CCGCTC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 1428
AccII CGCG 1 cut(s) 81
AciI CCGC 8 cut(s) 19, 22, 36, 48, 51, 54, 57, 962
AclWI GGATC 1 cut(s) 1077
AcsI RAATTY 2 cut(s) 991, 1048
AcuI CTGAAG 7 cut(s) 410, 515, 540, 672, 851, 1253, 1272
AfaI GTAC 1 cut(s) 1363
AfiI CCNNNNNNNGG 1 cut(s) 489
AgsI TTSAA 5 cut(s) 337, 353, 670, 866, 1212
AhlI ACTAGT 2 cut(s) 158, 1279
AjnI CCWGG 2 cut(s) 780, 1378
AjuI GAANNNNNNNTTGG 2 cut(s) 1296, 1328
Alw21I GWGCWC 3 cut(s) 181, 776, 1279
Alw26I GTCTC 2 cut(s) 270, 544
Alw44I GTGCAC 1 cut(s) 1275
AlwI GGATC 1 cut(s) 1077
AoxI GGCC 3 cut(s) 12, 477, 1381
ApaLI GTGCAC 1 cut(s) 1275
ApeKI GCWGC 5 cut(s) 1019, 1032, 1121, 1134, 1370
ApoI RAATTY 2 cut(s) 991, 1048
Asp700I GAANNNNTTC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 1382
AsuHPI GGTGA 2 cut(s) 1164, 1369
BaeGI GKGCMC 1 cut(s) 1279
BanI GGYRCC 1 cut(s) 1103
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 3 cut(s) 181, 776, 1279
BbvI GCAGC 5 cut(s) 1019, 1031, 1133, 1146, 1357
BccI CCATC 2 cut(s) 703, 985
BceAI ACGGC 2 cut(s) 295, 1032
BciT130I CCWGG 2 cut(s) 782, 1380
BclI TGATCA 1 cut(s) 895
BcoDI GTCTC 2 cut(s) 270, 544
BcuI ACTAGT 2 cut(s) 158, 1279
BfaI CTAG 4 cut(s) 159, 254, 374, 1280
BfmI CTRYAG 2 cut(s) 203, 1425
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 9 cut(s) 22, 51, 54, 57, 1020, 1033, 1122, 1135, 1371
BlpI GCTNAGC 1 cut(s) 888
BlsI GCNGC 9 cut(s) 23, 52, 55, 58, 1021, 1034, 1123, 1136, 1372
Bme1390I CCNGG 2 cut(s) 782, 1380
BmgT120I GGNCC 1 cut(s) 1382
BmiI GGNNCC 1 cut(s) 1105
BmrFI CCNGG 2 cut(s) 782, 1380
BmsI GCATC 5 cut(s) 453, 536, 944, 992, 1133
BoxI GACNNNNGTC 1 cut(s) 972
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 1 cut(s) 1008
Bpu1102I GCTNAGC 1 cut(s) 888
BpuEI CTTGAG 2 cut(s) 416, 822
BsaJI CCNNGG 1 cut(s) 1086
BsaWI WCCGGW 1 cut(s) 1300
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 1006, 1036
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse1I ACTGG 4 cut(s) 316, 1025, 1218, 1448
Bse3DI GCAATG 2 cut(s) 365, 1266
BseBI CCWGG 2 cut(s) 782, 1380
BseDI CCNNGG 1 cut(s) 1086
BseGI GGATG 1 cut(s) 1124
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMI GCAATG 2 cut(s) 365, 1266
BseNI ACTGG 4 cut(s) 316, 1025, 1218, 1448
BseRI GAGGAG 2 cut(s) 137, 731
BseSI GKGCMC 1 cut(s) 1279
BseXI GCAGC 5 cut(s) 1019, 1031, 1133, 1146, 1357
BsgI GTGCAG 4 cut(s) 404, 650, 1140, 1153
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 14, 479, 1383
BshNI GGYRCC 1 cut(s) 1103
BsiHKAI GWGCWC 3 cut(s) 181, 776, 1279
BsiSI CCGG 1 cut(s) 1301
BslFI GGGAC 2 cut(s) 308, 1136
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 2 cut(s) 270, 544
BsmBI CGTCTC 1 cut(s) 544
BsmFI GGGAC 2 cut(s) 308, 1136
BsnI GGCC 3 cut(s) 14, 479, 1383
Bsp1286I GDGCHC 3 cut(s) 181, 776, 1279
Bsp143I GATC 3 cut(s) 226, 895, 1082
Bsp1720I GCTNAGC 1 cut(s) 888
Bsp68I TCGCGA 1 cut(s) 81
BspACI CCGC 8 cut(s) 19, 22, 36, 48, 51, 54, 57, 962
BspANI GGCC 3 cut(s) 14, 479, 1383
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 1105
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 1 cut(s) 1077
