pycom08g19280

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000316
Physical Location & Seq
Reverse (-)
19307923 .. 19312447
4525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19280.4

Sequence Viewer

Length: 1314 bp
ATGAAGATGCAGAAGAGCAAGGAGGAGGAAGAAGAGAAGATAACAAACAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGCAGAAGAAGATTGGTGCTTCGTCTGCAAAGATGGTGGAGACCTCATGTTATGCGACTACCCGGGCTGCTTAAAAGTATATCATGCTCGATGCGTGGGCAAAAAGAAATCCTTCGCTGGGGCGGGAAAGCGCTGGATTTGTAGGATGCATTCTTGTGCATTGTGCCTTGGCACCCCAAAGTTTTACTGCTTCTGTTGTCCGAATTCAGCATGTCGACATTGCATAAGCGGTTCTAAGTTTACACAGGTTAGAGGGAAGAAAGGGTTTTGCAAGGAGTGTTTGGAGCTTATTCTACTGGCAGAGCAAAACTCAGAATATGGTTTAAATGGAGAAAAAATAGACTTCAAGGATCGAGATACATTTGAGTGCCTATTTAAAGAATATTGGGAAATCATAAAGGAAAACGAAGGTTTGACTTTAGATGATGTCTATTCCGCAGATTTACTGTTAAAGAGGGGAGAAAATAAAACATGCAGGTTTGGTTCTGTAAAAGCTGGTGAGACTGAAGAAGCTTTTGACCTGATATCTGATAGTGACAATTCAGACACGGAATTTCAGAGACCAATGGGAAAAAGGAAGGTGCAAGAGTATATCGGATGGGCATCCAAAGCTCTTATTGAGTTCCTGCGATCTATTGGTATAGATACAACCAACAAGTTATCGCAGTATGATGTGGATTCAATCATCTATGATTATATCAAAGAGAGAAACCTTTTTGATCCAATAAAGAAGAAAAAGGTTATATGTGATGAGAAGCTTTATTCTATTTTTCGAAAGAAGTCCCTGGATAGGATAAAAATATATGGTCTTCTGGGGGAACATATGACCGAGAACTTGGTTATATCGGATGAAGATGATAGTGAGCTGGAAGACAAGAAGAAAGATACAGTGATAGCAAGCAAGAAGCGAAGAGAGAGCTCAGGCGTAGCATCTATTGAAAAGGAAGCGAGTCCTAGCATCCAGAAAAGTTGTTTTGCATCCATAGTTCCTGAAAATATCAAGCTTGTCTACTTAAGGAGGAGTTTAGTGGAGGAGTTCTTGAAGCAGCCTGAAAATTCTGATAGCAAGCTACTGGGAACTTTTGTGAGAGTTAAAAATGATGCCAGGCTTCGTCTGACAAATTCTCACCAACTTTTACAAGTTGAAGGTATTGTTTTTTGGAAATATATAATCTGTTATTGTGTTAATAATGTCAGATTGGAAAAATTGTTAGCCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

438

Amino Acids

50.47

Weight (kDa)

