Prupe.4G014400_v2.0.a1

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000724
Physical Location & Seq
Forward (+)
668349 .. 669383
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G014400.1

Sequence Viewer

Length: 675 bp
ATGGCTCAGAAATTAATTGGTCCAGCCATGCAATTGCAAGCTGAGTTGCGATGGATGTTGCGTGTGAAAAATATAGTACCACCTCATTACACCATGCACCGCAACAACAAGTATCAAACAGCGGAGGAGCTGTTCAACGAGGAGCACAACGAGCTTCTGAAGTCAGCACAGGAATGGATAAAAGACACAGCTCAGTCGTGCTCAACCGTGGCAGTGCTCGTCGCCGGTGTGCAGCTTACGCCATTCCTGGTGATAAATTTAAAGTACCAAAAGACTCTCCTTTCTTCTGGAATCTTCACCTGCATGGACTTGGCGGCCATCTCCTGCTCATTGTCTTCGGTGGCCTTTTTCCTCTCTATCCTCTCCTCTCCTCTTGAGTACCCATTTTTCTGTCACGGTCCTCCCCGCAAACTCATGACCGGTTTCATCTTGCTCTTCTTGTCCATGGCAACCACCATGCTAGCCTTCGCTGCTAGTATTTTTCTTTTGATTCGTGTCGAGAAGGAATGGACTAAGTCTCTGCTTTACTCTGTTGCCCTTTTTCCTGTCCCTCTATTTGGCCTGCTGCAATTTCCTATGTATCAGTTTGTCAAAGTCATATTTTATAAAATTATCAAGATTTCCCACCGCTTTGCCAAGAGAAAATCAGTATGTGGTAAGACCAAGGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

225

Amino Acids

25.48

Weight (kDa)