BspT107I GGYRCC 1 cut(s) 1103
BsrBI CCGCTC 1 cut(s) 24
BsrDI GCAATG 2 cut(s) 365, 1266
BsrI ACTGG 4 cut(s) 316, 1025, 1218, 1448
BssECI CCNNGG 1 cut(s) 1086
BssMI GATC 3 cut(s) 226, 895, 1082
BssT1I CCWWGG 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 782, 1380
Bst4CI ACNGT 6 cut(s) 176, 238, 502, 1000, 1228, 1426
Bst6I CTCTTC 3 cut(s) 283, 699, 1226
BstC8I GCNNGC 3 cut(s) 141, 1293, 1407
BstF5I GGATG 1 cut(s) 1124
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 3 cut(s) 229, 898, 1085
BstMAI GTCTC 2 cut(s) 270, 544
BstMBI GATC 3 cut(s) 226, 895, 1082
BstMWI GCNNNNNNNGC 3 cut(s) 56, 533, 1038
BstNI CCWGG 2 cut(s) 782, 1380
BstPAI GACNNNNGTC 1 cut(s) 972
BstSCI CCNGG 2 cut(s) 780, 1378
BstSFI CTRYAG 2 cut(s) 203, 1425
BstSLI GKGCMC 1 cut(s) 1279
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 5 cut(s) 1019, 1031, 1133, 1146, 1357
BstV2I GAAGAC 1 cut(s) 503
BsuRI GGCC 3 cut(s) 14, 479, 1383
BtsCI GGATG 1 cut(s) 1124
BtsI GCAGTG 1 cut(s) 749
BtsIMutI CAGTG 5 cut(s) 181, 749, 1225, 1233, 1449
BtuMI TCGCGA 1 cut(s) 81
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 141, 1293, 1407
Cfr13I GGNCC 1 cut(s) 1382
CseI GACGC 1 cut(s) 497
Csp6I GTAC 1 cut(s) 1362
CviAII CATG 6 cut(s) 458, 644, 777, 899, 1038, 1110
CviQI GTAC 1 cut(s) 1362
DpnI GATC 3 cut(s) 228, 897, 1084
DpnII GATC 3 cut(s) 226, 895, 1082
Eam1104I CTCTTC 3 cut(s) 283, 699, 1226
EarI CTCTTC 3 cut(s) 283, 699, 1226
EciI GGCGGA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 1086
Eco57I CTGAAG 7 cut(s) 410, 515, 540, 672, 851, 1253, 1272
EcoRI GAATTC 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 780, 1378
EcoT14I CCWWGG 1 cut(s) 1086
ErhI CCWWGG 1 cut(s) 1086
Esp3I CGTCTC 1 cut(s) 544
FaeI CATG 6 cut(s) 461, 647, 780, 902, 1041, 1113
FalI AAGNNNNNCTT 2 cut(s) 1316, 1348
FaqI GGGAC 2 cut(s) 308, 1136
FatI CATG 6 cut(s) 457, 643, 776, 898, 1037, 1109
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 1 cut(s) 1428
Fnu4HI GCNGC 9 cut(s) 22, 51, 54, 57, 1020, 1033, 1122, 1135, 1371
FokI GGATG 1 cut(s) 1111
Fsp4HI GCNGC 9 cut(s) 22, 51, 54, 57, 1020, 1033, 1122, 1135, 1371
FspBI CTAG 4 cut(s) 159, 254, 374, 1280
GluI GCNGC 9 cut(s) 22, 51, 54, 57, 1020, 1033, 1122, 1135, 1371
GsuI CTGGAG 1 cut(s) 1008
HaeIII GGCC 3 cut(s) 14, 479, 1383
HapII CCGG 1 cut(s) 1301
HgaI GACGC 1 cut(s) 497
Hin1II CATG 6 cut(s) 461, 647, 780, 902, 1041, 1113
HincII GTYRAC 3 cut(s) 213, 243, 796
HindII GTYRAC 3 cut(s) 213, 243, 796
HindIII AAGCTT 3 cut(s) 137, 402, 728
HinfI GANTC 9 cut(s) 257, 299, 325, 377, 555, 563, 922, 1169, 1411
HpaII CCGG 1 cut(s) 1301
HphI GGTGA 2 cut(s) 1164, 1369
Hpy166II GTNNAC 5 cut(s) 213, 243, 796, 1277, 1429
Hpy188III TCNNGA 2 cut(s) 80, 433
Hpy8I GTNNAC 5 cut(s) 213, 243, 796, 1277, 1429
Hpy99I CGWCG 1 cut(s) 513
HpyAV CCTTC 9 cut(s) 4, 106, 331, 340, 802, 826, 1247, 1298, 1454
HpyCH4III ACNGT 6 cut(s) 176, 238, 502, 1000, 1228, 1426
HpyCH4IV ACGT 1 cut(s) 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 533, 1038
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 6 cut(s) 461, 647, 780, 902, 1041, 1113
