pycom10g27760

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000724
Physical Location & Seq
Reverse (-)
28659043 .. 28660425
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g27760.1

Sequence Viewer

Length: 885 bp
ATGCAGATTAATAACTTTTTCTCCTTTGTATTCCACAATACAGAGACTGCTCTTTGGTTCCTGGAGCACTACCCCTATCTAGCGCACCAAACGGAAGATAAAGGATTGACAAGCCTTCAATTGCTAGCCCAAATGCCAACTGCCTTTGTGCCACAATCTCAACGAAGCAAATGGGAGATGCTAATTTATTATTGCCTTCCTGTTGATGGAGGAGATGTGGTCACACCAAATCAGAAAGATGATGTAGAGATCAACTTGGATAGCAACCAGCGGCGCCGTCAATCCATCTCTAGGAACAAGCTTTCAGGAACAGGAGGCCCGTATGGCGGCATAATTGACAAGATATGGAAGGACAAGAAAAACAAAAAATCACTAGAGAAAATCGTCCACCTGCTCGTTAAGTCGGACTATTCTTGGTTGATCAGTAACAAGCAAGCAAAGACAAAGACCATTTCTCTGGGGTCAGTGGAAACTCTTAGTAAAGATGGTGACGACGGAGACGAAAAAGGAAAGGCAGCCGCAAAAGCAACCAAATCAGAGGGAAATGGAAAGGAGGTCGCAGAAGCGACCAAATCGGATAAGGGGGTGACGACTAAAGTTTATGACTCTACCCCACTGATTATAGCAACTGTCAAAGGGAGTGTGTCCATTGTGAAGGAGATACTTGAGCAGCATCCTCAGGCGGCTGAGCACATTAACAAAAACGAACGCAACATTTTGCATGTGGCCATTAGGCATCGTCAGAAAGCAATCCTTAAGCTTATCAAAAGCAAACCAAGTGTGATGTCGAGACTGAATGAGAGGATCGACTGCGTTGGCAACATACCATATTGCACCAGGCTGCAGATAGGAGTTACTACTCTATATCCTTGTCTCAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

295

Amino Acids

32.97

Weight (kDa)

