Rmu_sc0023858.1_g000001

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023858.1
OG0000316
Physical Location & Seq
Reverse (-)
208 .. 605
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023858.1_g000001.1.cds

Sequence Viewer

Length: 279 bp
atggctaaggaggctgaaaagcttaaagatgaagtagacgcactgcaacaagaaaggtcaaggtgctcattccaggagaaagaggttgacagcttcgagaaggatttagatataacagacctgtctgacctgaaggctcaagtagtcagcgtcagtggtatggttgaacaattaagattgcacaaggctgagcttgatcatgggaagtcgcaggttagtggagttgaattttggccatgctttgaactaactcatcttcaattggagcctgaattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.55

Weight (kDa)

4.61

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 152
AgsI TTSAA 4 cut(s) 167, 227, 245, 260
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 3 cut(s) 22, 93, 193
AluI AGCT 3 cut(s) 22, 93, 193
Alw21I GWGCWC 1 cut(s) 68
AoxI GGCC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 227
BalI TGGCCA 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 1 cut(s) 196
BfuAI ACCTGC 1 cut(s) 202
BlpI GCTNAGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 180
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 68
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 202
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 6, 189
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BsuRI GGCC 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 160
BveI ACCTGC 1 cut(s) 202
CseI GACGC 2 cut(s) 47, 139
CviAII CATG 2 cut(s) 200, 237
CviJI RGCY 9 cut(s) 5, 14, 22, 93, 137, 188, 193, 235, 268
CviKI_1 RGCY 9 cut(s) 5, 14, 22, 93, 137, 188, 193, 235, 268
DdeI CTNAG 2 cut(s) 6, 189
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 203, 240
FaiI YATR 4 cut(s) 113, 161, 201, 238
FatI CATG 2 cut(s) 199, 236
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 235
HgaI GACGC 2 cut(s) 47, 139
Hin1II CATG 2 cut(s) 203, 240
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 37, 88
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 37, 88
HpyAV CCTTC 2 cut(s) 94, 127
HpyCH4V TGCA 2 cut(s) 46, 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 6, 189
Hsp92II CATG 2 cut(s) 203, 240
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 59, 86, 134, 143, 197
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 248
MfeI CAATTG 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 235
MluCI AATT 4 cut(s) 170, 227, 260, 272
MluNI TGGCCA 1 cut(s) 235
MnlI CCTC 2 cut(s) 4, 76
Mox20I TGGCCA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 235
MseI TTAA 2 cut(s) 24, 173
Msp20I TGGCCA 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 203, 240
NlaIV GGNNCC 1 cut(s) 267
PfoI TCCNGGA 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 24, 173
Sau3AI GATC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 68
SetI ASST 9 cut(s) 24, 59, 65, 87, 95, 123, 132, 195, 216
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 4 cut(s) 170, 227, 260, 272
StyD4I CCNGG 1 cut(s) 72
TaqI TCGA 1 cut(s) 96
TasI AATT 4 cut(s) 170, 227, 260, 272
Tru1I TTAA 2 cut(s) 24, 173
Tru9I TTAA 2 cut(s) 24, 173
TscAI CASTG 2 cut(s) 48, 160
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 2 cut(s) 48, 160
XapI RAATTY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.