pycom10g27710

Ankyrin repeat-containing protein At3g12360-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
28580049 .. 28581627
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g27710.2

Sequence Viewer

Length: 1284 bp
ATGGGCGGCATAATATATAAAATCTGGAAGGACAAAAAAAACAAAAAATCACTAGAGAAACTCATCCCGTTGCTTGTCAAATCGGACCATTCTTGGTTACATAATAGCAGGAAACCAAAAACCAAGACCATTTATCTGGGGTCAGTGGCAAAACTTTTTAAGGATGATGACGGAGGAAAAATGGAAAAGGCAGCCGCACAAACAGCTAAAACAGATATGGGAAATGGCGATGATGGAGGTGAAAAGGGAAAGGCAGCTGCAGAAGCAATCAAACCGGAAGAGGGGGCAACCAATAAAGTTTACAACTCAACCCCATTGCTTATAGCAACTATCGCAGGAACTGTTCCCCTCGTGAAGGAGATACTTGAGCAGCATCCTCAAGCGGTCGAGCACGTTAACTATAACGAACGCAACATTTTGCATTTGGCAATTAAGTACCGTCAGATACCAATTCTTAATCTTATCAGAAGCAAACCAACTGTATTGGCGAGGCTGAATGAGAGGATCGACTGCGATGGAAACACCATACTGCACCAGGCTGCAGATAGGAGTTACTACACTATAGCACTGTCTCAGAATTTAATTGGTCCTGCCATGCAGTTGCAAGCAGAGCTGCGCTGGTTTATGCGTGTGGAAGAGATACTACCGCCTCATTACAGCATGCACAACAACAAGAAGGAACTGACAGCAGAGGAGCTGTTCTACTATGAACATAACAAGCTTCTGGAATCGGCACAAGAATGGATAAAAGAAACGGCTCAATCATGCTCAACCGTGGCGGTGCTAGTGGCCACTGTGGTCTTTGCAGCCGCCTACGCCATTCCTGGGGGTAATGATCAAAGTGGCCGTCCTATTTTCCAGGACGATCCTCTCTTTTTGCTCTTCACTTGCATGGACGTTGTGGCTATCGCCTGCTCATTGTCTTCAGTGGCTTTTTTTCTCTCTGTCCTCTCCTCTCCACTCGAGTATCCGCTTTTCATCAGCAGCCTTCCTCGCAAGATCATGACTGGATTCGTCTTGCTCTTCTTGTCCATGGCAACAACCATGCTTGCCTTTGCCGCCACCATTTTGCTCTTGATTCGTGTCGAGAAGAAATGGACCAAGTCTTTACTTTACCCCATTGCCTTTTTCCCAGTCCCTCTCTTCGGCCTGCTGCAGTTTCCTATGTATCATTCTTTCAGAGTCATGTTTCAGAAAATTGATGCCTGGGTTTTGAACCCCTTCCGCTGCATTCTCAGCTTTTCCAAGAAGAGATCAATATGGGGCAAGCGTAAGGTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

48.15

Weight (kDa)

