Rroxscaffold_1G00074390

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000724
Physical Location & Seq
Reverse (-)
95402355 .. 95405830
3476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074390.1

Sequence Viewer

Length: 1242 bp
ATGAAGAGGATCTATGGGGACAAGAAGAGGCATGAATCAGCCTTCAAACTAGCCAAGTTACTAATTGCAGCAGACTTTTCATGGGACAGCATAGGAGTACAAGATGAAATCGCTAGCTCAAAGGTCACCGCTCCTACAAATGATGCTCCCTCTTTGGATCGCAAAGCTGATATTGATTGGATAGAAGCCCTTTTAGGTGCAGAAGCCTTAAGTGGCAGCGGTGCTGTTAGTGGCGGCCCAGAAATAGCAGCTTCATCCATGTCAGAACTTCATTCACCTCCAACGCCATTGCTTCTTGCAACAAGCCACGGAATACTAGAAATTGTGGATGAGATACTTAAAGTCTACCCTCTGGCAGTTGAGCATATAAGTGAAAAGGGGCAAAACTTGCTGCATGTTGCTGTTCTGCACCGCCAGTTGGACGTCTTTCAACGAGTCATTAGGATGGAATCACCCAAGTCAAGGTTGGTTCGACGTATCGACAACAATGGATTTACAATCTTGCACCATGTTGGAAACATGGCCTTTTACAAAGGAAGCACACAGCCTGGTCCTGCACTCCAGTTGCAAGAAGAGTTAGAATGGTTTGAGGTAATTCCACCCCATTATGCGATGCAACTTGGCTGGAACGAAAAGGAACAGAAAAACGAGACCCCCAAACAGTACTTTCGTCGCACACATGGCGAGCTTCTCAAGGAGGCCCAAGATTGGATAAAGCGGACCGCCGAGTCGTGCTCGACGGTGGCAGGACTAATGGCCACCGTCGCTTTCGCCGCCGCCTTCACCGTCCCTGGAGGCAACGACGAGAAAAGCGGCACTCCACTCCTTCTTCACAGCCCTTTCTTCTTAGTCTTCATCATCACCGACGCTTTCTCCCTAGCCAGCTCGCTCACGTCACTCGTCATGTTCCTCTCGATTCTGACGTCACCGTACGAGATCGACGACTTCCGCTACTCTCTCCCTCGGAAGCTTATCCTCGGCTTCACCTTCCTCTTCTTCTCGGTGGCGGTGACCATGCTGGCCTTTGCTTCCACACTGATGCTGACAATTTCGACAAAGAAGAGCCTGACAACAACTTTTATATACTGCGTTGCGTTTCTTCCGGTCACTATGTTCGCGCTGTTGCAGTTCCCTTTGTACGTGGCCTTCAAAACGACTCTCCTGTACTCCGTACAGGCCATCCAAAGCGTTCTTCCGTGGCATCTCATCTCTGTTGGTTTTTCAAAACTCAAAAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

413

Amino Acids

45.86

Weight (kDa)

