MD09G1059800.v1.1

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000724
Physical Location & Seq
Reverse (-)
4052349 .. 4053178
830 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1059800.v1.1.491

Sequence Viewer

Length: 795 bp
ATGGAGTACTGGAAAACGCTGATGGTTCGGCCGGATCAAAACGTGGTCCAGCCGGAGCAGAAAGAGAGAGACGATAGGTTAAAGCAAATGAAAAGTCCCTATGAAAGTGCCATGGAGGAGAGATGGGAAGACGTGACGAAATACTTCGAGGGGAATGCAGAAAAACTGCTCTATAATATGACAGCGGAGGGGGACACTGCACTTCACCTTGCGGCTTCTCGCAGCAGCAAATCACAAGGCACAGAAGTCCTCCAAATGTTTATCAATATACTCAGGAATTCAACCAGCTATGACGTGAGATGCGCTCTGAGGCTTCCAAATAGCTACGGAAACAATACTCTCCATGAGGTGAGTGTGTCTGGCAATGAGAAAGCGGCAAAGTACTTGTTGAGCAACTTCAACGATCCTGTTCTGGGAGAGGTAGTCACCATCAGTAGTAGTACAGATAAAGACTGCGATATGAAGCTGCGTGAGGTTCGGGATTTAGAGAATTCTAAGGTGCAGCTGCTGGAGACTCGGAACTATTTAGGAGAAACTCCGCTCTTCAGGGCAGCTGCTCTCGGTCACGCTGACTTGGTCAAGTTTTATGCCAGCAAACTGCCGGGGGACAATCTTTGGAAGCACTTCCACAGAGATGACAAAAAGTCCATTCTTCATATGGCAGTCATTGCACAACATTTCGGTCACTCTCTCTCTCTCTCCCTGAGAAAATGCACAGAATTATTTGTAGTGCAGATTAATAGCTTTTGCTTTTTTGACTTACAATGCAGAGATTGCTCTTTGGTTACTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

265

Amino Acids

30.21

Weight (kDa)