9.32

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000724)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 6, 195, 383, 647, 779, 810, 971, 1059, 1225
AclWI GGATC 2 cut(s) 512, 860
AcoI YGGCCR 2 cut(s) 789, 844
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 909
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 4 cut(s) 281, 355, 825, 1145
AgsI TTSAA 1 cut(s) 1216
AjnI CCWGG 4 cut(s) 534, 823, 858, 1205
AluBI AGCT 6 cut(s) 206, 257, 613, 697, 721, 1239
AluI AGCT 6 cut(s) 206, 257, 613, 697, 721, 1239
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 2 cut(s) 512, 860
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 962
AoxI GGCC 3 cut(s) 789, 844, 1147
ApoI RAATTY 1 cut(s) 577
ArsI GACNNNNNNTTYG 2 cut(s) 832, 864
Asp700I GAANNNNTTC 1 cut(s) 1220
AspLEI GCGC 1 cut(s) 618
AspS9I GGNCC 3 cut(s) 85, 587, 1098
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 962
AvaII GGWCC 3 cut(s) 85, 587, 1098
BaeI ACNNNNGTAYC 2 cut(s) 950, 983
BalI TGGCCA 1 cut(s) 791
BarI GAAGNNNNNNTAC 2 cut(s) 627, 659
BauI CACGAG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 915
Bbv12I GWGCWC 1 cut(s) 393
BccI CCATC 2 cut(s) 227, 509
BceAI ACGGC 2 cut(s) 771, 831
BciT130I CCWGG 4 cut(s) 536, 825, 860, 1207
BciVI GTATCC 1 cut(s) 978
BclI TGATCA 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 2 cut(s) 53, 785
BfmI CTRYAG 4 cut(s) 258, 540, 561, 1154
BfuI GTATCC 1 cut(s) 978
Bme1390I CCNGG 4 cut(s) 536, 825, 860, 1207
Bme18I GGWCC 3 cut(s) 85, 587, 1098
BmeT110I CYCGRG 1 cut(s) 962
BmgT120I GGNCC 3 cut(s) 85, 587, 1098
BmrFI CCNGG 4 cut(s) 536, 825, 860, 1207
BmrI ACTGGG 1 cut(s) 1127
BmsI GCATC 2 cut(s) 382, 1192
BmuI ACTGGG 1 cut(s) 1127
BpiI GAAGAC 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 363, 386
BsaJI CCNNGG 4 cut(s) 774, 824, 1032, 1206
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 4 cut(s) 281, 355, 825, 1145
Bse1I ACTGG 2 cut(s) 1012, 1133
Bse3DI GCAATG 2 cut(s) 314, 1119
BseBI CCWGG 4 cut(s) 536, 825, 860, 1207
BseDI CCNNGG 4 cut(s) 774, 824, 1032, 1206
BseGI GGATG 3 cut(s) 63, 169, 373
BseLI CCNNNNNNNGG 4 cut(s) 281, 355, 825, 1145
BseMI GCAATG 2 cut(s) 314, 1119
BseMII CTCAG 2 cut(s) 587, 1249
BseNI ACTGG 2 cut(s) 1012, 1133
BseRI GAGGAG 2 cut(s) 707, 943
BsgI GTGCAG 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 791, 846, 1149
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 962
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 4 cut(s) 281, 355, 825, 1145
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 1121
BsmI GAATGC 1 cut(s) 1230
BsnI GGCC 3 cut(s) 791, 846, 1149
BsoBI CYCGRG 1 cut(s) 962
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 5 cut(s) 504, 835, 865, 999, 1253
Bsp19I CCATGG 1 cut(s) 1032
BspACI CCGC 9 cut(s) 6, 195, 383, 647, 779, 810, 971, 1059, 1225
BspANI GGCC 3 cut(s) 791, 846, 1149
BspCNI CTCAG 2 cut(s) 586, 1248
BspHI TCATGA 1 cut(s) 1002
BspMAI CTGCAG 3 cut(s) 262, 544, 1158
BspPI GGATC 2 cut(s) 512, 860
BspQI GCTCTTC 2 cut(s) 887, 1028
BsrDI GCAATG 2 cut(s) 314, 1119
BsrI ACTGG 2 cut(s) 1012, 1133
BssECI CCNNGG 4 cut(s) 774, 824, 1032, 1206
BssMI GATC 5 cut(s) 504, 835, 865, 999, 1253
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 1032