5.37

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 263
AccI GTMKAC 2 cut(s) 307, 1101
AciI CCGC 3 cut(s) 215, 321, 528
AclWI GGATC 2 cut(s) 450, 806
AcsI RAATTY 4 cut(s) 295, 644, 1147, 1213
AcuI CTGAAG 1 cut(s) 618
AfeI AGCGCT 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 210, 882
AflII CTTAAG 1 cut(s) 1105
AgsI TTSAA 5 cut(s) 439, 774, 1031, 1135, 1238
AjnI CCWGG 2 cut(s) 876, 1196
AluBI AGCT 9 cut(s) 379, 587, 605, 704, 850, 958, 1011, 1096, 1162
AluI AGCT 9 cut(s) 379, 587, 605, 704, 850, 958, 1011, 1096, 1162
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 3 cut(s) 126, 587, 646
AlwI GGATC 2 cut(s) 450, 806
Ama87I CYCGRG 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 159, 1138
ApoI RAATTY 4 cut(s) 295, 644, 1147, 1213
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 225
AsuC2I CCSGG 2 cut(s) 155, 156
AsuHPI GGTGA 2 cut(s) 602, 1211
AsuII TTCGAA 1 cut(s) 865
AvaI CYCGRG 1 cut(s) 154
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 1013
BbsI GAAGAC 2 cut(s) 893, 969
Bbv12I GWGCWC 1 cut(s) 1013
BbvI GCAGC 2 cut(s) 146, 1150
BccI CCATC 2 cut(s) 119, 684
BciT130I CCWGG 2 cut(s) 878, 1198
BcnI CCSGG 2 cut(s) 155, 156
BcoDI GTCTC 3 cut(s) 126, 587, 646
BfaI CTAG 1 cut(s) 1047
BfoI RGCGCY 1 cut(s) 226
BfrI CTTAAG 1 cut(s) 1105
BfuAI ACCTGC 1 cut(s) 558
BisI GCNGC 2 cut(s) 160, 1139
BlsI GCNGC 2 cut(s) 161, 1140
Bme1390I CCNGG 4 cut(s) 155, 156, 878, 1198
BmeT110I CYCGRG 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 4 cut(s) 155, 156, 878, 1198
BmrI ACTGGG 1 cut(s) 1175
BmsI GCATC 8 cut(s) 82, 173, 228, 704, 1031, 1059, 1079, 1183
BmuI ACTGGG 1 cut(s) 1175
BpiI GAAGAC 2 cut(s) 893, 969
BplI GAGNNNNNCTC 2 cut(s) 386, 418
Bpu10I CCTNAGC 1 cut(s) 1012
Bpu14I TTCGAA 1 cut(s) 865
BpuMI CCSGG 2 cut(s) 155, 156
BsaBI GATNNNNATC 1 cut(s) 694
BsaI GGTCTC 2 cut(s) 126, 646
BsaJI CCNNGG 3 cut(s) 154, 259, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 882
Bse1I ACTGG 2 cut(s) 393, 1170
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 694
BseBI CCWGG 2 cut(s) 878, 1198
BseDI CCNNGG 3 cut(s) 154, 259, 876
BseGI GGATG 6 cut(s) 243, 695, 695, 946, 1050, 1070
BseJI GATNNNNATC 1 cut(s) 694
BseLI CCNNNNNNNGG 2 cut(s) 210, 882
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 417, 1026
BseNI ACTGG 2 cut(s) 393, 1170
BseXI GCAGC 2 cut(s) 146, 1150
BseYI CCCAGC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 1013
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 2 cut(s) 210, 882
BsmAI GTCTC 3 cut(s) 126, 587, 646
BsmFI GGGAC 1 cut(s) 859
BsmI GAATGC 1 cut(s) 241
Bso31I GGTCTC 2 cut(s) 126, 646
BsoBI CYCGRG 1 cut(s) 154
Bsp119I TTCGAA 1 cut(s) 865
Bsp1286I GDGCHC 1 cut(s) 1013
Bsp143I GATC 3 cut(s) 442, 722, 811
BspACI CCGC 3 cut(s) 215, 321, 528
BspCNI CTCAG 2 cut(s) 416, 1025
BspLI GGNNCC 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 2 cut(s) 450, 806
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 865
BspT107I GGYRCC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 1105
BspTNI GGTCTC 2 cut(s) 126, 646
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 2 cut(s) 393, 1170
BssECI CCNNGG 3 cut(s) 154, 259, 876
BssMI GATC 3 cut(s) 442, 722, 811
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 878, 1198
Bst4CI ACNGT 2 cut(s) 540, 982
Bst6I CTCTTC 3 cut(s) 8, 27, 997
BstAFI CTTAAG 1 cut(s) 1105
BstBI TTCGAA 1 cut(s) 865
BstC8I GCNNGC 2 cut(s) 991, 1160
BstDEI CTNAG 3 cut(s) 327, 403, 1012
BstF5I GGATG 6 cut(s) 243, 695, 695, 946, 1050, 1070
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 445, 725, 814
BstMAI GTCTC 3 cut(s) 126, 587, 646
BstMBI GATC 3 cut(s) 442, 722, 811
BstMWI GCNNNNNNNGC 2 cut(s) 117, 701
BstNI CCWGG 2 cut(s) 878, 1198
BstNSI RCATGY 2 cut(s) 306, 567
BstSCI CCNGG 4 cut(s) 153, 154, 876, 1196
BstV1I GCAGC 2 cut(s) 146, 1150
BstV2I GAAGAC 2 cut(s) 893, 969
BtsCI GGATG 6 cut(s) 243, 695, 695, 946, 1050, 1070
BtsIMutI CAGTG 1 cut(s) 987
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 2 cut(s) 991, 1160
CfoI GCGC 1 cut(s) 225
Cfr9I CCCGGG 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 4 cut(s) 139, 176, 303, 564
DdeI CTNAG 3 cut(s) 327, 403, 1012
DpnI GATC 3 cut(s) 444, 724, 813
DpnII GATC 3 cut(s) 442, 722, 811
DraI TTTAAA 2 cut(s) 417, 469
Eam1104I CTCTTC 3 cut(s) 8, 27, 997
EarI CTCTTC 3 cut(s) 8, 27, 997
Ecl136II GAGCTC 1 cut(s) 1011