9.61

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 308
AciI CCGC 5 cut(s) 100, 122, 314, 406, 628
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 3 cut(s) 78, 266, 380
AfiI CCNNNNNNNGG 1 cut(s) 557
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 5 cut(s) 41, 130, 154, 191, 235
AluI AGCT 5 cut(s) 41, 130, 154, 191, 235
Alw21I GWGCWC 3 cut(s) 147, 203, 219
Alw26I GTCTC 1 cut(s) 522
AoxI GGCC 3 cut(s) 315, 342, 559
ApeKI GCWGC 3 cut(s) 232, 470, 565
ApoI RAATTY 1 cut(s) 256
AseI ATTAAT 1 cut(s) 14
AsiGI ACCGGT 1 cut(s) 419
AspS9I GGNCC 2 cut(s) 20, 398
AsuHPI GGTGA 2 cut(s) 262, 289
AsuNHI GCTAGC 1 cut(s) 460
AvaII GGWCC 2 cut(s) 20, 398
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 3 cut(s) 147, 203, 219
BbvI GCAGC 3 cut(s) 244, 457, 552
BccI CCATC 2 cut(s) 45, 326
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 2 cut(s) 461, 474
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 4 cut(s) 233, 315, 471, 566
BlsI GCNGC 4 cut(s) 234, 316, 472, 567
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 2 cut(s) 20, 398
BmgT120I GGNCC 2 cut(s) 20, 398
BmrFI CCNGG 1 cut(s) 248
BmtI GCTAGC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 395
BsaJI CCNNGG 3 cut(s) 207, 444, 663
BsaWI WCCGGW 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse118I RCCGGY 2 cut(s) 224, 419
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 3 cut(s) 207, 444, 663
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMII CTCAG 3 cut(s) 20, 33, 206
BseRI GAGGAG 4 cut(s) 140, 155, 355, 360
BseXI GCAGC 3 cut(s) 244, 457, 552
BsgI GTGCAG 1 cut(s) 251
BshFI GGCC 3 cut(s) 317, 344, 561
BshTI ACCGGT 1 cut(s) 419
BsiHKAI GWGCWC 3 cut(s) 147, 203, 219
BsiSI CCGG 2 cut(s) 225, 420
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 3 cut(s) 317, 344, 561
Bsp1286I GDGCHC 3 cut(s) 147, 203, 219
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 5 cut(s) 100, 122, 314, 406, 628
BspANI GGCC 3 cut(s) 317, 344, 561
BspCNI CTCAG 3 cut(s) 19, 34, 205
BspHI TCATGA 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 308
BspOI GCTAGC 1 cut(s) 464
BspQI GCTCTTC 1 cut(s) 440
BsrFI RCCGGY 2 cut(s) 224, 419
BssAI RCCGGY 2 cut(s) 224, 419
BssECI CCNNGG 3 cut(s) 207, 444, 663
BssT1I CCWWGG 2 cut(s) 444, 663
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 208, 398
Bst6I CTCTTC 1 cut(s) 440
BstC8I GCNNGC 3 cut(s) 39, 462, 563
BstDEI CTNAG 4 cut(s) 6, 42, 192, 513
BstDSI CCRYGG 2 cut(s) 207, 444
BstF5I GGATG 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 522
BstMWI GCNNNNNNNGC 3 cut(s) 151, 238, 470
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 244, 457, 552
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 3 cut(s) 317, 344, 561
BtgI CCRYGG 2 cut(s) 207, 444
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 3 cut(s) 39, 462, 563
CciI TCATGA 1 cut(s) 414
Cfr10I RCCGGY 2 cut(s) 224, 419
Cfr13I GGNCC 2 cut(s) 20, 398
Csp6I GTAC 3 cut(s) 77, 265, 379
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 6 cut(s) 28, 94, 304, 415, 445, 457
CviQI GTAC 3 cut(s) 77, 265, 379
DdeI CTNAG 4 cut(s) 6, 42, 192, 513
DraI TTTAAA 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco130I CCWWGG 2 cut(s) 444, 663
Eco47I GGWCC 2 cut(s) 20, 398
Eco57I CTGAAG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 444, 663
ErhI CCWWGG 2 cut(s) 444, 663
FaeI CATG 6 cut(s) 31, 97, 307, 418, 448, 460
FaqI GGGAC 1 cut(s) 533
FatI CATG 6 cut(s) 27, 93, 303, 414, 444, 456
FauI CCCGC 1 cut(s) 413
Fnu4HI GCNGC 4 cut(s) 233, 315, 471, 566
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 4 cut(s) 233, 315, 471, 566
FspBI CTAG 2 cut(s) 461, 474
GluI GCNGC 4 cut(s) 233, 315, 471, 566
HaeIII GGCC 3 cut(s) 317, 344, 561
HapII CCGG 2 cut(s) 225, 420
Hin1II CATG 6 cut(s) 31, 97, 307, 418, 448, 460
HinfI GANTC 3 cut(s) 274, 291, 490
HpaII CCGG 2 cut(s) 225, 420
HphI GGTGA 2 cut(s) 262, 289
Hpy188I TCNGA 2 cut(s) 9, 159
Hpy188III TCNNGA 5 cut(s) 288, 374, 415, 499, 616
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 475, 496
HpyCH4III ACNGT 2 cut(s) 208, 398
HpyCH4V TGCA 6 cut(s) 31, 37, 97, 232, 303, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 238, 470
HpyF3I CTNAG 4 cut(s) 6, 42, 192, 513
Hsp92II CATG 6 cut(s) 31, 97, 307, 418, 448, 460
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 2 cut(s) 127, 142
Lsp1109I GCAGC 3 cut(s) 244, 457, 552
MaeI CTAG 2 cut(s) 461, 474
MaeIII GTNAC 1 cut(s) 392
MboII GAAGA 4 cut(s) 276, 286, 327, 427
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 3 cut(s) 147, 203, 219
MluCI AATT 6 cut(s) 11, 15, 32, 256, 569, 609
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 9 cut(s) 93, 118, 133, 362, 371, 376, 381, 411, 561
MseI TTAA 2 cut(s) 14, 260
MslI CAYNNNNRTG 2 cut(s) 172, 302
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 2 cut(s) 225, 420
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 151, 238, 470
NcoI CCATGG 1 cut(s) 444
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 6 cut(s) 31, 97, 307, 418, 448, 460
NmuCI GTSAC 1 cut(s) 392
PagI TCATGA 1 cut(s) 414
PaqCI CACCTGC 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 291, 490
PflFI GACNNNGTC 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 4 cut(s) 234, 316, 472, 567
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 14
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspPI GGNCC 2 cut(s) 20, 398
PsyI GACNNNGTC 1 cut(s) 514
RsaI GTAC 3 cut(s) 78, 266, 380
RsaNI GTAC 3 cut(s) 77, 265, 379
RseI CAYNNNNRTG 2 cut(s) 172, 302
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 2 cut(s) 14, 260
SatI GCNGC 4 cut(s) 233, 315, 471, 566
Sau96I GGNCC 2 cut(s) 20, 398
SchI GAGTC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 3 cut(s) 147, 203, 219
SetI ASST 7 cut(s) 43, 85, 132, 156, 193, 237, 302
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 2 cut(s) 20, 398
SmiMI CAYNNNNRTG 2 cut(s) 172, 302
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 6 cut(s) 11, 15, 32, 256, 569, 609
SsiI CCGC 5 cut(s) 100, 122, 314, 406, 628
SspMI CTAG 2 cut(s) 461, 474
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 444, 663
TaaI ACNGT 2 cut(s) 208, 398
TaqI TCGA 1 cut(s) 498
TasI AATT 6 cut(s) 11, 15, 32, 256, 569, 609
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 2 cut(s) 291, 490
Tru1I TTAA 2 cut(s) 14, 260
Tru9I TTAA 2 cut(s) 14, 260
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 3 cut(s) 232, 470, 565
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 415
TspRI CASTG 1 cut(s) 219
Tth111I GACNNNGTC 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 20, 398
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 1 cut(s) 256
XspI CTAG 2 cut(s) 461, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.