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 4 cut(s) 536, 825, 860, 1207
Bst4CI ACNGT 6 cut(s) 343, 440, 481, 570, 775, 796
Bst6I CTCTTC 6 cut(s) 273, 630, 887, 1028, 1148, 1244
BstC8I GCNNGC 6 cut(s) 606, 662, 913, 1050, 1151, 1268
BstDEI CTNAG 2 cut(s) 573, 1235
BstDSI CCRYGG 2 cut(s) 774, 1032
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 63, 169, 373
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 5 cut(s) 507, 838, 868, 1002, 1256
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 5 cut(s) 504, 835, 865, 999, 1253
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 9 cut(s) 203, 263, 332, 610, 815, 993, 1058, 1236, 1276
BstNI CCWGG 4 cut(s) 536, 825, 860, 1207
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 4 cut(s) 534, 823, 858, 1205
BstSFI CTRYAG 4 cut(s) 258, 540, 561, 1154
BstV2I GAAGAC 1 cut(s) 915
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 3 cut(s) 791, 846, 1149
BtgI CCRYGG 2 cut(s) 774, 1032
BtgZI GCGATG 2 cut(s) 243, 528
BtsCI GGATG 3 cut(s) 63, 169, 373
BtsIMutI CAGTG 4 cut(s) 150, 566, 792, 933
Cac8I GCNNGC 6 cut(s) 606, 662, 913, 1050, 1151, 1268
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 1002
CfoI GCGC 1 cut(s) 618
Cfr13I GGNCC 3 cut(s) 85, 587, 1098
Csp6I GTAC 1 cut(s) 436
CviAII CATG 8 cut(s) 595, 661, 765, 892, 1003, 1033, 1045, 1186
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 573, 1235
DpnI GATC 5 cut(s) 506, 837, 867, 1001, 1255
DpnII GATC 5 cut(s) 504, 835, 865, 999, 1253
EaeI YGGCCR 2 cut(s) 789, 844
Eam1104I CTCTTC 6 cut(s) 273, 630, 887, 1028, 1148, 1244
EarI CTCTTC 6 cut(s) 273, 630, 887, 1028, 1148, 1244
Eco130I CCWWGG 1 cut(s) 1032
Eco47I GGWCC 3 cut(s) 85, 587, 1098
Eco57I CTGAAG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 962
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoRII CCWGG 4 cut(s) 534, 823, 858, 1205
EcoT14I CCWWGG 1 cut(s) 1032
ErhI CCWWGG 1 cut(s) 1032
FaeI CATG 8 cut(s) 598, 664, 768, 895, 1006, 1036, 1048, 1189
FaqI GGGAC 1 cut(s) 1121
FatI CATG 8 cut(s) 594, 660, 764, 891, 1002, 1032, 1044, 1185
FbaI TGATCA 1 cut(s) 835
FokI GGATG 3 cut(s) 50, 176, 360
FspBI CTAG 2 cut(s) 53, 785
GlaI GCGC 1 cut(s) 617
HaeIII GGCC 3 cut(s) 791, 846, 1149
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 618
Hin1II CATG 8 cut(s) 598, 664, 768, 895, 1006, 1036, 1048, 1189
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 4 cut(s) 728, 1011, 1078, 1182
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 301, 397
Hpy188I TCNGA 6 cut(s) 85, 444, 467, 576, 1181, 1194
Hpy188III TCNNGA 6 cut(s) 25, 352, 725, 1003, 1075, 1087
Hpy8I GTNNAC 2 cut(s) 301, 397
HpyAV CCTTC 5 cut(s) 22, 349, 670, 998, 1231
HpyCH4III ACNGT 6 cut(s) 343, 440, 481, 570, 775, 796
HpyCH4IV ACGT 2 cut(s) 393, 897
HpyF10VI GCNNNNNNNGC 9 cut(s) 203, 263, 332, 610, 815, 993, 1058, 1236, 1276
HpyF3I CTNAG 2 cut(s) 573, 1235
HpySE526I ACGT 2 cut(s) 393, 897
Hsp92II CATG 8 cut(s) 598, 664, 768, 895, 1006, 1036, 1048, 1189
HspAI GCGC 1 cut(s) 616
Ksp22I TGATCA 1 cut(s) 835
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 5 cut(s) 504, 835, 865, 999, 1253
LguI GCTCTTC 2 cut(s) 887, 1028
LmnI GCTCC 1 cut(s) 694
LweI GCATC 2 cut(s) 382, 1192