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 3 cut(s) 226, 895, 1082
LmnI GCTCC 5 cut(s) 29, 124, 945, 1027, 1316
Lsp1109I GCAGC 5 cut(s) 1019, 1031, 1133, 1146, 1357
LweI GCATC 5 cut(s) 453, 536, 944, 992, 1133
MaeI CTAG 4 cut(s) 159, 254, 374, 1280
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 6 cut(s) 232, 655, 906, 950, 1166, 1420
MalI GATC 3 cut(s) 228, 897, 1084
MbiI CCGCTC 1 cut(s) 24
MboI GATC 3 cut(s) 226, 895, 1082
MhlI GDGCHC 3 cut(s) 181, 776, 1279
MluCI AATT 6 cut(s) 636, 869, 991, 1048, 1341, 1434
MlyI GAGTC 3 cut(s) 308, 549, 1163
MmeI TCCRAC 2 cut(s) 390, 982
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 3 cut(s) 732, 872, 1334
MslI CAYNNNNRTG 2 cut(s) 1129, 1355
MspA1I CMGCKG 2 cut(s) 547, 625
MspI CCGG 1 cut(s) 1301
MspR9I CCNGG 2 cut(s) 782, 1380
MvaI CCWGG 2 cut(s) 782, 1380
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 56, 533, 1038
NdeII GATC 3 cut(s) 226, 895, 1082
NlaIII CATG 6 cut(s) 461, 647, 780, 902, 1041, 1113
NlaIV GGNNCC 1 cut(s) 1105
NmuCI GTSAC 3 cut(s) 655, 906, 1166
NruI TCGCGA 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 6 cut(s) 257, 325, 377, 563, 922, 1411
PkrI GCNGC 9 cut(s) 23, 52, 55, 58, 1021, 1034, 1123, 1136, 1372
PleI GAGTC 3 cut(s) 307, 549, 1163
PpsI GAGTC 3 cut(s) 307, 549, 1163
PshAI GACNNNNGTC 1 cut(s) 972
Psp6I CCWGG 2 cut(s) 780, 1378
PspGI CCWGG 2 cut(s) 780, 1378
PspN4I GGNNCC 1 cut(s) 1105
PspPI GGNCC 1 cut(s) 1382
PstI CTGCAG 1 cut(s) 207
PvuII CAGCTG 2 cut(s) 547, 625
RruI TCGCGA 1 cut(s) 81
RsaI GTAC 1 cut(s) 1363
RsaNI GTAC 1 cut(s) 1362
RseI CAYNNNNRTG 2 cut(s) 1129, 1355
SaqAI TTAA 3 cut(s) 732, 872, 1334
SatI GCNGC 9 cut(s) 22, 51, 54, 57, 1020, 1033, 1122, 1135, 1371
Sau3AI GATC 3 cut(s) 226, 895, 1082
Sau96I GGNCC 1 cut(s) 1382
SchI GAGTC 3 cut(s) 308, 549, 1163
ScrFI CCNGG 2 cut(s) 782, 1380
SduI GDGCHC 3 cut(s) 181, 776, 1279
SfaNI GCATC 5 cut(s) 453, 536, 944, 992, 1133
SfcI CTRYAG 2 cut(s) 203, 1425
SmiMI CAYNNNNRTG 2 cut(s) 1129, 1355
SmlI CTYRAG 2 cut(s) 431, 837
SmoI CTYRAG 2 cut(s) 431, 837
SpeI ACTAGT 2 cut(s) 158, 1279
Sse9I AATT 6 cut(s) 636, 869, 991, 1048, 1341, 1434
SsiI CCGC 8 cut(s) 19, 22, 36, 48, 51, 54, 57, 962
SspMI CTAG 4 cut(s) 159, 254, 374, 1280
StyD4I CCNGG 2 cut(s) 780, 1378
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 6 cut(s) 176, 238, 502, 1000, 1228, 1426
TaiI ACGT 1 cut(s) 697
TaqI TCGA 6 cut(s) 87, 93, 222, 511, 1081, 1163
TasI AATT 6 cut(s) 636, 869, 991, 1048, 1341, 1434
TatI WGTACW 1 cut(s) 1361
TauI GCSGC 4 cut(s) 24, 53, 56, 59
TfiI GAWTC 6 cut(s) 257, 325, 377, 563, 922, 1411
Tru1I TTAA 3 cut(s) 732, 872, 1334
Tru9I TTAA 3 cut(s) 732, 872, 1334
TscAI CASTG 5 cut(s) 181, 756, 1225, 1233, 1449
TseFI GTSAC 3 cut(s) 655, 906, 1166
TseI GCWGC 5 cut(s) 1019, 1032, 1121, 1134, 1370
Tsp45I GTSAC 3 cut(s) 655, 906, 1166
TspDTI ATGAA 6 cut(s) 20, 141, 383, 705, 753, 1082
TspRI CASTG 5 cut(s) 181, 756, 1225, 1233, 1449
VneI GTGCAC 1 cut(s) 1275
XapI RAATTY 2 cut(s) 991, 1048
XmiI GTMKAC 1 cut(s) 1428
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 4 cut(s) 159, 254, 374, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.