9.33

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 188 - 256 1.2e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 273
AciI CCGC 4 cut(s) 271, 327, 519, 683
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 1 cut(s) 726
AcsI RAATTY 1 cut(s) 879
AcyI GRCGYC 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 206, 291, 326
AflII CTTAAG 1 cut(s) 755
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 2 cut(s) 60, 836
AluBI AGCT 2 cut(s) 301, 760
AluI AGCT 2 cut(s) 301, 760
Alw21I GWGCWC 2 cut(s) 69, 693
Alw26I GTCTC 4 cut(s) 38, 492, 784, 878
AlwI GGATC 1 cut(s) 812
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 2 cut(s) 316, 726
ApeKI GCWGC 3 cut(s) 515, 670, 841
ApoI RAATTY 1 cut(s) 879
AseI ATTAAT 1 cut(s) 9
AspLEI GCGC 2 cut(s) 85, 276
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 500, 598
AsuNHI GCTAGC 1 cut(s) 124
AxyI CCTNAGG 1 cut(s) 678
BalI TGGCCA 1 cut(s) 728
BanI GGYRCC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 69, 693
BbvI GCAGC 3 cut(s) 527, 682, 828
BccI CCATC 3 cut(s) 200, 293, 479
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 62, 838
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 4 cut(s) 38, 492, 784, 878
BfaI CTAG 4 cut(s) 80, 125, 291, 374
BfmI CTRYAG 1 cut(s) 842
BfoI RGCGCY 1 cut(s) 277
BfrI CTTAAG 1 cut(s) 755
BfuAI ACCTGC 1 cut(s) 399
BglI GCCNNNNNGGC 1 cut(s) 324
BisI GCNGC 7 cut(s) 272, 328, 516, 519, 671, 684, 842
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 7 cut(s) 273, 329, 517, 520, 672, 685, 843
Bme1390I CCNGG 2 cut(s) 62, 838
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 2 cut(s) 59, 275
BmrFI CCNGG 2 cut(s) 62, 838
BmsI GCATC 3 cut(s) 168, 682, 745
BmtI GCTAGC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 83
Bpu1102I GCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 686
BsaHI GRCGYC 1 cut(s) 274
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 201, 204, 231, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 291, 326
Bse21I CCTNAGG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 62, 838
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 3 cut(s) 206, 291, 326
BseMII CTCAG 2 cut(s) 678, 692
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 3 cut(s) 527, 682, 828
BshFI GGCC 2 cut(s) 318, 728
BshNI GGYRCC 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 69, 693
BslI CCNNNNNNNGG 3 cut(s) 206, 291, 326
BsmAI GTCTC 4 cut(s) 38, 492, 784, 878
BsmBI CGTCTC 1 cut(s) 492
BsnI GGCC 2 cut(s) 318, 728
Bsp1286I GDGCHC 2 cut(s) 69, 693
Bsp143I GATC 3 cut(s) 249, 420, 804
Bsp1720I GCTNAGC 1 cut(s) 687
BspACI CCGC 4 cut(s) 271, 327, 519, 683
BspANI GGCC 2 cut(s) 318, 728
BspCNI CTCAG 2 cut(s) 679, 691
BspLI GGNNCC 2 cut(s) 59, 275
BspMAI CTGCAG 1 cut(s) 846
BspMI ACCTGC 1 cut(s) 399
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 812
BspT107I GGYRCC 1 cut(s) 273
BspTI CTTAAG 1 cut(s) 755
BssMI GATC 3 cut(s) 249, 420, 804
BssNI GRCGYC 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 62, 838
Bst4CI ACNGT 1 cut(s) 631
BstACI GRCGYC 1 cut(s) 274
BstAFI CTTAAG 1 cut(s) 755
BstC8I GCNNGC 2 cut(s) 126, 435
BstDEI CTNAG 3 cut(s) 476, 678, 687
BstF5I GGATG 1 cut(s) 673
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 2 cut(s) 85, 276
BstKTI GATC 3 cut(s) 252, 423, 807
BstMAI GTCTC 4 cut(s) 38, 492, 784, 878
BstMBI GATC 3 cut(s) 249, 420, 804
BstMWI GCNNNNNNNGC 2 cut(s) 324, 524
BstNI CCWGG 2 cut(s) 62, 838
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 2 cut(s) 60, 836
BstSFI CTRYAG 1 cut(s) 842
BstV1I GCAGC 3 cut(s) 527, 682, 828
BstXI CCANNNNNNTGG 1 cut(s) 457
Bsu36I CCTNAGG 1 cut(s) 678
BsuRI GGCC 2 cut(s) 318, 728
BtsCI GGATG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 471, 614
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 126, 435
CaiI CAGNNNCTG 1 cut(s) 47
CfoI GCGC 2 cut(s) 85, 276
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 1 cut(s) 722
CviJI RGCY 9 cut(s) 114, 128, 301, 318, 518, 686, 728, 760, 841
CviKI_1 RGCY 9 cut(s) 114, 128, 301, 318, 518, 686, 728, 760, 841
DdeI CTNAG 3 cut(s) 476, 678, 687
DinI GGCGCC 1 cut(s) 275
DpnI GATC 3 cut(s) 251, 422, 806