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 1013
Eco31I GGTCTC 2 cut(s) 126, 646
Eco32I GATATC 1 cut(s) 618
Eco47III AGCGCT 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 1011
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 1011
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 876, 1196
EcoRV GATATC 1 cut(s) 618
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 4 cut(s) 142, 179, 306, 567
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 859
FatI CATG 4 cut(s) 138, 175, 302, 563
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 1 cut(s) 915
FblI GTMKAC 2 cut(s) 307, 1101
Fnu4HI GCNGC 2 cut(s) 160, 1139
FokI GGATG 6 cut(s) 250, 682, 702, 953, 1037, 1057
FriOI GRGCYC 1 cut(s) 1013
Fsp4HI GCNGC 2 cut(s) 160, 1139
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 160, 1139
GsaI CCCAGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 226
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 225
Hin1II CATG 4 cut(s) 142, 179, 306, 567
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HindIII AAGCTT 3 cut(s) 603, 848, 1094
HinfI GANTC 2 cut(s) 770, 1042
HpaII CCGG 1 cut(s) 155
HphI GGTGA 2 cut(s) 602, 1211
Hpy166II GTNNAC 3 cut(s) 308, 333, 1102
Hpy188III TCNNGA 4 cut(s) 446, 1054, 1082, 1132
Hpy8I GTNNAC 3 cut(s) 308, 333, 1102
HpyAV CCTTC 4 cut(s) 214, 494, 664, 1232
HpyCH4III ACNGT 2 cut(s) 540, 982
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 701
HpyF3I CTNAG 3 cut(s) 327, 403, 1012
Hsp92II CATG 4 cut(s) 142, 179, 306, 567
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 442, 722, 811
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 2 cut(s) 146, 1150
LweI GCATC 8 cut(s) 82, 173, 228, 704, 1031, 1059, 1079, 1183
MaeI CTAG 1 cut(s) 1047
MaeIII GTNAC 1 cut(s) 626
MalI GATC 3 cut(s) 444, 724, 813
MboI GATC 3 cut(s) 442, 722, 811
MhlI GDGCHC 1 cut(s) 1013
MluCI AATT 6 cut(s) 295, 631, 644, 1147, 1213, 1298
MlyI GAGTC 1 cut(s) 1051
Mph1103I ATGCAT 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 7 cut(s) 164, 416, 468, 542, 1106, 1185, 1278
MslI CAYNNNNRTG 2 cut(s) 246, 457
MspCI CTTAAG 1 cut(s) 1105
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 4 cut(s) 155, 156, 878, 1198
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 2 cut(s) 878, 1198
MwoI GCNNNNNNNGC 2 cut(s) 117, 701
NciI CCSGG 2 cut(s) 155, 156
NdeI CATATG 1 cut(s) 915
NdeII GATC 3 cut(s) 442, 722, 811
NlaIII CATG 4 cut(s) 142, 179, 306, 567
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 2 cut(s) 306, 567
NspV TTCGAA 1 cut(s) 865
PciSI GCTCTTC 1 cut(s) 8
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 2 cut(s) 161, 1140
PleI GAGTC 1 cut(s) 1050
PpsI GAGTC 1 cut(s) 1050
Psp124BI GAGCTC 1 cut(s) 1013
Psp6I CCWGG 2 cut(s) 876, 1196
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 876, 1196
PspN4I GGNNCC 1 cut(s) 265
RseI CAYNNNNRTG 2 cut(s) 246, 457
SacI GAGCTC 1 cut(s) 1013
SalI GTCGAC 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 7 cut(s) 164, 416, 468, 542, 1106, 1185, 1278
SatI GCNGC 2 cut(s) 160, 1139
Sau3AI GATC 3 cut(s) 442, 722, 811
SchI GAGTC 1 cut(s) 1051
ScrFI CCNGG 4 cut(s) 155, 156, 878, 1198
SduI GDGCHC 1 cut(s) 1013
SfaNI GCATC 8 cut(s) 82, 173, 228, 704, 1031, 1059, 1079, 1183
SfuI TTCGAA 1 cut(s) 865
SmaI CCCGGG 1 cut(s) 156
SmiMI CAYNNNNRTG 2 cut(s) 246, 457
SmlI CTYRAG 1 cut(s) 1105
SmoI CTYRAG 1 cut(s) 1105
Sse9I AATT 6 cut(s) 295, 631, 644, 1147, 1213, 1298
SsiI CCGC 3 cut(s) 215, 321, 528
SspI AATATT 1 cut(s) 476
SspMI CTAG 1 cut(s) 1047
SstI GAGCTC 1 cut(s) 1013
StyD4I CCNGG 4 cut(s) 153, 154, 876, 1196
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 540, 982
TaqI TCGA 4 cut(s) 181, 307, 445, 865
TaqII GACCGA 1 cut(s) 935
TasI AATT 6 cut(s) 295, 631, 644, 1147, 1213, 1298
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 7 cut(s) 164, 416, 468, 542, 1106, 1185, 1278
Tru9I TTAA 7 cut(s) 164, 416, 468, 542, 1106, 1185, 1278
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 2 cut(s) 159, 1138
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 2 cut(s) 17, 957
TspGWI ACGGA 1 cut(s) 656
TspMI CCCGGG 1 cut(s) 154
TspRI CASTG 1 cut(s) 987
Vha464I CTTAAG 1 cut(s) 1105
XapI RAATTY 4 cut(s) 295, 644, 1147, 1213
XceI RCATGY 2 cut(s) 306, 567
XmaI CCCGGG 1 cut(s) 154
XmiI GTMKAC 2 cut(s) 307, 1101
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 1047
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.