MD05G1353800.v1.1

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000724
Physical Location & Seq
Reverse (-)
47036342 .. 47036981
640 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1353800.v1.1.491

Sequence Viewer

Length: 561 bp
ATGAATGAGGAATGGAAAGACGTGAAGGAATACTTCGAGAATAATCCGGAAAAACTGCACTATAAAATGACAGTGGAGGGGGACACTGTATTTCACCTTGCGGGTTCTCTCAGCAGCAAATCACAAGGCACAGAAGTCCTCGAAATGTTAATCAATAAAATTTCAACCAGCCAGGACAAGAAACGCGCTCTGAGGGTTCCAAATAATTACGGAGACAATACTCTCCATGAGGTGAGTATGTCCGGCAATGAGGAAGCGGCAAAGTACTTGGTGAGCAACTTCAATGAACCTGTTCAGGAAGAGGTCATCATCAGTACTAGTACTACTGATAAACAGGCTTATGAGCAGAAAAGGGATTCGGAGAATGGTGGGCTGCAGCTGCTGGAGACTCGGAACTATTTAGGAGAGACTCCGCTCTTCAGGGCGGCTGCTCTCGGTCACACTGACTTGGTCAAGTTTTATGCTGGCAAACTACAAGAGGAGAATATTTGGAGGCACTTCCACAGAGATGACAAAATGTCCATTCTTCATATCGCAGTCATTGCGCAACATTTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

187

Amino Acids

21.35

Weight (kDa)