6.26

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 541
AciI CCGC 4 cut(s) 185, 212, 374, 539
AclWI GGATC 2 cut(s) 42, 398
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 2 cut(s) 277, 490
AcuI CTGAAG 1 cut(s) 529
AfaI GTAC 3 cut(s) 8, 383, 442
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 2 cut(s) 282, 400
AhdI GACNNNNNGTC 1 cut(s) 643
AjiI CACGTC 2 cut(s) 133, 295
AluBI AGCT 6 cut(s) 288, 324, 466, 505, 554, 744
AluI AGCT 6 cut(s) 288, 324, 466, 505, 554, 744
Alw26I GTCTC 2 cut(s) 63, 506
AlwI GGATC 2 cut(s) 42, 398
AlwNI CAGNNNCTG 1 cut(s) 508
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 7 cut(s) 222, 225, 466, 502, 505, 551, 554
ApoI RAATTY 2 cut(s) 277, 490
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
AseI ATTAAT 1 cut(s) 738
Asp700I GAANNNNTTC 2 cut(s) 143, 623
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 3 cut(s) 197, 361, 418
AvaII GGWCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 7 cut(s) 234, 237, 453, 492, 514, 541, 563
BccI CCATC 3 cut(s) 16, 117, 437
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 2 cut(s) 63, 506
BisI GCNGC 9 cut(s) 213, 223, 226, 375, 467, 503, 506, 552, 555
BlsI GCNGC 9 cut(s) 214, 224, 227, 376, 468, 504, 507, 553, 556
BmcAI AGTACT 2 cut(s) 8, 383
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 1 cut(s) 46
BmeRI GACNNNNNGTC 1 cut(s) 643
BmgBI CACGTC 2 cut(s) 133, 295
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpmI CTGGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 111, 602
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 2 cut(s) 14, 793
Bse3DI GCAATG 2 cut(s) 370, 666
BseDI CCNNGG 2 cut(s) 111, 602
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 2 cut(s) 370, 666
BseMII CTCAG 3 cut(s) 286, 299, 695
BseNI ACTGG 2 cut(s) 14, 793
BseRI GAGGAG 1 cut(s) 131
BseX3I CGGCCG 1 cut(s) 29
BseXI GCAGC 7 cut(s) 234, 237, 453, 492, 514, 541, 563
BsgI GTGCAG 3 cut(s) 183, 521, 752
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 3 cut(s) 32, 53, 602
BslFI GGGAC 3 cut(s) 81, 206, 620
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 63, 506
BsmBI CGTCTC 1 cut(s) 63
BsmFI GGGAC 3 cut(s) 81, 206, 620
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 34, 403
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 4 cut(s) 185, 212, 374, 539
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 3 cut(s) 285, 300, 696
BspPI GGATC 2 cut(s) 42, 398
BspQI GCTCTTC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 370, 666
BsrI ACTGG 2 cut(s) 14, 793
BssECI CCNNGG 2 cut(s) 111, 602
BssMI GATC 2 cut(s) 34, 403
BssT1I CCWWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 548
BstAPI GCANNNNNTGC 2 cut(s) 668, 774
BstC8I GCNNGC 1 cut(s) 592
BstDEI CTNAG 4 cut(s) 272, 308, 495, 704
BstDSI CCRYGG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 37, 406
BstMAI GTCTC 2 cut(s) 63, 506
BstMBI GATC 2 cut(s) 34, 403
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 668, 774
BstSCI CCNGG 1 cut(s) 601
BstV1I GCAGC 7 cut(s) 234, 237, 453, 492, 514, 541, 563
BstV2I GAAGAC 1 cut(s) 135
BstZI CGGCCG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 2 cut(s) 133, 295
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 592
CaiI CAGNNNCTG 1 cut(s) 508
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 7, 382, 441
CviAII CATG 2 cut(s) 112, 344
CviQI GTAC 3 cut(s) 7, 382, 441
DdeI CTNAG 4 cut(s) 272, 308, 495, 704
DpnI GATC 2 cut(s) 36, 405
DpnII GATC 2 cut(s) 34, 403
DriI GACNNNNNGTC 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 29
EagI CGGCCG 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 548
Eam1105I GACNNNNNGTC 1 cut(s) 643
EarI CTCTTC 1 cut(s) 548
EclXI CGGCCG 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 46
Eco52I CGGCCG 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 529
EcoRI GAATTC 2 cut(s) 277, 490
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 2 cut(s) 115, 347
FaqI GGGAC 3 cut(s) 81, 206, 620
FatI CATG 2 cut(s) 111, 343
FauNDI CATATG 1 cut(s) 657
Fnu4HI GCNGC 9 cut(s) 213, 223, 226, 375, 467, 503, 506, 552, 555
Fsp4HI GCNGC 9 cut(s) 213, 223, 226, 375, 467, 503, 506, 552, 555
GlaI GCGC 1 cut(s) 304
GluI GCNGC 9 cut(s) 213, 223, 226, 375, 467, 503, 506, 552, 555
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 1 cut(s) 31
HapII CCGG 3 cut(s) 32, 53, 602
HhaI GCGC 1 cut(s) 305
Hin1II CATG 2 cut(s) 115, 347
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 1 cut(s) 514
HpaII CCGG 3 cut(s) 32, 53, 602
HphI GGTGA 3 cut(s) 197, 361, 418
Hpy188I TCNGA 2 cut(s) 309, 519
Hpy188III TCNNGA 2 cut(s) 274, 479
HpyCH4IV ACGT 3 cut(s) 42, 132, 294
HpyCH4V TGCA 7 cut(s) 158, 200, 502, 671, 714, 733, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 774
HpyF3I CTNAG 4 cut(s) 272, 308, 495, 704
HpySE526I ACGT 3 cut(s) 42, 132, 294
Hsp92II CATG 2 cut(s) 115, 347
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 34, 403
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 7 cut(s) 234, 237, 453, 492, 514, 541, 563
LweI GCATC 1 cut(s) 290
MaeII ACGT 3 cut(s) 42, 132, 294
MaeIII GTNAC 5 cut(s) 133, 424, 563, 683, 784
MalI GATC 2 cut(s) 36, 405
MbiI CCGCTC 1 cut(s) 541
MboI GATC 2 cut(s) 34, 403
MboII GAAGA 3 cut(s) 140, 535, 644
MluCI AATT 3 cut(s) 277, 490, 719
MlyI GAGTC 1 cut(s) 508
MnlI CCTC 8 cut(s) 109, 142, 181, 260, 303, 340, 412, 466
MroXI GAANNNNTTC 2 cut(s) 143, 623
MseI TTAA 2 cut(s) 80, 738
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 3 cut(s) 185, 505, 554
MspI CCGG 3 cut(s) 32, 53, 602
MspR9I CCNGG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 668, 774
NciI CCSGG 1 cut(s) 603
NcoI CCATGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 657
NdeII GATC 2 cut(s) 34, 403
NlaIII CATG 2 cut(s) 115, 347
NmuCI GTSAC 4 cut(s) 133, 424, 563, 683
PciSI GCTCTTC 1 cut(s) 548
PctI GAATGC 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 143, 623
PflFI GACNNNGTC 1 cut(s) 575
PkrI GCNGC 9 cut(s) 214, 224, 227, 376, 468, 504, 507, 553, 556
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PshBI ATTAAT 1 cut(s) 738
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 508
PsyI GACNNNGTC 1 cut(s) 575
PvuII CAGCTG 2 cut(s) 505, 554
RsaI GTAC 3 cut(s) 8, 383, 442
RsaNI GTAC 3 cut(s) 7, 382, 441
RseI CAYNNNNRTG 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 2 cut(s) 80, 738
SatI GCNGC 9 cut(s) 213, 223, 226, 375, 467, 503, 506, 552, 555
Sau3AI GATC 2 cut(s) 34, 403
Sau96I GGNCC 1 cut(s) 46
ScaI AGTACT 2 cut(s) 8, 383
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 1 cut(s) 603
SfaNI GCATC 1 cut(s) 290
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 633
Sse9I AATT 3 cut(s) 277, 490, 719
SsiI CCGC 4 cut(s) 185, 212, 374, 539
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 3 cut(s) 45, 135, 297
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 2 cut(s) 551, 671
TasI AATT 3 cut(s) 277, 490, 719
TatI WGTACW 3 cut(s) 6, 381, 440
TauI GCSGC 2 cut(s) 215, 377
Tru1I TTAA 2 cut(s) 80, 738
Tru9I TTAA 2 cut(s) 80, 738
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 4 cut(s) 133, 424, 563, 683
TseI GCWGC 7 cut(s) 222, 225, 466, 502, 505, 551, 554
Tsp45I GTSAC 4 cut(s) 133, 424, 563, 683
TspDTI ATGAA 4 cut(s) 104, 117, 476, 644
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 202
Tth111I GACNNNGTC 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 46
VspI ATTAAT 1 cut(s) 738
XapI RAATTY 2 cut(s) 277, 490
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XmnI GAANNNNTTC 2 cut(s) 143, 623
ZrmI AGTACT 2 cut(s) 8, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.