pycom05g32040

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000724
Physical Location & Seq
Reverse (-)
31571803 .. 31579966
8164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32040.1

Sequence Viewer

Length: 1179 bp
ATGACGCTGAACGGGAACAATGTACTTCACCTTGCGGCTTCTTGCAGCAGCAACTGTCAAAGAGACCTCAAATTTCTTATTGATATATGCAGCGGTTCAACCAGCAACGTGAGTTGTTCTTTGAGGATTCCGAATAATGACGGAAACAATGTTCTTCACCAGGTGGCTGTGTCCGGCAGTGTGGAAGCGGCTGAGTTCTTGGTGAACAAATACAACGACCCTGTCCCAGACATTTGTCATACTGATGAAGAGAATGATACGCAGCCGCTGCTGTGGACTCGGAACAAATTAGGAGAAACTCCACTGTACAGAACGGCTGCTTTCGGTCACACTAAATTGGTCAAGTTTTACTGTGACAAACTGAAGGCAGAAAGTCCGGACAATCTAATTAAGAAGCAGTTCAAGAGATCTGACAAAATCTCCATTCTTCATATTGCTGTCATCGCCCAACATTTTGAGACTGCTTATTGGTTGCTAAAGAGGTACAGGAATCTAGGAAAAAAGAGAGACGCAGAAGGATTGACAAGCCTTCAGTTGTTAGCCCAAATGCCAACTGCCCTTGAGCCACGGTTTCAAGAAAGCCAATGGAAGATGCTCATTTATCATTGCCTTCCTGATGGAGGTGATGTGGTCACACCAAATCAGAAGGATGATGTGGAGAGCAGCACGGATAGCCACCATCCCCGTCAATCCATCTTTCGGAACAAGTTTGCAGTTGTTATGAAGGCTTACCATTCATTATGGGACACCCTTGCTAAAGGAATAGGAGGCCCACATGAAGATGTAATCGACACGATATGGAAGGAGAAGAAAAACAAAAAATCACTGAAGAAACTCATCCCATTGCTCGTCATGTTGGACGACTATTCTTTGTTGATTACTAATAAGCAACCAAATATCAGGACCATTTCTCTAGGGTCAGGGGAAAAACCTGATAAAGAAAAGGAAATAACCGTATCGGATAGATGTAAAAAAGAAGAGGAAGCAACCAAATCAAAAAAGGAGGCGAGGAGTGAAGCTTACAAATCTACTCCATTGCTTATAGCAACTATCACAGGATTTTCAACCATTGTGAAGGAGATACTTGAACAGCATCCTCAGACAGCCGAGCTTGTTAACGAAAATGAACGCAACATTTTGCATCTGGCCATTAAGAACCGTGCAGAAAGAGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

393

Amino Acids

44.34

Weight (kDa)

