Rh7DG440500

Chromosome-associated kinesin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000316
Physical Location & Seq
Reverse (-)
62608934 .. 62614634
5701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG440500.1

Sequence Viewer

Length: 1122 bp
ATGCAATGTAAGATGAAACTAGAATCTGTGCAGTTCAGATTGCATAAAGCTTTGTTGGACAAGGAAGTTCTTCAGCTCAAGAAAGAGAGTAGGAAGAAAAAACATGAGATGCACAAGCTATTGGCCTCCAATCAAAGACTGAAGACTGTTTTGCGTCGAAAGACTGAAGAAGCATCTGTGGCTACTAAACAGCTGAGACGGCTCTTAGAATCTCGCAAGGCTTTGTTGCTAAAAAGAGGTGGCAAAAATGGGAATAATACAGCAACTCAGCTGGTGCAGGAAATTGACCATGAGGCTGAAGTCACAGAGCAGTTGAATGACCTATGTGCTATATATGAACGTCAAATAGAAGAGATGGTGGAGGAGGCTGAAAAGCTTAAAGATGAAGTAGAGGCACTGCAACAAGAAAAGTCAAGGTGCTCATGCCAGGAGAAAGAGGTTGACAGCTTTGAGAAGGATTTAGATATAACAGACCTGAAGGCTCAAGTAGTCAGCCTCAGTAGTATGGTTGAACAATTAAGATTGCGCAAGGCTGAGCTTGATCATGGGAAGTCACAGGGCATTAGGAGTCAGCATACTGCATCTGTTGGGAGCAGTTACAAGTTAGTGGAGGACATTAGTCCATCTGCATCAGAAAATTCCACAGTTGGAACATCTAAAACGGCAGCTCCAGTTTGCTGCTCATGCACTAAGAATTCTTTGTGCAAGACGATGAAATGCAAATGTCGATCCAAGGGTGGAAGCTGTGGTGCCTCATGTGGCTGTGCAGCATCCAAGTGCAGCAATAGGAAAGCAGTCCCAATTAAGTCGAGTGACTCGCCACTATCAGAGATTGCTAATGGCGTTCTGAATAGTTCAAACACCAGTGAAACAGTGAAGAGTAGCATAGAGGCTTCTGAAGGTGCAATGCTACTTCAGAGTGCACTAGTTCAGAAGCCTGCTGAACCGGAAGGGAACTTTGGAGCAATAAAGAAACCCTTAACTGAAATTGGGAACATATTGGTGAGTACAAATGCTGCAAAACCTGGCCCAAGAAAAAAGGGGAGAAAGCCAGCGATTCAGCTTGTTACTGTAGACCCAATTTCCTCAATGCCAGTAAATATGGAAGGAAATGACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

40.77

Weight (kDa)

