RchiOBHm_Chr6g0258571

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000316
Physical Location & Seq
Reverse (-)
13894261 .. 13897991
3731 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23183

Sequence Viewer

Length: 558 bp
ATGAAACTAGAATCTGGGCAGTTCCGATTGCAGAAAGCTTTGTTGGACAAGCAACTTCTTCAGGTTTTGCATAGAAAGACTGAAGAAGCATCTGTGGCTACTAAACAGCTGAGGCGGCGCTTAGAATCTTGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTATGTGCTGTATATGAACGTCAAATAGAAGAGATGGCTAAGGAGGCTGAAAAGCTTAAAGATGAAGTAGACGCACTGCAACAAGAAAAGTCAAGGTGCTCATTCCAGGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGAACTGTCTGACCTGAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTCGCAGGACGTTAGGAGTCAGCATACTGCATCTGTTGGGAGTAGTTACAATTTAGTGGAGGACATCAGTCCATCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.98

Weight (kDa)

5.37

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 1 cut(s) 115
AcuI CTGAAG 4 cut(s) 44, 102, 234, 422
AgsI TTSAA 2 cut(s) 232, 437
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 7 cut(s) 38, 109, 187, 238, 292, 363, 463
AluI AGCT 7 cut(s) 38, 109, 187, 238, 292, 363, 463
Alw21I GWGCWC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 110
BccI CCATC 2 cut(s) 265, 556
BciT130I CCWGG 1 cut(s) 344
BclI TGATCA 1 cut(s) 466
BfaI CTAG 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 3 cut(s) 98, 180, 515
BoxI GACNNNNGTC 1 cut(s) 543
Bpu10I CCTNAGC 2 cut(s) 110, 276
Bpu1102I GCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 344
BseMII CTCAG 3 cut(s) 101, 197, 450
BsiHKAI GWGCWC 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 1 cut(s) 466
Bsp1720I GCTNAGC 1 cut(s) 459
BspACI CCGC 1 cut(s) 115
BspCNI CTCAG 3 cut(s) 102, 196, 451
BssMI GATC 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 5 cut(s) 110, 121, 183, 276, 459
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 469
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 3 cut(s) 95, 115, 281
BstNI CCWGG 1 cut(s) 344
BstPAI GACNNNNGTC 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 311
CfoI GCGC 1 cut(s) 120
CseI GACGC 2 cut(s) 317, 409
CviAII CATG 2 cut(s) 206, 470
DdeI CTNAG 5 cut(s) 110, 121, 183, 276, 459
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco57I CTGAAG 4 cut(s) 44, 102, 234, 422
EcoRII CCWGG 1 cut(s) 342
FaeI CATG 2 cut(s) 209, 473
FatI CATG 2 cut(s) 205, 469
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 121
HgaI GACGC 2 cut(s) 317, 409
HhaI GCGC 1 cut(s) 120
Hin1II CATG 2 cut(s) 209, 473
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 36, 290
HinfI GANTC 3 cut(s) 11, 125, 493
Hpy166II GTNNAC 2 cut(s) 307, 358
Hpy188I TCNGA 2 cut(s) 26, 397
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 307, 358
HpyAV CCTTC 2 cut(s) 364, 397
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 2 cut(s) 256, 486
HpyCH4V TGCA 8 cut(s) 31, 70, 132, 193, 316, 451, 506, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 115, 281
HpyF3I CTNAG 5 cut(s) 110, 121, 183, 276, 459
HpySE526I ACGT 2 cut(s) 256, 486
Hsp92II CATG 2 cut(s) 209, 473
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 1 cut(s) 466
LpnPI CCDG 6 cut(s) 47, 179, 329, 356, 413, 467
LweI GCATC 3 cut(s) 98, 180, 515
MaeI CTAG 1 cut(s) 8
MaeII ACGT 2 cut(s) 256, 486
MaeIII GTNAC 2 cut(s) 217, 521
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 3 cut(s) 50, 95, 278
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 3 cut(s) 198, 440, 526
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 6 cut(s) 105, 146, 202, 274, 346, 529
MseI TTAA 2 cut(s) 294, 443
MspA1I CMGCKG 2 cut(s) 109, 187
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 95, 115, 281
NdeII GATC 1 cut(s) 466
NlaIII CATG 2 cut(s) 209, 473
NmuCI GTSAC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 11, 125
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PshAI GACNNNNGTC 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PvuII CAGCTG 2 cut(s) 109, 187
SaqAI TTAA 2 cut(s) 294, 443
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 466
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 338
SfaNI GCATC 3 cut(s) 98, 180, 515
SmlI CTYRAG 1 cut(s) 408
SmoI CTYRAG 1 cut(s) 408
Sse9I AATT 3 cut(s) 198, 440, 526
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 2 cut(s) 259, 489
TaqI TCGA 1 cut(s) 366
TasI AATT 3 cut(s) 198, 440, 526
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 2 cut(s) 11, 125
Tru1I TTAA 2 cut(s) 294, 443
Tru9I TTAA 2 cut(s) 294, 443
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 17, 267, 315
TspRI CASTG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.