8.45

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 4 cut(s) 35, 93, 188, 266
AclWI GGATC 1 cut(s) 1166
AcoI YGGCCR 1 cut(s) 1146
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 3 cut(s) 383, 515, 848
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 3 cut(s) 24, 308, 485
AfiI CCNNNNNNNGG 2 cut(s) 620, 699
AgsI TTSAA 5 cut(s) 99, 403, 575, 1065, 1088
AjnI CCWGG 1 cut(s) 159
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 2 cut(s) 1019, 1111
AluI AGCT 2 cut(s) 1019, 1111
Alw26I GTCTC 3 cut(s) 57, 452, 501
AlwI GGATC 1 cut(s) 1166
AlwNI CAGNNNCTG 2 cut(s) 54, 268
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 2 cut(s) 769, 1146
ApeKI GCWGC 7 cut(s) 45, 48, 90, 262, 268, 317, 663
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 770, 903
AsuHPI GGTGA 4 cut(s) 20, 149, 214, 635
AvaII GGWCC 1 cut(s) 903
BalI TGGCCA 1 cut(s) 1148
BbvI GCAGC 7 cut(s) 57, 60, 102, 255, 274, 304, 675
BccI CCATC 3 cut(s) 611, 687, 701
BceAI ACGGC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 3 cut(s) 57, 452, 501
BfaI CTAG 2 cut(s) 494, 914
BglII AGATCT 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 770, 903
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 582, 1102, 1150
BoxI GACNNNNGTC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 566
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 612, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 620, 699
Bse3DI GCAATG 3 cut(s) 604, 842, 1034
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 4 cut(s) 655, 679, 837, 1093
BseLI CCNNNNNNNGG 2 cut(s) 620, 699
BseMI GCAATG 3 cut(s) 604, 842, 1034
BseMII CTCAG 2 cut(s) 183, 1112
BseRI GAGGAG 1 cut(s) 1024
BseXI GCAGC 7 cut(s) 57, 60, 102, 255, 274, 304, 675
BshFI GGCC 2 cut(s) 771, 1148
BsiSI CCGG 2 cut(s) 174, 377
BslFI GGGAC 2 cut(s) 209, 758
BslI CCNNNNNNNGG 2 cut(s) 620, 699
BsmAI GTCTC 3 cut(s) 57, 452, 501
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 2 cut(s) 209, 758
BsnI GGCC 2 cut(s) 771, 1148
Bso31I GGTCTC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 2 cut(s) 407, 1171
BspACI CCGC 4 cut(s) 35, 93, 188, 266
BspANI GGCC 2 cut(s) 771, 1148
BspCNI CTCAG 2 cut(s) 184, 1111
BspEI TCCGGA 1 cut(s) 376
BspPI GGATC 1 cut(s) 1166
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 3 cut(s) 604, 842, 1034
BsrGI TGTACA 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 2 cut(s) 407, 1171
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 6 cut(s) 56, 306, 353, 570, 955, 1160
Bst6I CTCTTC 2 cut(s) 243, 972
BstAPI GCANNNNNTGC 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 192, 1098
BstDSI CCRYGG 1 cut(s) 566
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 4 cut(s) 655, 679, 837, 1093
BstKTI GATC 2 cut(s) 410, 1174
BstMAI GTCTC 3 cut(s) 57, 452, 501
BstMBI GATC 2 cut(s) 407, 1171
BstMWI GCNNNNNNNGC 3 cut(s) 268, 443, 672
BstNI CCWGG 1 cut(s) 161
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 7 cut(s) 57, 60, 102, 255, 274, 304, 675
BstX2I RGATCY 2 cut(s) 407, 1171
BstYI RGATCY 2 cut(s) 407, 1171
BsuRI GGCC 2 cut(s) 771, 1148
BtgI CCRYGG 1 cut(s) 566
BtgZI GCGATG 1 cut(s) 427
BtsCI GGATG 4 cut(s) 655, 679, 837, 1093
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 3 cut(s) 184, 302, 824
CaiI CAGNNNCTG 2 cut(s) 54, 268
Cfr13I GGNCC 2 cut(s) 770, 903
CseI GACGC 2 cut(s) 13, 518
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 3 cut(s) 23, 307, 484
CviAII CATG 2 cut(s) 776, 853
CviQI GTAC 3 cut(s) 23, 307, 484
DdeI CTNAG 2 cut(s) 192, 1098
DpnI GATC 2 cut(s) 409, 1173
DpnII GATC 2 cut(s) 407, 1171
DraIII CACNNNGTG 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 1146
Eam1104I CTCTTC 2 cut(s) 243, 972
EarI CTCTTC 2 cut(s) 243, 972
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 903
Eco57I CTGAAG 3 cut(s) 383, 515, 848
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 2 cut(s) 779, 856