9.05

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G33300
fragaria_vesca FvH4_3g26472 FvH4_5g30650 FvH4_5g30650 FvH4_5g30650 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35240 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250 FvH4_5g35250
malus_domestica MD08G1198100.v1.1 MD08G1222000.v1.1 MD15G1385400.v1.1 MD15G1440800.v1.1
prunus_persica Prupe.1G532100_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1 Prupe.1G559800_v2.0.a1
pyrus_communis pycom08g17030 pycom08g17040 pycom08g19270 pycom08g19280 pycom15g34550 pycom15g36860 pycom15g38860
rosa_chinensis RchiOBHm_Chr6g0258571 RchiOBHm_Chr6g0258581 RchiOBHm_Chr6g0258621 RchiOBHm_Chr7g0225511 RchiOBHm_Chr7g0230561 RchiOBHm_Chr7g0230571 RchiOBHm_Chr7g0236371 RchiOBHm_Chr7g0236391
rosa_laevigata RLG00000001080 RLG00000001810 RLG00000014605
rosa_multiflora Rmu_co8399019.1_g000001 Rmu_sc0002222.1_g000016 Rmu_sc0002449.1_g000032 Rmu_sc0003720.1_g000005 Rmu_sc0005578.1_g000003 Rmu_sc0011035.1_g000002 Rmu_sc0012681.1_g000001 Rmu_sc0023362.1_g000001 Rmu_sc0023858.1_g000001 Rmu_sc0029314.1_g000001
rosa_roxburghii Rroxscaffold_178G00437500 Rroxscaffold_178G00437540 Rroxscaffold_3G00225100 Rroxscaffold_3G00225110 Rroxscaffold_3G00225140 Rroxscaffold_3G00225170 Rroxscaffold_3G00225190 Rroxscaffold_3G00229880 Rroxscaffold_3G00233730 Rroxscaffold_7G00205760 Rroxscaffold_7G00205780 Rroxscaffold_7G00205820 Rroxscaffold_7G00205860
rosa_rugosa Rorug03G0221800 Rorug03G0270500 Rorug05G0313300 Rorug05G0582400 Rorug05G0582500 Rorug07G0230200.1 Rorug07G0230300 Rorug07G0230400 Rorug07G0295100 Rorug07G0296900
rosa_samantha Rh6AG098800 Rh6AG098900 Rh6AG184000 Rh6BG090700 Rh6BG090900 Rh6CG087500 Rh6CG087600 Rh6DG081800 Rh6DG082000 Rh7AG373100 Rh7AG412900 Rh7AG413000 Rh7AG451100 Rh7AG451200 Rh7BG364900 Rh7BG422800 Rh7BG422900 Rh7CG391400 Rh7CG431300 Rh7CG431400 Rh7CG469300 Rh7CG470800 Rh7CG471300 Rh7CG471400 Rh7DG367900 Rh7DG368000 Rh7DG375800 Rh7DG408800 Rh7DG440500 Rh7DG440600
rosa_wichuraiana Rw0G007810 Rw6G008570 Rw6G008580 Rw7G031720 Rw7G034090 Rw7G037500 Rw7G037510 Rw7G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 749
AccI GTMKAC 1 cut(s) 1074
AclWI GGATC 1 cut(s) 723
AcsI RAATTY 2 cut(s) 637, 694
AcuI CTGAAG 7 cut(s) 56, 161, 186, 318, 497, 899, 918
AfaI GTAC 1 cut(s) 1009
AgsI TTSAA 3 cut(s) 316, 512, 858
AhlI ACTAGT 1 cut(s) 925
AjnI CCWGG 2 cut(s) 426, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 942, 974
Alw21I GWGCWC 2 cut(s) 422, 925
Alw26I GTCTC 1 cut(s) 190
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 1 cut(s) 723
AoxI GGCC 2 cut(s) 123, 1027
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 5 cut(s) 665, 678, 767, 780, 1016
ApoI RAATTY 2 cut(s) 637, 694
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 1028
AsuHPI GGTGA 1 cut(s) 1015
BaeGI GKGCMC 1 cut(s) 925
BanI GGYRCC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 422, 925
BbvI GCAGC 5 cut(s) 665, 677, 779, 792, 1003
BccI CCATC 2 cut(s) 349, 631
BceAI ACGGC 2 cut(s) 215, 678
BciT130I CCWGG 2 cut(s) 428, 1026
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 190
BcuI ACTAGT 1 cut(s) 925
BfaI CTAG 2 cut(s) 20, 926
BfmI CTRYAG 1 cut(s) 1071
BisI GCNGC 5 cut(s) 666, 679, 768, 781, 1017
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 5 cut(s) 667, 680, 769, 782, 1018
Bme1390I CCNGG 2 cut(s) 428, 1026
BmgT120I GGNCC 1 cut(s) 1028
BmiI GGNNCC 1 cut(s) 751
BmrFI CCNGG 2 cut(s) 428, 1026
BmsI GCATC 5 cut(s) 99, 182, 590, 638, 779