6.64

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 236 - 348 3.8e-25 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 727
AatII GACGTC 2 cut(s) 426, 926
AccBSI CCGCTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 345
AccII CGCG 1 cut(s) 1118
AclWI GGATC 2 cut(s) 17, 165
AcoI YGGCCR 1 cut(s) 756
AcyI GRCGYC 2 cut(s) 423, 923
AfaI GTAC 6 cut(s) 99, 665, 932, 1139, 1166, 1173
AfiI CCNNNNNNNGG 3 cut(s) 418, 462, 708
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 4 cut(s) 46, 431, 1150, 1224
AjiI CACGTC 1 cut(s) 894
AjnI CCWGG 2 cut(s) 547, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 1176, 1208
AluBI AGCT 6 cut(s) 117, 167, 251, 688, 885, 970
AluI AGCT 6 cut(s) 117, 167, 251, 688, 885, 970
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 1 cut(s) 644
AlwI GGATC 2 cut(s) 17, 165
AoxI GGCC 7 cut(s) 235, 522, 699, 756, 1020, 1143, 1176
ApeKI GCWGC 4 cut(s) 68, 216, 248, 391
AspLEI GCGC 1 cut(s) 1120
AspS9I GGNCC 4 cut(s) 236, 551, 700, 720
AsuHPI GGTGA 8 cut(s) 118, 267, 444, 775, 853, 918, 976, 1021
AsuNHI GCTAGC 1 cut(s) 113
AvaII GGWCC 2 cut(s) 551, 720
BalI TGGCCA 1 cut(s) 758
BarI GAAGNNNNNNTAC 2 cut(s) 1130, 1162
BbsI GAAGAC 1 cut(s) 844
Bbv12I GWGCWC 1 cut(s) 737
BbvI GCAGC 4 cut(s) 80, 228, 260, 378
BccI CCATC 2 cut(s) 439, 1187
BciT130I CCWGG 2 cut(s) 549, 792
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 4 cut(s) 50, 114, 317, 878
BfrI CTTAAG 1 cut(s) 208
BisI GCNGC 8 cut(s) 69, 217, 235, 249, 392, 774, 777, 814
BlsI GCNGC 8 cut(s) 70, 218, 236, 250, 393, 775, 778, 815
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 2 cut(s) 549, 792
Bme18I GGWCC 2 cut(s) 551, 720
BmgBI CACGTC 1 cut(s) 894
BmgT120I GGNCC 4 cut(s) 236, 551, 700, 720
BmrFI CCNGG 2 cut(s) 549, 792
BmsI GCATC 4 cut(s) 133, 603, 1029, 1210
BmtI GCTAGC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 844
BplI GAGNNNNNCTC 2 cut(s) 719, 751
BpmI CTGGAG 2 cut(s) 545, 813
BpuEI CTTGAG 1 cut(s) 677
BsaAI YACGTR 1 cut(s) 1141
BsaHI GRCGYC 2 cut(s) 423, 923
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 5 cut(s) 307, 790, 962, 976, 1196
BsaWI WCCGGW 1 cut(s) 1102
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 462, 708
Bse1I ACTGG 2 cut(s) 415, 562
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 549, 792
BseDI CCNNGG 5 cut(s) 307, 790, 962, 976, 1196
BseGI GGATG 4 cut(s) 254, 334, 450, 1179
BseLI CCNNNNNNNGG 3 cut(s) 418, 462, 708
BseMI GCAATG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 415, 562
BseXI GCAGC 4 cut(s) 80, 228, 260, 378
BsgI GTGCAG 3 cut(s) 219, 392, 540
Bsh1236I CGCG 1 cut(s) 1118
BshFI GGCC 7 cut(s) 237, 524, 701, 758, 1022, 1145, 1178
BsiHKAI GWGCWC 1 cut(s) 737
BsiSI CCGG 1 cut(s) 1103
BsiWI CGTACG 1 cut(s) 930
BslFI GGGAC 3 cut(s) 32, 98, 773
BslI CCNNNNNNNGG 3 cut(s) 418, 462, 708
BsmAI GTCTC 1 cut(s) 644
BsmFI GGGAC 3 cut(s) 32, 98, 773
BsnI GGCC 7 cut(s) 237, 524, 701, 758, 1022, 1145, 1178
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 737
Bsp143I GATC 3 cut(s) 9, 157, 936
BspANI GGCC 7 cut(s) 237, 524, 701, 758, 1022, 1145, 1178
BspFNI CGCG 1 cut(s) 1118
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 17, 165
BspQI GCTCTTC 1 cut(s) 1055
BspTI CTTAAG 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 287
BsrI ACTGG 2 cut(s) 415, 562
BssECI CCNNGG 5 cut(s) 307, 790, 962, 976, 1196
BssMI GATC 3 cut(s) 9, 157, 936
BssNI GRCGYC 2 cut(s) 423, 923
Bst2UI CCWGG 2 cut(s) 549, 792
