RchiOBHm_Chr6g0258581

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000316
Physical Location & Seq
Reverse (-)
13935015 .. 13939436
4422 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23184

Sequence Viewer

Length: 882 bp
ATGGAAGATGAAACTAGAATCTGGGCAAGCAACTTCTTCAGGTTTTGCACAGAAAGACTGAAGAAGCATCTGTGCCTACTAAACAGAGGTGGCAAAAATGTGAATAATACAGCAACTCAGCTGATGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGAGCTATGTGCTGTATATGAACATCAAATAGAAGAGTTTATGGGATGGCTGAGGAGGCTGAAAAGCTTAAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAAGAGAAAGAGGTTGACAGCTTCGAGAAGGATTTAGATATAACAGACCTGTCTGACCTCAAGGCTCAAGTAGTCAGCGTCAGTAGTATGGTTGAACAATTAAGATTGCACAAGGCTGAGCTTGATCATGGGAAGTTGCAGGATGTTAGGAGTCAGTACACTGCATCTGTTGTGAGTAGTTACAAGTTAGTGGAGGACATCAGTCCATCTGCATCAGAAAATTCCACAGTTGTAACATCTAAAACTGCATCTCCAGTTTGCTTCTCATATAGTAAGAATTCTTTGTGCAAGGCGATGAAATACAAATGTCGATCCAAGGGTGGAAGCTGTGGTGACTCATGTGGCTGTGCAGTATCTAAGTGCAGCAATAGGAAAGCAGTCCCAATCAAGTCGAGTGACTCGCCAGTATCAGAGATTTCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTAAAGGTGCAATGCTACTTCAGAGTACACTAGTTCAGAAGGCTGCTGAACTAGCAGGGAACTTTGGGAACATATTGGTATACTTCATTACCTTTTCAATTTCCACTTTATATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.46

Weight (kDa)