BoxI GACNNNNGTC 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 654
Bpu1102I GCTNAGC 1 cut(s) 534
BpuEI CTTGAG 2 cut(s) 62, 468
BsaJI CCNNGG 1 cut(s) 732
BsaWI WCCGGW 1 cut(s) 946
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bse1I ACTGG 3 cut(s) 671, 864, 1094
Bse3DI GCAATG 2 cut(s) 11, 912
BseBI CCWGG 2 cut(s) 428, 1026
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 1 cut(s) 770
BseMI GCAATG 2 cut(s) 11, 912
BseMII CTCAG 4 cut(s) 185, 281, 511, 525
BseNI ACTGG 3 cut(s) 671, 864, 1094
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 5 cut(s) 665, 677, 779, 792, 1003
BsgI GTGCAG 4 cut(s) 50, 296, 786, 799
BshFI GGCC 2 cut(s) 125, 1029
BshNI GGYRCC 1 cut(s) 749
BsiHKAI GWGCWC 2 cut(s) 422, 925
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 1 cut(s) 782
BsmAI GTCTC 1 cut(s) 190
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 782
BsnI GGCC 2 cut(s) 125, 1029
Bsp1286I GDGCHC 2 cut(s) 422, 925
Bsp143I GATC 2 cut(s) 541, 728
Bsp1720I GCTNAGC 1 cut(s) 534
BspANI GGCC 2 cut(s) 125, 1029
BspCNI CTCAG 4 cut(s) 186, 280, 510, 526
BspLI GGNNCC 1 cut(s) 751
BspPI GGATC 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 749
BsrDI GCAATG 2 cut(s) 11, 912
BsrI ACTGG 3 cut(s) 671, 864, 1094
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 2 cut(s) 541, 728
BssT1I CCWWGG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 428, 1026
Bst4CI ACNGT 4 cut(s) 148, 646, 874, 1072
Bst6I CTCTTC 2 cut(s) 345, 872
BstC8I GCNNGC 2 cut(s) 939, 1053
BstDEI CTNAG 6 cut(s) 194, 205, 267, 497, 534, 690
BstF5I GGATG 1 cut(s) 770
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 2 cut(s) 544, 731
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 541, 728
BstMWI GCNNNNNNNGC 3 cut(s) 179, 199, 684
BstNI CCWGG 2 cut(s) 428, 1026
BstPAI GACNNNNGTC 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 426, 1024
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 925
BstV1I GCAGC 5 cut(s) 665, 677, 779, 792, 1003
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 125, 1029
BtsCI GGATG 1 cut(s) 770
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 3 cut(s) 395, 871, 879
Cac8I GCNNGC 2 cut(s) 939, 1053
CfoI GCGC 1 cut(s) 528
Cfr13I GGNCC 1 cut(s) 1028
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 1008
CviAII CATG 6 cut(s) 104, 290, 423, 545, 684, 756
CviQI GTAC 1 cut(s) 1008
DdeI CTNAG 6 cut(s) 194, 205, 267, 497, 534, 690
DpnI GATC 2 cut(s) 543, 730
DpnII GATC 2 cut(s) 541, 728
Eam1104I CTCTTC 2 cut(s) 345, 872
EarI CTCTTC 2 cut(s) 345, 872
Eco130I CCWWGG 1 cut(s) 732
Eco57I CTGAAG 7 cut(s) 56, 161, 186, 318, 497, 899, 918
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 2 cut(s) 426, 1024
EcoT14I CCWWGG 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 732
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 6 cut(s) 107, 293, 426, 548, 687, 759
FalI AAGNNNNNCTT 2 cut(s) 962, 994
FaqI GGGAC 1 cut(s) 782
FatI CATG 6 cut(s) 103, 289, 422, 544, 683, 755
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 5 cut(s) 666, 679, 768, 781, 1017
FokI GGATG 1 cut(s) 757
Fsp4HI GCNGC 5 cut(s) 666, 679, 768, 781, 1017
FspBI CTAG 2 cut(s) 20, 926
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 1 cut(s) 527
GluI GCNGC 5 cut(s) 666, 679, 768, 781, 1017
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 2 cut(s) 125, 1029
HapII CCGG 1 cut(s) 947
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 528
