Rorug07G0230300

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000316
Physical Location & Seq
Reverse (-)
21013727 .. 21014332
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0230300.1

Sequence Viewer

Length: 606 bp
ATGCAAACGACCCCAGTGACGACGTCGGAAAAGATTCCATTCGAGGAGGAAGGTATTTGCCAGAATTCCATACCCTATAGCAGCGAACCCCCCCCAACCCTAACAGAGCCGCTCCACTATATGCTTCTCAAAATGAGGTGTTCCTTCCTTGTCATTTTTCTCATGCTCTTTCACAGCACAATCAGTGATGATTTGATCCAACAATATTGCAAGAAAGCCGCAGATCACGAACCATCTTTGAACTACGACTTTTGTGTCTCAACCATTGAGGCCAACCCTAAAAGCCATAGTGCAGACCTTGCAACACTTACAGCGATCGTACTTGACCTAGCCGGAGCCAAGGTGACCAGCATCAATTCACACATTCAAGAGCTAAAGAAGGATCCAAAAATTGACCAACCTGCATTACAAGACTACGAAGAAGTATACTCAGATGCCACTGGTAGCATGCAGGAAGCTACAAATTCCTTCAAGGCCAAGAATTATGAGTCGACTCTTAATACTCTTAGTGCTGCCTTGAATGCACCTGATCATACTTGTGAAACTGGATTTCAAGAGAGGAAAGTAGTGTCTCCCTTGAAGAAGGAGGACAATGACTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

201

Amino Acids

22.4

Weight (kDa)