Bst4CI ACNGT 5 cut(s) 663, 742, 763, 787, 930
Bst6I CTCTTC 4 cut(s) 20, 567, 998, 1055
BstACI GRCGYC 2 cut(s) 423, 923
BstAFI CTTAAG 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 388
BstBAI YACGTR 1 cut(s) 1141
BstC8I GCNNGC 5 cut(s) 115, 686, 883, 887, 1020
BstDEI CTNAG 1 cut(s) 847
BstDSI CCRYGG 2 cut(s) 307, 1196
BstEII GGTNACC 2 cut(s) 124, 1009
BstF5I GGATG 4 cut(s) 254, 334, 450, 1179
BstFNI CGCG 1 cut(s) 1118
BstHHI GCGC 1 cut(s) 1120
BstKTI GATC 3 cut(s) 12, 160, 939
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 3 cut(s) 9, 157, 936
BstMWI GCNNNNNNNGC 4 cut(s) 388, 681, 764, 773
BstNI CCWGG 2 cut(s) 549, 792
BstNSI RCATGY 1 cut(s) 398
BstPI GGTNACC 2 cut(s) 124, 1009
BstSCI CCNGG 2 cut(s) 547, 790
BstUI CGCG 1 cut(s) 1118
BstV1I GCAGC 4 cut(s) 80, 228, 260, 378
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 7 cut(s) 237, 524, 701, 758, 1022, 1145, 1178
BtgI CCRYGG 2 cut(s) 307, 1196
BtgZI GCGATG 1 cut(s) 626
BtrI CACGTC 1 cut(s) 894
BtsCI GGATG 4 cut(s) 254, 334, 450, 1179
BtsIMutI CAGTG 1 cut(s) 1034
Cac8I GCNNGC 5 cut(s) 115, 686, 883, 887, 1020
CfoI GCGC 1 cut(s) 1120
Cfr13I GGNCC 4 cut(s) 236, 551, 700, 720
CpoI CGGWCCG 1 cut(s) 720
CseI GACGC 1 cut(s) 875
Csp6I GTAC 6 cut(s) 98, 664, 931, 1138, 1165, 1172
CspI CGGWCCG 1 cut(s) 720
CviAII CATG 9 cut(s) 32, 81, 259, 395, 509, 520, 680, 904, 1015
CviQI GTAC 6 cut(s) 98, 664, 931, 1138, 1165, 1172
DdeI CTNAG 1 cut(s) 847
DpnI GATC 3 cut(s) 11, 159, 938
DpnII GATC 3 cut(s) 9, 157, 936
DrdI GACNNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 756
Eam1104I CTCTTC 4 cut(s) 20, 567, 998, 1055
EarI CTCTTC 4 cut(s) 20, 567, 998, 1055
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 551, 720
Eco91I GGTNACC 2 cut(s) 124, 1009
EcoO65I GGTNACC 2 cut(s) 124, 1009
EcoRII CCWGG 2 cut(s) 547, 790
FaeI CATG 9 cut(s) 35, 84, 262, 398, 512, 523, 683, 907, 1018
FaqI GGGAC 3 cut(s) 32, 98, 773
FatI CATG 9 cut(s) 31, 80, 258, 394, 508, 519, 679, 903, 1014
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 8 cut(s) 69, 217, 235, 249, 392, 774, 777, 814
FokI GGATG 4 cut(s) 241, 341, 457, 1166
Fsp4HI GCNGC 8 cut(s) 69, 217, 235, 249, 392, 774, 777, 814
FspBI CTAG 4 cut(s) 50, 114, 317, 878
GlaI GCGC 1 cut(s) 1119
GluI GCNGC 8 cut(s) 69, 217, 235, 249, 392, 774, 777, 814
GsuI CTGGAG 2 cut(s) 545, 813
HaeIII GGCC 7 cut(s) 237, 524, 701, 758, 1022, 1145, 1178
HapII CCGG 1 cut(s) 1103
HgaI GACGC 1 cut(s) 875
HhaI GCGC 1 cut(s) 1120
Hin1I GRCGYC 2 cut(s) 423, 923
Hin1II CATG 9 cut(s) 35, 84, 262, 398, 512, 523, 683, 907, 1018
Hin6I GCGC 1 cut(s) 1118
HinP1I GCGC 1 cut(s) 1118
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 6 cut(s) 35, 435, 449, 728, 916, 1156
HpaII CCGG 1 cut(s) 1103
HphI GGTGA 8 cut(s) 118, 267, 444, 775, 853, 918, 976, 1021
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 265, 921, 966
Hpy188III TCNNGA 1 cut(s) 913
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 7 cut(s) 477, 675, 742, 767, 806, 869, 944
HpyAV CCTTC 5 cut(s) 52, 790, 836, 997, 1156
HpyCH4III ACNGT 5 cut(s) 663, 742, 763, 787, 930
HpyCH4IV ACGT 5 cut(s) 423, 475, 893, 923, 1140
HpyF10VI GCNNNNNNNGC 4 cut(s) 388, 681, 764, 773
HpyF3I CTNAG 1 cut(s) 847
HpySE526I ACGT 5 cut(s) 423, 475, 893, 923, 1140
Hsp92I GRCGYC 2 cut(s) 423, 923
Hsp92II CATG 9 cut(s) 35, 84, 262, 398, 512, 523, 683, 907, 1018
HspAI GCGC 1 cut(s) 1118
Kzo9I GATC 3 cut(s) 9, 157, 936
LguI GCTCTTC 1 cut(s) 1055