Hin1II CATG 6 cut(s) 107, 293, 426, 548, 687, 759
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 48, 374
HinfI GANTC 5 cut(s) 23, 209, 568, 815, 1057
HpaII CCGG 1 cut(s) 947
HphI GGTGA 1 cut(s) 1015
Hpy166II GTNNAC 3 cut(s) 442, 923, 1075
Hpy188I TCNGA 7 cut(s) 38, 634, 829, 849, 898, 918, 933
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 442, 923, 1075
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 5 cut(s) 448, 472, 893, 944, 1100
HpyCH4III ACNGT 4 cut(s) 148, 646, 874, 1072
HpyCH4IV ACGT 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 199, 684
HpyF3I CTNAG 6 cut(s) 194, 205, 267, 497, 534, 690
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 6 cut(s) 107, 293, 426, 548, 687, 759
HspAI GCGC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 541, 728
LmnI GCTCC 3 cut(s) 591, 673, 962
Lsp1109I GCAGC 5 cut(s) 665, 677, 779, 792, 1003
LweI GCATC 5 cut(s) 99, 182, 590, 638, 779
MaeI CTAG 2 cut(s) 20, 926
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 5 cut(s) 301, 552, 596, 812, 1066
MalI GATC 2 cut(s) 543, 730
MboI GATC 2 cut(s) 541, 728
MboII GAAGA 6 cut(s) 62, 106, 154, 179, 362, 889
MhlI GDGCHC 2 cut(s) 422, 925
MluCI AATT 7 cut(s) 282, 515, 637, 694, 801, 987, 1080
MlyI GAGTC 2 cut(s) 577, 809
MmeI TCCRAC 2 cut(s) 36, 628
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 4 cut(s) 378, 518, 804, 980
MslI CAYNNNNRTG 2 cut(s) 775, 1001
MspA1I CMGCKG 2 cut(s) 193, 271
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 2 cut(s) 428, 1026
MvaI CCWGG 2 cut(s) 428, 1026
MwoI GCNNNNNNNGC 3 cut(s) 179, 199, 684
NdeII GATC 2 cut(s) 541, 728
NlaIII CATG 6 cut(s) 107, 293, 426, 548, 687, 759
NlaIV GGNNCC 1 cut(s) 751
NmuCI GTSAC 3 cut(s) 301, 552, 812
NsbI TGCGCA 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 3 cut(s) 23, 209, 1057
PkrI GCNGC 5 cut(s) 667, 680, 769, 782, 1018
PleI GAGTC 2 cut(s) 576, 809
PpsI GAGTC 2 cut(s) 576, 809
PshAI GACNNNNGTC 1 cut(s) 618
Psp6I CCWGG 2 cut(s) 426, 1024
PspGI CCWGG 2 cut(s) 426, 1024
PspN4I GGNNCC 1 cut(s) 751
PspPI GGNCC 1 cut(s) 1028
PvuII CAGCTG 2 cut(s) 193, 271
RsaI GTAC 1 cut(s) 1009
RsaNI GTAC 1 cut(s) 1008
RseI CAYNNNNRTG 2 cut(s) 775, 1001
SaqAI TTAA 4 cut(s) 378, 518, 804, 980
SatI GCNGC 5 cut(s) 666, 679, 768, 781, 1017
Sau3AI GATC 2 cut(s) 541, 728
Sau96I GGNCC 1 cut(s) 1028
SchI GAGTC 2 cut(s) 577, 809
ScrFI CCNGG 2 cut(s) 428, 1026
SduI GDGCHC 2 cut(s) 422, 925
SfaNI GCATC 5 cut(s) 99, 182, 590, 638, 779
SfcI CTRYAG 1 cut(s) 1071
SmiMI CAYNNNNRTG 2 cut(s) 775, 1001
SmlI CTYRAG 2 cut(s) 77, 483
SmoI CTYRAG 2 cut(s) 77, 483
SpeI ACTAGT 1 cut(s) 925
Sse9I AATT 7 cut(s) 282, 515, 637, 694, 801, 987, 1080
SspMI CTAG 2 cut(s) 20, 926
StyD4I CCNGG 2 cut(s) 426, 1024
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 4 cut(s) 148, 646, 874, 1072
TaiI ACGT 1 cut(s) 343
TaqI TCGA 3 cut(s) 157, 727, 809
TasI AATT 7 cut(s) 282, 515, 637, 694, 801, 987, 1080
TatI WGTACW 1 cut(s) 1007
TfiI GAWTC 3 cut(s) 23, 209, 1057
Tru1I TTAA 4 cut(s) 378, 518, 804, 980
Tru9I TTAA 4 cut(s) 378, 518, 804, 980
TscAI CASTG 3 cut(s) 402, 871, 879
TseFI GTSAC 3 cut(s) 301, 552, 812
TseI GCWGC 5 cut(s) 665, 678, 767, 780, 1016
Tsp45I GTSAC 3 cut(s) 301, 552, 812
TspDTI ATGAA 4 cut(s) 29, 351, 399, 728
TspRI CASTG 3 cut(s) 402, 871, 879
VneI GTGCAC 1 cut(s) 921
XapI RAATTY 2 cut(s) 637, 694
XmiI GTMKAC 1 cut(s) 1074
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 20, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.