6.03

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 843
AclWI GGATC 1 cut(s) 591
AcsI RAATTY 2 cut(s) 505, 562
AcuI CTGAAG 4 cut(s) 22, 80, 168, 767
AfaI GTAC 2 cut(s) 443, 790
AgsI TTSAA 4 cut(s) 166, 380, 726, 861
AhlI ACTAGT 1 cut(s) 793
AluBI AGCT 6 cut(s) 121, 172, 234, 306, 406, 612
AluI AGCT 6 cut(s) 121, 172, 234, 306, 406, 612
Alw21I GWGCWC 1 cut(s) 281
AlwI GGATC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 648, 806
ApoI RAATTY 2 cut(s) 505, 562
AsuHPI GGTGA 1 cut(s) 629
Bbv12I GWGCWC 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 660, 793
BccI CCATC 2 cut(s) 207, 499
BclI TGATCA 1 cut(s) 409
BcuI ACTAGT 1 cut(s) 793
BfaI CTAG 3 cut(s) 15, 794, 815
BisI GCNGC 2 cut(s) 649, 807
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 2 cut(s) 650, 808
BmsI GCATC 5 cut(s) 76, 114, 458, 506, 542
BoxI GACNNNNGTC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 329, 336
BsaJI CCNNGG 1 cut(s) 600
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bse1I ACTGG 3 cut(s) 539, 689, 732
Bse3DI GCAATG 1 cut(s) 780
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 2 cut(s) 218, 433
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 3 cut(s) 131, 209, 393
BseNI ACTGG 3 cut(s) 539, 689, 732
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 660, 793
BsgI GTGCAG 2 cut(s) 654, 667
BsiHKAI GWGCWC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 409, 596
Bsp1720I GCTNAGC 1 cut(s) 402
BspCNI CTCAG 3 cut(s) 130, 210, 394
BspPI GGATC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 3 cut(s) 539, 689, 732
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 2 cut(s) 409, 596
BssNAI GTATAC 1 cut(s) 844
BssT1I CCWWGG 1 cut(s) 600
Bst1107I GTATAC 1 cut(s) 844
Bst4CI ACNGT 2 cut(s) 514, 742
Bst6I CTCTTC 2 cut(s) 195, 740
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 5 cut(s) 117, 218, 402, 642, 879
BstF5I GGATG 2 cut(s) 218, 433
BstKTI GATC 2 cut(s) 412, 599
BstMBI GATC 2 cut(s) 409, 596
BstMWI GCNNNNNNNGC 2 cut(s) 223, 815
BstPAI GACNNNNGTC 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 660, 793
BstZ17I GTATAC 1 cut(s) 844
BtgZI GCGATG 1 cut(s) 593
BtsCI GGATG 2 cut(s) 218, 433
BtsI GCAGTG 2 cut(s) 254, 444
BtsIMutI CAGTG 4 cut(s) 254, 444, 739, 747
Cac8I GCNNGC 1 cut(s) 28
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 442, 789
CviAII CATG 4 cut(s) 140, 282, 413, 624
CviQI GTAC 2 cut(s) 442, 789
DdeI CTNAG 5 cut(s) 117, 218, 402, 642, 879
DpnI GATC 2 cut(s) 411, 598
DpnII GATC 2 cut(s) 409, 596
Eam1104I CTCTTC 2 cut(s) 195, 740
EarI CTCTTC 2 cut(s) 195, 740
Eco130I CCWWGG 1 cut(s) 600
Eco57I CTGAAG 4 cut(s) 22, 80, 168, 767
EcoRI GAATTC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 4 cut(s) 143, 285, 416, 627
FaqI GGGAC 1 cut(s) 650
FatI CATG 4 cut(s) 139, 281, 412, 623
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 2 cut(s) 649, 807
FokI GGATG 2 cut(s) 225, 440
Fsp4HI GCNGC 2 cut(s) 649, 807
FspBI CTAG 3 cut(s) 15, 794, 815
GluI GCNGC 2 cut(s) 649, 807
GsuI CTGGAG 1 cut(s) 522
HgaI GACGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 143, 285, 416, 627
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 4 cut(s) 18, 436, 620, 683
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 4 cut(s) 301, 444, 791, 844
Hpy188I TCNGA 6 cut(s) 340, 502, 697, 717, 786, 801
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 4 cut(s) 301, 444, 791, 844
HpyAV CCTTC 2 cut(s) 307, 796
HpyCH4III ACNGT 2 cut(s) 514, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 815
HpyF3I CTNAG 5 cut(s) 117, 218, 402, 642, 879
Hsp92II CATG 4 cut(s) 143, 285, 416, 627
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 2 cut(s) 409, 596
LpnPI CCDG 9 cut(s) 7, 25, 113, 347, 410, 552, 702, 745, 804
Lsp1109I GCAGC 2 cut(s) 660, 793
LweI GCATC 5 cut(s) 76, 114, 458, 506, 542
MaeI CTAG 3 cut(s) 15, 794, 815
MaeIII GTNAC 5 cut(s) 151, 464, 517, 617, 680
MalI GATC 2 cut(s) 411, 598
MboI GATC 2 cut(s) 409, 596
MboII GAAGA 5 cut(s) 17, 28, 73, 212, 757
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 5 cut(s) 132, 383, 505, 562, 861
MlyI GAGTC 3 cut(s) 445, 614, 677
MnlI CCTC 9 cut(s) 80, 136, 213, 216, 244, 289, 353, 472, 751
MseI TTAA 2 cut(s) 236, 386
MspA1I CMGCKG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 223, 815
NdeII GATC 2 cut(s) 409, 596
NlaIII CATG 4 cut(s) 143, 285, 416, 627
NmuCI GTSAC 3 cut(s) 151, 617, 680
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 650, 808
PleI GAGTC 3 cut(s) 444, 614, 677
PpsI GAGTC 3 cut(s) 444, 614, 677
PshAI GACNNNNGTC 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 2 cut(s) 443, 790
RsaNI GTAC 2 cut(s) 442, 789
SaqAI TTAA 2 cut(s) 236, 386
SatI GCNGC 2 cut(s) 649, 807
Sau3AI GATC 2 cut(s) 409, 596
SchI GAGTC 3 cut(s) 445, 614, 677
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 5 cut(s) 76, 114, 458, 506, 542
SmlI CTYRAG 2 cut(s) 344, 351
SmoI CTYRAG 2 cut(s) 344, 351
SpeI ACTAGT 1 cut(s) 793
Sse9I AATT 5 cut(s) 132, 383, 505, 562, 861
SspMI CTAG 3 cut(s) 15, 794, 815
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 2 cut(s) 514, 742
TaqI TCGA 3 cut(s) 309, 595, 677
TasI AATT 5 cut(s) 132, 383, 505, 562, 861
TatI WGTACW 2 cut(s) 441, 788
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 236, 386
Tru9I TTAA 2 cut(s) 236, 386
TscAI CASTG 4 cut(s) 261, 451, 739, 747
TseFI GTSAC 3 cut(s) 151, 617, 680
TseI GCWGC 2 cut(s) 648, 806
Tsp45I GTSAC 3 cut(s) 151, 617, 680
TspDTI ATGAA 5 cut(s) 24, 201, 258, 596, 838
TspRI CASTG 4 cut(s) 261, 451, 739, 747
XapI RAATTY 2 cut(s) 505, 562
XmiI GTMKAC 1 cut(s) 843
XspI CTAG 3 cut(s) 15, 794, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.