LmnI GCTCC 2 cut(s) 136, 151
Lsp1109I GCAGC 4 cut(s) 80, 228, 260, 378
LweI GCATC 4 cut(s) 133, 603, 1029, 1210
MaeI CTAG 4 cut(s) 50, 114, 317, 878
MaeII ACGT 5 cut(s) 423, 475, 893, 923, 1140
MaeIII GTNAC 6 cut(s) 57, 124, 894, 924, 1009, 1105
MalI GATC 3 cut(s) 11, 159, 938
MbiI CCGCTC 1 cut(s) 131
MboI GATC 3 cut(s) 9, 157, 936
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 737
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 5 cut(s) 63, 321, 594, 1047, 1237
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 3 cut(s) 444, 737, 1150
MmeI TCCRAC 3 cut(s) 305, 399, 493
Mox20I TGGCCA 1 cut(s) 758
MscI TGGCCA 1 cut(s) 758
MseI TTAA 3 cut(s) 209, 339, 1240
MslI CAYNNNNRTG 3 cut(s) 369, 443, 1037
Msp20I TGGCCA 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 219
MspCI CTTAAG 1 cut(s) 208
MspI CCGG 1 cut(s) 1103
MspR9I CCNGG 2 cut(s) 549, 792
MvaI CCWGG 2 cut(s) 549, 792
MvnI CGCG 1 cut(s) 1118
MwoI GCNNNNNNNGC 4 cut(s) 388, 681, 764, 773
NdeII GATC 3 cut(s) 9, 157, 936
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 9 cut(s) 35, 84, 262, 398, 512, 523, 683, 907, 1018
NmeAIII GCCGAG 2 cut(s) 751, 957
NmuCI GTSAC 5 cut(s) 124, 894, 924, 1009, 1105
NspI RCATGY 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 1055
PcsI WCGNNNNNNNCGW 2 cut(s) 920, 939
PfeI GAWTC 3 cut(s) 35, 449, 916
Pfl23II CGTACG 1 cut(s) 930
PkrI GCNGC 8 cut(s) 70, 218, 236, 250, 393, 775, 778, 815
PleI GAGTC 3 cut(s) 443, 736, 1150
PpsI GAGTC 3 cut(s) 443, 736, 1150
Ppu21I YACGTR 1 cut(s) 1141
Psp6I CCWGG 2 cut(s) 547, 790
PspEI GGTNACC 2 cut(s) 124, 1009
PspGI CCWGG 2 cut(s) 547, 790
PspLI CGTACG 1 cut(s) 930
PspPI GGNCC 4 cut(s) 236, 551, 700, 720
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 6 cut(s) 99, 665, 932, 1139, 1166, 1173
RsaNI GTAC 6 cut(s) 98, 664, 931, 1138, 1165, 1172
RseI CAYNNNNRTG 3 cut(s) 369, 443, 1037
Rsr2I CGGWCCG 1 cut(s) 720
RsrII CGGWCCG 1 cut(s) 720
SapI GCTCTTC 1 cut(s) 1055
SaqAI TTAA 3 cut(s) 209, 339, 1240
SatI GCNGC 8 cut(s) 69, 217, 235, 249, 392, 774, 777, 814
Sau3AI GATC 3 cut(s) 9, 157, 936
Sau96I GGNCC 4 cut(s) 236, 551, 700, 720
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 3 cut(s) 444, 737, 1150
ScrFI CCNGG 2 cut(s) 549, 792
SduI GDGCHC 1 cut(s) 737
SfaNI GCATC 4 cut(s) 133, 603, 1029, 1210
SinI GGWCC 2 cut(s) 551, 720
SmiMI CAYNNNNRTG 3 cut(s) 369, 443, 1037
SmlI CTYRAG 2 cut(s) 208, 692
SmoI CTYRAG 2 cut(s) 208, 692
Sse9I AATT 5 cut(s) 63, 321, 594, 1047, 1237
SspMI CTAG 4 cut(s) 50, 114, 317, 878
StyD4I CCNGG 2 cut(s) 547, 790
TaaI ACNGT 5 cut(s) 663, 742, 763, 787, 930
TaiI ACGT 5 cut(s) 426, 478, 896, 926, 1143
TaqI TCGA 6 cut(s) 472, 480, 737, 914, 939, 1052
TasI AATT 5 cut(s) 63, 321, 594, 1047, 1237
TatI WGTACW 3 cut(s) 97, 663, 1164
TauI GCSGC 4 cut(s) 237, 776, 779, 816
TfiI GAWTC 3 cut(s) 35, 449, 916
Tru1I TTAA 3 cut(s) 209, 339, 1240
Tru9I TTAA 3 cut(s) 209, 339, 1240
TscAI CASTG 1 cut(s) 1041
TseFI GTSAC 5 cut(s) 124, 894, 924, 1009, 1105
TseI GCWGC 4 cut(s) 68, 216, 248, 391
Tsp45I GTSAC 5 cut(s) 124, 894, 924, 1009, 1105
TspDTI ATGAA 7 cut(s) 17, 48, 69, 120, 243, 260, 844
TspGWI ACGGA 3 cut(s) 324, 1159, 1185
TspRI CASTG 1 cut(s) 1041
Vha464I CTTAAG 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 551, 720
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 4 cut(s) 50, 114, 317, 878
ZraI GACGTC 2 cut(s) 424, 924
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.