DpnII GATC 3 cut(s) 249, 420, 804
EaeI YGGCCR 1 cut(s) 726
Eco81I CCTNAGG 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 60, 836
EgeI GGCGCC 1 cut(s) 275
EheI GGCGCC 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 1 cut(s) 725
FaiI YATR 9 cut(s) 324, 332, 346, 603, 623, 723, 824, 829, 865
FalI AAGNNNNNCTT 2 cut(s) 738, 770
FatI CATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 7 cut(s) 272, 328, 516, 519, 671, 684, 842
FokI GGATG 1 cut(s) 660
Fsp4HI GCNGC 7 cut(s) 272, 328, 516, 519, 671, 684, 842
FspBI CTAG 4 cut(s) 80, 125, 291, 374
GlaI GCGC 2 cut(s) 84, 275
GluI GCNGC 7 cut(s) 272, 328, 516, 519, 671, 684, 842
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 318, 728
HhaI GCGC 2 cut(s) 85, 276
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 1 cut(s) 725
Hin6I GCGC 2 cut(s) 83, 274
HinP1I GCGC 2 cut(s) 83, 274
HindIII AAGCTT 2 cut(s) 299, 758
HinfI GANTC 1 cut(s) 605
HphI GGTGA 2 cut(s) 500, 598
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 5 cut(s) 234, 406, 538, 577, 744
Hpy188III TCNNGA 2 cut(s) 306, 789
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 4 cut(s) 125, 206, 343, 649
HpyCH4III ACNGT 1 cut(s) 631
HpyCH4V TGCA 4 cut(s) 4, 721, 834, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 324, 524
HpyF3I CTNAG 3 cut(s) 476, 678, 687
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 1 cut(s) 725
HspAI GCGC 2 cut(s) 83, 274
KasI GGCGCC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 3 cut(s) 249, 420, 804
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 3 cut(s) 527, 682, 828
LweI GCATC 3 cut(s) 168, 682, 745
MaeI CTAG 4 cut(s) 80, 125, 291, 374
MaeIII GTNAC 5 cut(s) 220, 425, 488, 586, 853
MalI GATC 3 cut(s) 251, 422, 806
MboI GATC 3 cut(s) 249, 420, 804
MboII GAAGA 1 cut(s) 107
MfeI CAATTG 1 cut(s) 119
MhlI GDGCHC 2 cut(s) 69, 693
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 4 cut(s) 119, 183, 333, 879
MluNI TGGCCA 1 cut(s) 728
Mly113I GGCGCC 1 cut(s) 274
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 6 cut(s) 203, 308, 532, 547, 687, 795
Mox20I TGGCCA 1 cut(s) 728
MscI TGGCCA 1 cut(s) 728
MseI TTAA 5 cut(s) 9, 399, 696, 756, 883
Msp20I TGGCCA 1 cut(s) 728
MspA1I CMGCKG 1 cut(s) 271
MspCI CTTAAG 1 cut(s) 755
MspR9I CCNGG 2 cut(s) 62, 838
MunI CAATTG 1 cut(s) 119
MvaI CCWGG 2 cut(s) 62, 838
MwoI GCNNNNNNNGC 2 cut(s) 324, 524
NarI GGCGCC 1 cut(s) 274
NdeII GATC 3 cut(s) 249, 420, 804
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 725
NlaIV GGNNCC 2 cut(s) 59, 275
NmuCI GTSAC 3 cut(s) 220, 488, 586
NspI RCATGY 1 cut(s) 725
PaqCI CACCTGC 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 7 cut(s) 273, 329, 517, 520, 672, 685, 843
PleI GAGTC 1 cut(s) 599
PluTI GGCGCC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 60, 836
PspGI CCWGG 2 cut(s) 60, 836
PspN4I GGNNCC 2 cut(s) 59, 275
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 1 cut(s) 47
SaqAI TTAA 5 cut(s) 9, 399, 696, 756, 883
SatI GCNGC 7 cut(s) 272, 328, 516, 519, 671, 684, 842
Sau3AI GATC 3 cut(s) 249, 420, 804
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 2 cut(s) 62, 838
SduI GDGCHC 2 cut(s) 69, 693
SetI ASST 4 cut(s) 303, 393, 558, 762
SfaNI GCATC 3 cut(s) 168, 682, 745
SfcI CTRYAG 1 cut(s) 842
SfoI GGCGCC 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 665, 755
SmoI CTYRAG 2 cut(s) 665, 755
Sse9I AATT 4 cut(s) 119, 183, 333, 879
SsiI CCGC 4 cut(s) 271, 327, 519, 683
SspDI GGCGCC 1 cut(s) 273
SspMI CTAG 4 cut(s) 80, 125, 291, 374
StyD4I CCNGG 2 cut(s) 60, 836
TaaI ACNGT 1 cut(s) 631
TaqI TCGA 2 cut(s) 788, 807
TasI AATT 4 cut(s) 119, 183, 333, 879
TauI GCSGC 4 cut(s) 274, 330, 521, 686
Tru1I TTAA 5 cut(s) 9, 399, 696, 756, 883
Tru9I TTAA 5 cut(s) 9, 399, 696, 756, 883
TscAI CASTG 2 cut(s) 471, 621
TseFI GTSAC 3 cut(s) 220, 488, 586
TseI GCWGC 3 cut(s) 515, 670, 841
Tsp45I GTSAC 3 cut(s) 220, 488, 586
TspGWI ACGGA 2 cut(s) 107, 510
TspRI CASTG 2 cut(s) 471, 621
Vha464I CTTAAG 1 cut(s) 755
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 1 cut(s) 879
XceI RCATGY 1 cut(s) 725
XspI CTAG 4 cut(s) 80, 125, 291, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.