Rh7DG368000

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000316
Physical Location & Seq
Reverse (-)
49760261 .. 49761996
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG368000.1

Sequence Viewer

Length: 414 bp
ATGAAGGGTCTAGATAAAAGAAGAGAAGGGATCATGAAGAACAAGAAGAAGAAGAGGGTGGAGGAGGAAGACAAGGATTCAGAGGATTGGTGCTTCTGCTGCTATGATGGTGGAGATCTTATGATTTGCGACCACAAGAGTTGCTTAAAAGTGTATCATCCAGGATGCGTAGGAAAAAAGAAAAACTCCATGTACTCTGGAAAGCGCTGGACTTGTAGTAGGCATTCTTGTGTAGTGTGCTCTGGTACCTCAAGGTTTTATTGCCTTTGTTGTCCACATGCATTATGTAGAGATTGCATAGGTGCTTCTGAACCTGCACTACTAAGGGGGAAGAATGGCTTGTGCAAGAGCTGTGTAAAGCGTATTCTGCTGGCAAAAGAAAACTCAGAATATGGTTTAGAGGGAGTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

137

Amino Acids

15.43

Weight (kDa)

8.92

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 30 - 75 5.1e-06 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AclWI GGATC 1 cut(s) 38
AfaI GTAC 2 cut(s) 194, 247
AfeI AGCGCT 1 cut(s) 206
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
Alw21I GWGCWC 1 cut(s) 242
AlwI GGATC 1 cut(s) 38
Aor51HI AGCGCT 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 322
BglII AGATCT 1 cut(s) 115
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 157, 170
BseMII CTCAG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 300
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 30, 115
BspCNI CTCAG 1 cut(s) 398
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 245
BssMI GATC 2 cut(s) 30, 115
Bst2UI CCWGG 1 cut(s) 162
Bst6I CTCTTC 2 cut(s) 16, 47
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 323, 385
BstF5I GGATG 2 cut(s) 157, 170
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 2 cut(s) 33, 118
BstMBI GATC 2 cut(s) 30, 115
BstMWI GCNNNNNNNGC 2 cut(s) 99, 367
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtsCI GGATG 2 cut(s) 157, 170
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 193, 246
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 3 cut(s) 34, 190, 278
CviJI RGCY 2 cut(s) 339, 351
CviKI_1 RGCY 2 cut(s) 339, 351
CviQI GTAC 2 cut(s) 193, 246
DdeI CTNAG 2 cut(s) 323, 385
DpnI GATC 2 cut(s) 32, 117
DpnII GATC 2 cut(s) 30, 115
Eam1104I CTCTTC 2 cut(s) 16, 47
EarI CTCTTC 2 cut(s) 16, 47
Eco47III AGCGCT 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 283
FaeI CATG 3 cut(s) 37, 193, 281
FaiI YATR 8 cut(s) 35, 105, 122, 191, 279, 286, 299, 393
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 323, 355
FatI CATG 3 cut(s) 33, 189, 277
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 2 cut(s) 144, 177
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 208
HhaI GCGC 1 cut(s) 207
Hin1II CATG 3 cut(s) 37, 193, 281
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 82, 310, 388
Hpy188III TCNNGA 3 cut(s) 11, 34, 198
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 281, 297, 317, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 367
HpyF3I CTNAG 2 cut(s) 323, 385
Hsp92II CATG 3 cut(s) 37, 193, 281
HspAI GCGC 1 cut(s) 205
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 2 cut(s) 30, 115
LpnPI CCDG 7 cut(s) 147, 174, 183, 193, 228, 327, 356
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 11
MalI GATC 2 cut(s) 32, 117
MboI GATC 2 cut(s) 30, 115
MboII GAAGA 7 cut(s) 33, 49, 58, 61, 64, 80, 343
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 242
MnlI CCTC 6 cut(s) 48, 55, 58, 76, 259, 394
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 2 cut(s) 146, 412
MslI CAYNNNNRTG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 99, 367
NdeII GATC 2 cut(s) 30, 115
NlaIII CATG 3 cut(s) 37, 193, 281
NlaIV GGNNCC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 281
PagI TCATGA 1 cut(s) 33
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 303, 335
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 194, 247
RsaNI GTAC 2 cut(s) 193, 246
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 146, 412
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 2 cut(s) 30, 115
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 242
SetI ASST 5 cut(s) 251, 257, 304, 316, 353
SfaNI GCATC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 160
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 146, 412
Tru9I TTAA 2 cut(s) 146, 412
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 17, 50
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.