MaeI CTAG 2 cut(s) 53, 785
MaeII ACGT 2 cut(s) 393, 897
MaeIII GTNAC 2 cut(s) 96, 551
MalI GATC 5 cut(s) 506, 837, 867, 1001, 1255
MboI GATC 5 cut(s) 504, 835, 865, 999, 1253
MboII GAAGA 8 cut(s) 290, 647, 874, 915, 1015, 1102, 1135, 1261
MhlI GDGCHC 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 791
MluCI AATT 5 cut(s) 429, 450, 577, 582, 1197
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 1 cut(s) 1191
Mox20I TGGCCA 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 1220
MscI TGGCCA 1 cut(s) 791
MseI TTAA 5 cut(s) 159, 396, 432, 456, 581
MslI CAYNNNNRTG 2 cut(s) 739, 890
Msp20I TGGCCA 1 cut(s) 791
MspA1I CMGCKG 2 cut(s) 257, 1227
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 4 cut(s) 536, 825, 860, 1207
Mva1269I GAATGC 1 cut(s) 1230
MvaI CCWGG 4 cut(s) 536, 825, 860, 1207
MwoI GCNNNNNNNGC 9 cut(s) 203, 263, 332, 610, 815, 993, 1058, 1236, 1276
NcoI CCATGG 1 cut(s) 1032
NdeII GATC 5 cut(s) 504, 835, 865, 999, 1253
NlaIII CATG 8 cut(s) 598, 664, 768, 895, 1006, 1036, 1048, 1189
NspI RCATGY 1 cut(s) 664
PaeI GCATGC 1 cut(s) 664
PaeR7I CTCGAG 1 cut(s) 962
PagI TCATGA 1 cut(s) 1002
PciSI GCTCTTC 2 cut(s) 887, 1028
PctI GAATGC 1 cut(s) 1230
PdmI GAANNNNTTC 1 cut(s) 1220
PfeI GAWTC 3 cut(s) 728, 1011, 1078
PflFI GACNNNGTC 1 cut(s) 1102
PfoI TCCNGGA 1 cut(s) 858
PleI GAGTC 1 cut(s) 1190
PpsI GAGTC 1 cut(s) 1190
Psp6I CCWGG 4 cut(s) 534, 823, 858, 1205
PspGI CCWGG 4 cut(s) 534, 823, 858, 1205
PspPI GGNCC 3 cut(s) 85, 587, 1098
PspXI VCTCGAGB 1 cut(s) 962
PstI CTGCAG 3 cut(s) 262, 544, 1158
PstNI CAGNNNCTG 1 cut(s) 341
PsyI GACNNNGTC 1 cut(s) 1102
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 739, 890
SapI GCTCTTC 2 cut(s) 887, 1028
SaqAI TTAA 5 cut(s) 159, 396, 432, 456, 581
Sau3AI GATC 5 cut(s) 504, 835, 865, 999, 1253
Sau96I GGNCC 3 cut(s) 85, 587, 1098
SchI GAGTC 1 cut(s) 1191
ScrFI CCNGG 4 cut(s) 536, 825, 860, 1207
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 2 cut(s) 382, 1192
SfcI CTRYAG 4 cut(s) 258, 540, 561, 1154
Sfr274I CTCGAG 1 cut(s) 962
SinI GGWCC 3 cut(s) 85, 587, 1098
SlaI CTCGAG 1 cut(s) 962
SmiMI CAYNNNNRTG 2 cut(s) 739, 890
SmlI CTYRAG 3 cut(s) 365, 378, 962
SmoI CTYRAG 3 cut(s) 365, 378, 962
SphI GCATGC 1 cut(s) 664
Sse9I AATT 5 cut(s) 429, 450, 577, 582, 1197
SsiI CCGC 9 cut(s) 6, 195, 383, 647, 779, 810, 971, 1059, 1225
SspMI CTAG 2 cut(s) 53, 785
StyD4I CCNGG 4 cut(s) 534, 823, 858, 1205
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 6 cut(s) 343, 440, 481, 570, 775, 796
TaiI ACGT 2 cut(s) 396, 900
TaqI TCGA 4 cut(s) 387, 507, 963, 1086
TasI AATT 5 cut(s) 429, 450, 577, 582, 1197
TauI GCSGC 4 cut(s) 9, 197, 812, 1061
TfiI GAWTC 3 cut(s) 728, 1011, 1078
Tru1I TTAA 5 cut(s) 159, 396, 432, 456, 581
Tru9I TTAA 5 cut(s) 159, 396, 432, 456, 581
TscAI CASTG 4 cut(s) 150, 573, 799, 933
TspDTI ATGAA 2 cut(s) 723, 967
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 4 cut(s) 150, 573, 799, 933
Tth111I GACNNNGTC 1 cut(s) 1102
VpaK11BI GGWCC 3 cut(s) 85, 587, 1098
XagI CCTNNNNNAGG 1 cut(s) 353
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 664
XhoI CTCGAG 1 cut(s) 962
XmnI GAANNNNTTC 1 cut(s) 1220
XspI CTAG 2 cut(s) 53, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.