5.39

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 546
AccBSI CCGCTC 1 cut(s) 415
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 4 cut(s) 101, 257, 413, 425
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 3 cut(s) 266, 316, 322
AgsI TTSAA 2 cut(s) 165, 283
AhdI GACNNNNNGTC 1 cut(s) 517
AhlI ACTAGT 1 cut(s) 317
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
Alw26I GTCTC 3 cut(s) 207, 380, 401
AlwNI CAGNNNCTG 1 cut(s) 382
Aor13HI TCCGGA 1 cut(s) 46
ApeKI GCWGC 5 cut(s) 114, 373, 376, 379, 428
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 2 cut(s) 188, 547
AsuHPI GGTGA 3 cut(s) 86, 244, 283
BbvI GCAGC 5 cut(s) 126, 360, 366, 388, 415
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 3 cut(s) 207, 380, 401
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 7 cut(s) 115, 258, 374, 377, 380, 426, 429
BlsI GCNGC 7 cut(s) 116, 259, 375, 378, 381, 427, 430
BmcAI AGTACT 3 cut(s) 266, 316, 322
Bme1390I CCNGG 1 cut(s) 173
BmeRI GACNNNNNGTC 1 cut(s) 517
BmgBI CACGTC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 46
Bse3DI GCAATG 2 cut(s) 253, 540
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 173
BseMI GCAATG 2 cut(s) 253, 540
BseMII CTCAG 2 cut(s) 124, 182
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 5 cut(s) 126, 360, 366, 388, 415
BsgI GTGCAG 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 47, 243
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 3 cut(s) 207, 380, 401
BsmFI GGGAC 1 cut(s) 95
Bsp13I TCCGGA 1 cut(s) 46
BspACI CCGC 4 cut(s) 101, 257, 413, 425
BspCNI CTCAG 2 cut(s) 123, 183
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 415
BsrDI GCAATG 2 cut(s) 253, 540
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 73, 88
Bst6I CTCTTC 2 cut(s) 294, 422
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 110, 191
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 2 cut(s) 188, 547
BstMAI GTCTC 3 cut(s) 207, 380, 401
BstMWI GCNNNNNNNGC 2 cut(s) 379, 542
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 374
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 5 cut(s) 126, 360, 366, 388, 415
BtrI CACGTC 1 cut(s) 22
BtsIMutI CAGTG 3 cut(s) 78, 84, 441
Cac8I GCNNGC 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 2 cut(s) 188, 547
Csp6I GTAC 3 cut(s) 265, 315, 321
CviAII CATG 1 cut(s) 227
CviJI RGCY 5 cut(s) 171, 338, 373, 379, 428
CviKI_1 RGCY 5 cut(s) 171, 338, 373, 379, 428
CviQI GTAC 3 cut(s) 265, 315, 321
DdeI CTNAG 2 cut(s) 110, 191
DriI GACNNNNNGTC 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 294, 422
Eam1105I GACNNNNNGTC 1 cut(s) 517
EarI CTCTTC 2 cut(s) 294, 422
Eco57I CTGAAG 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 230
FaiI YATR 6 cut(s) 63, 228, 239, 342, 462, 531
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 7 cut(s) 115, 258, 374, 377, 380, 426, 429
Fsp4HI GCNGC 7 cut(s) 115, 258, 374, 377, 380, 426, 429
FspBI CTAG 1 cut(s) 318
FspI TGCGCA 1 cut(s) 546
GlaI GCGC 2 cut(s) 187, 546
GluI GCNGC 7 cut(s) 115, 258, 374, 377, 380, 426, 429
GsuI CTGGAG 1 cut(s) 404
HapII CCGG 2 cut(s) 47, 243
HhaI GCGC 2 cut(s) 188, 547
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 2 cut(s) 186, 545
HinP1I GCGC 2 cut(s) 186, 545
HinfI GANTC 3 cut(s) 356, 388, 409
HpaII CCGG 2 cut(s) 47, 243
HphI GGTGA 3 cut(s) 86, 244, 283
Hpy188I TCNGA 3 cut(s) 192, 361, 393
Hpy188III TCNNGA 3 cut(s) 37, 47, 296
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 73, 88
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 58, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 542
HpyF3I CTNAG 2 cut(s) 110, 191
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 2 cut(s) 186, 545
Kpn2I TCCGGA 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 422
Lsp1109I GCAGC 5 cut(s) 126, 360, 366, 388, 415
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 437
MbiI CCGCTC 1 cut(s) 415
MboII GAAGA 3 cut(s) 311, 409, 518
MluCI AATT 2 cut(s) 159, 205
MlyI GAGTC 2 cut(s) 382, 403
MnlI CCTC 8 cut(s) 70, 149, 186, 223, 244, 295, 472, 486
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 149, 559
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 2 cut(s) 47, 243
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 379, 542
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 437
NsbI TGCGCA 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 356
PflFI GACNNNGTC 1 cut(s) 449
PkrI GCNGC 7 cut(s) 116, 259, 375, 378, 381, 427, 430
PleI GAGTC 2 cut(s) 382, 403
PpsI GAGTC 2 cut(s) 382, 403
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 382
PsyI GACNNNGTC 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 3 cut(s) 266, 316, 322
RsaNI GTAC 3 cut(s) 265, 315, 321
RseI CAYNNNNRTG 1 cut(s) 507
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 149, 559
SatI GCNGC 7 cut(s) 115, 258, 374, 377, 380, 426, 429
ScaI AGTACT 3 cut(s) 266, 316, 322
SchI GAGTC 2 cut(s) 382, 403
ScrFI CCNGG 1 cut(s) 173
SetI ASST 6 cut(s) 24, 99, 234, 292, 306, 381
SfcI CTRYAG 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 507
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 2 cut(s) 159, 205
SsiI CCGC 4 cut(s) 101, 257, 413, 425
SspI AATATT 1 cut(s) 487
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 73, 88
TaiI ACGT 1 cut(s) 24
TaqI TCGA 3 cut(s) 36, 141, 555
TaqII GACCGA 1 cut(s) 425
TasI AATT 2 cut(s) 159, 205
TatI WGTACW 3 cut(s) 264, 314, 320
TauI GCSGC 2 cut(s) 260, 428
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 149, 559
Tru9I TTAA 2 cut(s) 149, 559
TscAI CASTG 3 cut(s) 78, 91, 448
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 5 cut(s) 114, 373, 376, 379, 428
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 17, 300, 518
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 3 cut(s) 78, 91, 448
Tth111I GACNNNGTC 1 cut(s) 449
XapI RAATTY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 318
ZrmI AGTACT 3 cut(s) 266, 316, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.