FalI AAGNNNNNCTT 1 cut(s) 1159
FaqI GGGAC 2 cut(s) 209, 758
FatI CATG 2 cut(s) 775, 852
FokI GGATG 4 cut(s) 662, 666, 824, 1080
FspBI CTAG 2 cut(s) 494, 914
HaeIII GGCC 2 cut(s) 771, 1148
HapII CCGG 2 cut(s) 174, 377
HgaI GACGC 2 cut(s) 13, 518
Hin1II CATG 2 cut(s) 779, 856
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HindIII AAGCTT 1 cut(s) 1017
HinfI GANTC 3 cut(s) 127, 277, 490
HpaI GTTAAC 1 cut(s) 1117
HpaII CCGG 2 cut(s) 174, 377
HphI GGTGA 4 cut(s) 20, 149, 214, 635
Hpy166II GTNNAC 3 cut(s) 205, 276, 1117
Hpy188I TCNGA 7 cut(s) 132, 282, 412, 645, 702, 961, 1101
Hpy188III TCNNGA 5 cut(s) 377, 403, 575, 614, 901
Hpy8I GTNNAC 3 cut(s) 205, 276, 1117
HpyAV CCTTC 8 cut(s) 358, 509, 539, 620, 640, 718, 796, 1069
HpyCH4III ACNGT 6 cut(s) 56, 306, 353, 570, 955, 1160
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 45, 90, 713, 1141, 1163
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 443, 672
HpyF3I CTNAG 2 cut(s) 192, 1098
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 779, 856
Kpn2I TCCGGA 1 cut(s) 376
KspAI GTTAAC 1 cut(s) 1117
Kzo9I GATC 2 cut(s) 407, 1171
Lsp1109I GCAGC 7 cut(s) 57, 60, 102, 255, 274, 304, 675
LweI GCATC 3 cut(s) 582, 1102, 1150
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 2 cut(s) 494, 914
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 3 cut(s) 326, 353, 631
MalI GATC 2 cut(s) 409, 1173
MboI GATC 2 cut(s) 407, 1171
MboII GAAGA 8 cut(s) 146, 260, 419, 601, 791, 820, 841, 989
MflI RGATCY 2 cut(s) 407, 1171
MlsI TGGCCA 1 cut(s) 1148
MluCI AATT 4 cut(s) 71, 287, 335, 387
MluNI TGGCCA 1 cut(s) 1148
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 837
MnlI CCTC 9 cut(s) 77, 117, 474, 614, 761, 973, 997, 1002, 1107
Mox20I TGGCCA 1 cut(s) 1148
MroI TCCGGA 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 1148
MseI TTAA 3 cut(s) 390, 1116, 1152
MslI CAYNNNNRTG 2 cut(s) 243, 780
Msp20I TGGCCA 1 cut(s) 1148
MspA1I CMGCKG 2 cut(s) 93, 268
MspI CCGG 2 cut(s) 174, 377
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 268, 443, 672
NdeII GATC 2 cut(s) 407, 1171
NlaIII CATG 2 cut(s) 779, 856
NmeAIII GCCGAG 1 cut(s) 1132
NmuCI GTSAC 3 cut(s) 326, 353, 631
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 127, 490
PflFI GACNNNGTC 1 cut(s) 221
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspPI GGNCC 2 cut(s) 770, 903
PstNI CAGNNNCTG 2 cut(s) 54, 268
PsuI RGATCY 2 cut(s) 407, 1171
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 3 cut(s) 24, 308, 485
RsaNI GTAC 3 cut(s) 23, 307, 484
RseI CAYNNNNRTG 2 cut(s) 243, 780
SaqAI TTAA 3 cut(s) 390, 1116, 1152
Sau3AI GATC 2 cut(s) 407, 1171
Sau96I GGNCC 2 cut(s) 770, 903
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 161
SetI ASST 9 cut(s) 33, 69, 111, 165, 485, 625, 934, 1021, 1113
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 3 cut(s) 582, 1102, 1150
SinI GGWCC 1 cut(s) 903
SmiMI CAYNNNNRTG 2 cut(s) 243, 780
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 4 cut(s) 71, 287, 335, 387
SsiI CCGC 4 cut(s) 35, 93, 188, 266
SspMI CTAG 2 cut(s) 494, 914
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 6 cut(s) 56, 306, 353, 570, 955, 1160
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 789
TaqII GACCGA 1 cut(s) 314
TasI AATT 4 cut(s) 71, 287, 335, 387
TatI WGTACW 2 cut(s) 22, 306
TauI GCSGC 3 cut(s) 38, 191, 268
TfiI GAWTC 2 cut(s) 127, 490
Tru1I TTAA 3 cut(s) 390, 1116, 1152
Tru9I TTAA 3 cut(s) 390, 1116, 1152
TscAI CASTG 3 cut(s) 184, 309, 831
TseFI GTSAC 3 cut(s) 326, 353, 631
TseI GCWGC 7 cut(s) 45, 48, 90, 262, 268, 317, 663
Tsp45I GTSAC 3 cut(s) 326, 353, 631
TspDTI ATGAA 6 cut(s) 261, 419, 726, 737, 792, 1140
TspGWI ACGGA 2 cut(s) 156, 683
TspRI CASTG 3 cut(s) 184, 309, 831
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 903
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 2 cut(s) 494, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.