4.77

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 64 - 196 9e-20 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AatII GACGTC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 112
AccI GTMKAC 2 cut(s) 426, 491
AciI CCGC 2 cut(s) 110, 219
AclWI GGATC 3 cut(s) 190, 377, 390
AcsI RAATTY 2 cut(s) 64, 463
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 321
AgsI TTSAA 6 cut(s) 241, 368, 472, 520, 554, 580
AluBI AGCT 2 cut(s) 373, 458
AluI AGCT 2 cut(s) 373, 458
Alw26I GTCTC 2 cut(s) 262, 576
AlwI GGATC 3 cut(s) 190, 377, 390
AoxI GGCC 2 cut(s) 270, 474
ApeKI GCWGC 2 cut(s) 81, 512
ApoI RAATTY 2 cut(s) 64, 463
Asp700I GAANNNNTTC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 355
BamHI GGATCC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 93, 499
BccI CCATC 1 cut(s) 241
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 262, 576
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 4 cut(s) 82, 110, 219, 513
BlsI GCNGC 4 cut(s) 83, 111, 220, 514
BmiI GGNNCC 2 cut(s) 337, 384
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 360, 424
BmuI ACTGGG 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bse1I ACTGG 3 cut(s) 14, 445, 550
BseDI CCNNGG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 3 cut(s) 14, 445, 550
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 93, 499
BsgI GTGCAG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 272, 476
BsiEI CGRYCG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 333
BsmAI GTCTC 2 cut(s) 262, 576
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 272, 476
Bsp143I GATC 5 cut(s) 195, 223, 315, 382, 529
BspACI CCGC 2 cut(s) 110, 219
BspANI GGCC 2 cut(s) 272, 476
BspCNI CTCAG 1 cut(s) 443
BspLI GGNNCC 2 cut(s) 337, 384
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 3 cut(s) 190, 377, 390
BsrBI CCGCTC 1 cut(s) 112
BsrI ACTGG 3 cut(s) 14, 445, 550
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 5 cut(s) 195, 223, 315, 382, 529
BssNAI GTATAC 1 cut(s) 427
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 427
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 2 cut(s) 430, 506
BstEII GGTNACC 1 cut(s) 343
BstKTI GATC 5 cut(s) 198, 226, 318, 385, 532
BstMAI GTCTC 2 cut(s) 262, 576
BstMBI GATC 5 cut(s) 195, 223, 315, 382, 529
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 299, 521
BstNSI RCATGY 1 cut(s) 451
BstPI GGTNACC 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 93, 499
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZ17I GTATAC 1 cut(s) 427
BsuRI GGCC 2 cut(s) 272, 476
BtsIMutI CAGTG 3 cut(s) 21, 190, 438
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 320
CviAII CATG 2 cut(s) 163, 448
CviJI RGCY 9 cut(s) 109, 218, 272, 285, 332, 338, 373, 458, 476
CviKI_1 RGCY 9 cut(s) 109, 218, 272, 285, 332, 338, 373, 458, 476
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 2 cut(s) 430, 506
DpnI GATC 5 cut(s) 197, 225, 317, 384, 531
DpnII GATC 5 cut(s) 195, 223, 315, 382, 529
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 2 cut(s) 166, 451
FatI CATG 2 cut(s) 162, 447
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 2 cut(s) 426, 491
Fnu4HI GCNGC 4 cut(s) 82, 110, 219, 513
Fsp4HI GCNGC 4 cut(s) 82, 110, 219, 513
FspBI CTAG 1 cut(s) 329
GluI GCNGC 4 cut(s) 82, 110, 219, 513
HaeIII GGCC 2 cut(s) 272, 476
HapII CCGG 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 2 cut(s) 166, 451
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 34, 488, 493
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 427, 492
Hpy188I TCNGA 2 cut(s) 28, 433
Hpy188III TCNNGA 3 cut(s) 227, 368, 554
Hpy8I GTNNAC 2 cut(s) 427, 492
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 5 cut(s) 44, 154, 373, 478, 577
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 7 cut(s) 4, 210, 293, 302, 404, 451, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 521
HpyF3I CTNAG 2 cut(s) 430, 506
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 166, 451
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 5 cut(s) 195, 223, 315, 382, 529
LmnI GCTCC 2 cut(s) 117, 335
LpnPI CCDG 9 cut(s) 27, 74, 346, 361, 414, 426, 437, 531, 540
Lsp1109I GCAGC 2 cut(s) 93, 499
LweI GCATC 2 cut(s) 360, 424
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 16, 343
MalI GATC 5 cut(s) 197, 225, 317, 384, 531
MbiI CCGCTC 1 cut(s) 112
MboI GATC 5 cut(s) 195, 223, 315, 382, 529
MboII GAAGA 2 cut(s) 431, 592
MflI RGATCY 1 cut(s) 382
MluCI AATT 5 cut(s) 64, 355, 390, 463, 481
MlyI GAGTC 2 cut(s) 487, 497
MmeI TCCRAC 2 cut(s) 6, 223
MnlI CCTC 6 cut(s) 37, 40, 129, 262, 552, 580
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 2 cut(s) 498, 604
MslI CAYNNNNRTG 1 cut(s) 537
MspI CCGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 526
MwoI GCNNNNNNNGC 2 cut(s) 299, 521
NdeII GATC 5 cut(s) 195, 223, 315, 382, 529
NlaIII CATG 2 cut(s) 166, 451
NlaIV GGNNCC 2 cut(s) 337, 384
NmuCI GTSAC 2 cut(s) 16, 343
NspI RCATGY 1 cut(s) 451
PaeI GCATGC 1 cut(s) 451
PctI GAATGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 34
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 4 cut(s) 83, 111, 220, 514
Ple19I CGATCG 1 cut(s) 318
PleI GAGTC 2 cut(s) 487, 496
PpsI GAGTC 2 cut(s) 487, 496
PspEI GGTNACC 1 cut(s) 343
PspN4I GGNNCC 2 cut(s) 337, 384
PsuI RGATCY 1 cut(s) 382
PsyI GACNNNGTC 1 cut(s) 22
PvuI CGATCG 1 cut(s) 318
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 537
SalI GTCGAC 1 cut(s) 490
SaqAI TTAA 2 cut(s) 498, 604
SatI GCNGC 4 cut(s) 82, 110, 219, 513
Sau3AI GATC 5 cut(s) 195, 223, 315, 382, 529
SchI GAGTC 2 cut(s) 487, 497
SfaNI GCATC 2 cut(s) 360, 424
SfcI CTRYAG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 537
SphI GCATGC 1 cut(s) 451
Sse9I AATT 5 cut(s) 64, 355, 390, 463, 481
SsiI CCGC 2 cut(s) 110, 219
SspI AATATT 1 cut(s) 206
SspMI CTAG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 339
TaiI ACGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 42, 491
TasI AATT 5 cut(s) 64, 355, 390, 463, 481
TauI GCSGC 2 cut(s) 112, 221
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 2 cut(s) 498, 604
Tru9I TTAA 2 cut(s) 498, 604
TscAI CASTG 3 cut(s) 21, 190, 445
TseFI GTSAC 2 cut(s) 16, 343
TseI GCWGC 2 cut(s) 81, 512
Tsp45I GTSAC 2 cut(s) 16, 343
TspRI CASTG 3 cut(s) 21, 190, 445
Tth111I GACNNNGTC 1 cut(s) 22
XapI RAATTY 2 cut(s) 64, 463
XceI RCATGY 1 cut(s) 451
XmiI GTMKAC 2 cut(s) 426, 491
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 329
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.